Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               ----------->GT1 -------->AHL20(2)                                                <-------TEIL --------YAB1                                                    --------->CCA1(2) ----->ATHB12                                                    --------->GLK1(2) ---->HAHB4                                                      --------->ARR14(1) ------ICU4                                                     --------->ARR11(1)                --- ----->YAB1                                   --------->TOE2(3) <---------GLK1(2)        <---------ZAT6 -----ATHB12                  --------->HSFB2a(2)    --------->YAB1--------->MYB59     ----------->GT1 ---->ICU4                    <---------HSFB2a(2)   <---------ATHB12----------->GT1<---------ARR11(3) -----YAB1            <------ZmHOX2a(2) --------->TOE1(3)       <---------ARR14(2) --------->GLK1(2) -MYB59             <---------GLK1(1)   --------->TOE2(3)       --------->ARR14(2) --------->ARR11(3)   gattatatcaacatcatataagagatcagactctagaagacaccttaacatcaaatcaaaatcaaagattcggtaaacatcgaaaaatctagtgatatat  20418600                                                                       --------->DEAR3(1)                                                                       <---------ANAC46          ----                                                                      <------NtERF2           -------                                                                    <---------DEAR3(1)     <------NtERF2                                                                   --------->At4g35610   <---------ANAC46              --------->YAB1                                       <---------At4g35610   <---------DEAR3(1)         <---------GLK1(2)                 ------>MYB46(1)       ---------->CDC5        <---------LBD16   <---------YAB1--------->YAB1            ------>MYB83          <-----------RAV1(2)  <---------DEAR3(1)   <---------ANAC55(1)                   <---------MYB46(2) <-----------GT1         --------->MYB52(1)   <---------ANAC58                      <---------MYB59 <---------MYB46(3)      <---------HSFC1(1)--   <---------ANAC58         ---------->DOF2--------->MYB52(1)  --------->TOE2(3) <---------HSFB2a(2) ------>WOX13(1)<---------YAB1        <-----------GT1    --------->MYB52(2)      --------->HSFB2a(2)   caattacgagtgattctcatcatagagactaaaagactaaataccaaacagaagattgtttgttacctcagcggcgaggtattcgagaacggcggagaga  20418700                   <---------ALFIN1                  ------>MYB46(1)                  -------->P                  ------>MYB83                --------->AtMYB61               <------NtERF2               --------->MYB46(3)           <---------ATERF1(1)          <---------ATERF1(2)          --------->ATERF1(2)          --------->DEAR3(1)   --------->ARR14(2)          --------->DREB2C(2)  <---------ARR14(2)          ------->PIF5<-------MYC2                         --------->HSFB2a(1)          <-------PIF5------->MYC2 --------->MYB52(1)      --------->HSFC1(2)        --------->MYB52(1)  <---------ANAC46              --------->ARR14(2)      <---------ZAT2  ------->MYC3 <---------At5g28300    <---------ARR14(2)      --------->At4g35610 <---------ANAC46                --------->GLK1(2)      <---------ABI4(2) <-------TEIL           <------ZmHOX2a(1)                               <-----      --------->ZAT18 <-------MYC3<-----------GT1--------->GLK1(2)                            <------      <---------At4g35610<---------DEAR3(1)  <---------TOE2(3)      ------->GAMYB             <------ ----->CCA1(2)------>NtERF2---------->ID1    <---------TOE1(3)   --------->MYB52(1)           ------- ---->GT1<---------LBD16--------->SPL7   <----------DOF2 <---------GLK1(2)                    ------- ------->MYB52(1)----------->RAV1(1)<---------LBD16   <---------------------WRI1      <----------DOF2   taaacgggagcaccggcaccaacacgttcggcgtatttaccggctttaaggaatctagcgattcttccaacgggaaattgaagaccagctttagaagatc  20418800                                                              <------NtERF2                                                            --------->RAP2.3(2)                                                           <------NtERF2                                                           --------->ATERF1(1)                                                           --------->RAP2.3(1)                                                           <---------LBD16                                                          <---------ATERF1(1)                                                          <---------RRTF1(1)                                                          <---------RAP2.6(1)                                                          ------>NtERF2                                                          <---------ERF1                                                         <---------DEAR3(1)                                                         --------->DEAR3(1)                                                        --------->RRTF1(1)                                                        --------->RAP2.6(1)                                                        --------->ATERF1(1)                                                        <------NtERF2                                                        <---------ABI4(2)                                                        --------->DEAR4(2)                                                        --------->RAP2.3(1)                                                       <---------RRTF1(1)                                                       ------>NtERF2                                                       <---------DEAR4(2)                                                       --------->LBD16                                                       <---------ATERF1(1)                                                       <---------ERF1                                                       <---------ORA47(2)                                                       <---------RAP2.3(1)                                                      <---------ATERF1(2)                                                      --------->DEAR3(1)                                     <----------DOF2  <---------DREB2C(2)                                    <---------DAG2    <---------RAP2.3(2)                            --------->At4g35610       --------->ATERF1(2)                            ------>ZmHOX2a(1)         <---------DEAR3(1)                       <----------DOF2                <---------RAP2.3(3)        <----------DOF2<---------GLK1(1)   <---------MYB46(3)--------->LBD16 --------->CCA1(2)    <---------ANAC58  --------->MYB52(2)<---------RAP2.3(1) -ZmHOX2a(2)          <---------ANAC58<---------MYB52(1)--------->ERF1 ---ARR14(2)    <----------DOF2   ------>NtERF2      <---------LBD16               --------->LBD16 ---ARR11(3)   <---------ANAC58  <---------ALFIN1   --------->MYB52(1)            --------->HSFB2a(2) -->ARR11(3)   <---------ANAC58------>NtERF2     <---------At4g35610              <---------HSFB2a(2) -->ARR14(2)---------->ID1  <---------At4g35610 <---------ALFIN1--------->GLK1(1)<---------LBD16    <   gagagacggactttgtagcttttggctttcctctgccacctttagttgttccactgccggcgccggaactcattttttgtttatcgggaaatttgaagag  20418900                                           <---------ANAC58                                           <---------ANAC58                                           ----------->GT1                                           <---------ANAC46        <---------GLK1(1)      --------->ARR11(3)                                         <---------ZAT14           --------->GLK1(1)    <---------TOE2(3)                                         --------->ZAT18      ----------->GT1      <---------ANAC46                                         --------->ZAT14  --------->MYB59          <---------ANAC58                                        --------->ALFIN1  <---------AtMYB61  --------->ARR11(3)                              --------->ARR11(3)          <---------TOE2(3)  --------->AHL20(1)           <---------YAB1     <---------ARR14(2)      *TSS<---------TOE1(3)  <---------AHL20(1)         ----------->GT1      --------->ARR14(2)    <---------TOE1(3)       <-----------TBP ---------  ----------->GT1            <------ZmHOX2a(1)      <---------TOE2(3)       --------->AHL20(2) -------GAMYB              <---------TOE2(3)    <----------DOF2 <---------YAB1     <---------ANAC58   gcgattgtaaaatgtgattagagatggctgaggattttgtgagtggagtgatttagggtttaggttgtgatttctgaaatatatagcgttgagataatgg  20419000           <-------GAMYB                  <------NtERF2          --------->MYB52(2)--------->GLK1(1)          <---------MYB46(3)<---------WOX13(1)        <--------P         --------->ARR14(2)                            ------>NtERF2        <---------MYB52(1) <------------CBF <------------CBF             --------->LBD16    ---------      <------MYB83     <---------LBD16   >>>>>>>>>>>>>>>>>LFY          <---------LBD16     <---------DEAR3(2)      <---------MYB46(3)   <---------ARR14(2)                        <-----------GT1       <------MYB46(1)      <------MYB46(1) --------->O2 <---------ANAC58        <---------TOE2(2)               <------MYB83    <---------WOX13(1)<---------O2<------NtERF2            --------->LBD16                 ----------   <------------CBF   <---------ANAC46   ------>NtERF2     <---------TOE1(2)       <-----------GT1---  --------->ATHB12 ----------->HVH21 --------->ALFIN1     <---------ANAC46    <----------DOF2     <-- <---------YAB1   <-----------HVH21<---------ANAC58      <---------LBD16--------->ANAC46  <---------DEAR3(1) >MYB52(1)--------->MYB111(1)    ------>NtERF2      --------->ARR11(3)<-----------GT1     <---------DREB2C(2)   attttgattggttagttgtgagtcacgcggattgccagcgtggcaccattgtaagttctcgcgggtttttttttccgcctctttttaacaagtcggtgaa  20419100                                                                               --------->AHL20(1)                                                                               <---------AHL20(2)                                                                               --------->AHL20(2)                                                                    <------MYB83              <---------------AGL15                                 <------MYB46(1) >At5g28300   --------------->AGL15              --------->AtMYB61 --------->MYB59 ->GT1       <---------YAB1                    ------->TEIL      <---------MYB52(1) <-----------GT1 ------>AHL20(2)        --------->AHL20(2)   --------->ZAT18  --------->MYB59 --------->AHL20(2) -------AHL20(2)    <---------ZAT6  ----------->GT1      <---------YAB1 ----------->GT1      <-------   ttttttaagacgattactatttgtgttaaaattcggtttagaaaaaatgcaccaaaactataattcggttcggtttgaaaaaaaattaacatccaatgtt  20419200                                                                      --------->YAB1                                                                     <---------ATHB12                      <------MYB46(1)                            ------------>CBF                      <------MYB83                      <---------TOE1(3)                     --------->MYB59       --------->YAB1     --------->ANAC58                     <---------MYB46(3)   <---------ATHB12    --------->ANAC58 ----------->GT1 <-----------RAV1(1)    --------->WOX13(1)<------ZmHOX2a(1)              <----------DOF2 --ATHB12--------->At4g35610     --------->AHL20(2)     <---------TOE2(3)      --------->ZAT6   gaaccgaaattagctcaatttgttgggtcatgagataaatttcaatcaaatggtagtgaaggataagcccaataacaaataacacaaacagctttaacat  20419300                                                                                                    <                                                                                                   <-                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                       --------->AHL20(1)                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                   --------->AHL20(2)                                              <------------CBF                     <---------AHL20(2)                                <---------MYB46(3)                     <---------WOX13(1)     -------                               --------->ALFIN1                 <---------YAB1     --------->AHL20(1)                     --------->ANAC58      <---------WOX13(1)   ----------->HVH21  <---------AHL20(1)                     --------->ANAC58   <---------YAB1    --------->ZAT14         --------->AHL20(2)-                    --------->WOX13(1)--------->YAB1      <---------ZAT14         <---------AHL20(2)-                 <-----------HVH21   --------->ICU4      <---------ANAC46     --------->ICU4 <-------         --------->DAG2     <-----------RAV1(1)<---------WOX13(1)     <------------CBF<---------AHL20(2)        ---------->DOF2--------->YAB1<---------YAB1      <---------REM1(1)  ----------->GT1  <-------   gggccaactaaaaagtgactgtcaagcataatggtggtgatgatgatagattgatagtggtgtagtatgacagattgatagttattaaattaattaagat  20419400         <---------ARR11(3) ---------AHL20(2) --------YAB1 -----YAB1 --->ARR11(3) ----ARR11(3) -->YAB1 --------->ARR11(3)         <---------YAB1                                           -------- -------->AHL20(2)           <---------AtLEC2           ----------->GT1                   <---------ZAT18 -------->YAB1          --------->ARR14(2)       --------->TOE2(3)                        --------->ZAT18 --YAB1------->TEIL<-----------GT1 <-----------TBP    ---------->DOF2                     <---------ZAT14 --TOE2(3)      --------------->AtSPL8  ---------->DOF2--------->DAG2              ---------->DOF2   aattatatgtatatattctttgtacatttctgcatgtttttataaagtcaaacttaaaaagtcaaaacacttatgtcaaaaaaaaaaaagagtgaacaac  20419500  Previous    Next  AGI:  At1g54690.1    Description:  G-H2AX/GAMMA-H2AX/H2AXB/HTA3; DNA binding. Identical to Probable histone H2AXb [Arabidopsis Thaliana] (GB:Q9S9K7); similar to G-H2AX/GAMMA-H2AX/H2AXA/HTA5, DNA binding [Arabidopsis thaliana] (TAIR:AT1G08880.1); similar to Histone H2A; Histone-fold [Medicago truncatula] (GB:ABN08174.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 20417983    to: 20418954    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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