Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------AHL20(2)                                                                   <---------AHL20(2)                                                      --------->GLK1(1) <-----------GT1       ----------->GT1                      <---------AHL20(2) --------->ICU4                <------- ----->ARR11(3)                  <----------DOF2 ----------->GT1   --------->AHL20(2)       --------- ------ARR11(3)     <---------AHL20(2)     --------->AHL20(2) <---------AHL20(2)         <----------DOF2 -REM1(1)          --------->AHL20(2)   --------->AHL20(2)   --------->YAB1         ---------->DOF2 <   attttaaaaatgtaaattctatttaataggctgttcttttttttatataatatgtgaaatctataaaaattaaataactatttgaaaaaagcttttaaat  20416400                                                 --------->YAB1                                                 --------->AHL20(2)                                             <---------YAB1                                             <---------AHL20(2)                                            --------->AHL20(1)                       --------->ARR11(3)   <---------AHL20(1)   <---------YAB1<-------GAMYB              --------->AHL20(2)  <---------AHL20(2)   --------->GLK1(2) --------->AHL20(2) --------->YAB1  ----------->GT1       --------->AHL20(2)                    ---------->DOF2 --AHL20(2)     <------MYB83 <---------GLK1(2)--------->YAB1      <---------ICU4 >AHL20(2)      ----------->GT1       --------->YAB1  --------->MYB52(1) --------->YAB1       <------ ---------YAB1  <------MYB46(1)       --------->AHL20(2)      --------->AHL20(2)           --------->YAB1   tgattataattttgtagtgggttaaaatctagaatgtcaataaaaatataataaaaaaaccgaattaaaaatcactaataaaagccttcgaattcataat  20416500                                                                                                    <                                                                                                    -                                                  <---------ICU4                                    <                                           --------->ATHB12                                        --                                           <---------ICU4                                          <-                                          --------->ICU4                                           <-                                    --------->LBD16                                                <-                                   --------->HSFB2a(2)                                            <--               <----------DOF2     --------->HSFC1(1)             --------->AHL20(2)              <--           <-----------GT1         <---------HSFB2a(2)    --------->ANAC58                       ----     <----------DOF2      --------->ANAC46<---------YAB1  --------->ANAC58                     <----- ---ICU4  <---------AHL20(2)       <---------HSFC1(1)--------->YAB1                            <-----   cccaatgcttttttaatctttttcttctacacaatttccagaagatgattactaattagaacgaaatataaaatacaaaatttgtccaaaaacttggaga  20416600                                                                   <---------MYB46(3)                                                     --------->At4g35610                                                     <---------At4g35610                                                    <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxsmallRNA(le3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>ZmHOX2a(2)                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ARR14(2)                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------LBD16                        --------->ZAT18        --------->LBD16 -------->LBD16                        <---------ZAT18   --------->REM1(1)  ------------>CBF ---------ANAC46                   <xxxxxxxxxxxxxxxxsmallRNA(se3)  *TSS    <-----------GT1 ------->ALFIN1<-------PIF5--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------ANAC46<xxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------ANAC58--------->LBD16---------->DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------ANAC58------->PIF5--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------LBD16<xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----TEIL <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----->ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----GLK1(1)<xxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2<-------TEIL    ----------->GT1       ------- ----At4g35610<xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ANAC55(2)   tgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccagttgttgagttacaatgcttcacgttttataa  20416700                                                                                          <---------GLK1(1)                                                                                          --------->GLK1(1)                                                                                       --------->LBD16                                                                                      --------->RAP2.6(2)                                                                                      --------->LBD16                                                                                     --------->RAP2.3(1)                                                                                     <---------LBD16                                                                                    <---------ATERF1(1)                                                                                    --------->ABI4(1)                                                                                    ------>NtERF2                                                                                   <---------DEAR3(1)                                                                                   <---------ATERF1(2)                                                                                   --------->DEAR3(1)                                                                                   --------->ATERF1(2)                                                                                   --------->RAP2.3(3)                                                                                   --------->RRTF1(3)                                                                                   --------->RRTF1(2)                                                                                   --------->RAP2.3(2)                                                                                  --------->RAP2.6(1)                                                                                  --------->RRTF1(1)                                                                                  --------->DEAR4(2)                                                                                  --------->ATERF1(1)                                                                                  --------->ORA47(2)                                                                                  --------->ERF1                                                                            --------->ETT(2)                                               <-----------HVH21            <---------ETT(2)                                               <-----------TGA1           <---------MYB52(1)   <-----               ------>MYB83                   --------->bZIP60(2)        --------->LBD16<------NtERF2               ------>MYB46(1)               --------->LBD16           <---------LBD16--------->RAP2.3(2)               -------->P                    ------>NtERF2         <---------ARR11(3)<------NtERF2              ----------->RAV1(1)           --------->DEAR3(1) ------>ZmHOX2a(2)  --------->RAP2.3(1)       >>>>>>>>>RAP2.2                    --------->ZAT2      <------ZmHOX2a(2)  --------->At4g35610     <-----------ARR10                    <---------ZAT2     --------->ARR14(2)  <---------ATERF1(1)     --------->ARR11(3)              --------->ANAC58        <-----------ARR10   <---------At4g35610     <---------ARR11(3)      <---------CCA1(2)--------->O2   <---------ARR14(2) --------->DEAR3(1)    --------->GLK1(1)------->TEIL    --------->ANAC46        <---------AGP1<--------P--------->ATERF1(1) ---->TBP   --------->MYB46(3)       --------->ANAC58       <---------CCA1(2)  --------->DEAR3(2)  --   attcgaatatctaaaccaacatgaactcttcttatctccaagcgagccgcgtcatggtgctcggatctaaatctccggtagaccgccgccggaaatcact  20416800                                        --------->ZAT14                                    --------->ARR14(2)                                    <---------ARR14(2)                              <---------ARR14(2)                                 --------->ANAC58                                   --------->ARR14(2)                                 --------->ANAC46                                 <----------DOF2                                 <---------ANAC55(2)                             <---------ANAC58  --------->DAG2              --------->ICU4                                     <---------ANAC58  *TSS    ---------->DOF2   --------->WOX13(1)                                  <---------At4g35610 - ----ANAC55(2)--------->ARR11(3) --------->ANAC58                             <---------RAP2.6(2)   < -------->DOF2<---------ARR11(3) --------->ANAC55(2)<-----------HVH21    <---------ICU4   <----------DOF2   tgaaagagtggataaagaactcttaagaggcaattacgaaactgctctctcactcgtcaaacaactcaagagcaaacatggctgcttatctgcttttggc  20416900                 --------->ANAC58               <---------AHL20(2)                     --------->LBD16                 --------->ANAC58               --------->AHL20(2)         --------->AHL20(2) -------->At4g35610                            <---------ATHB12            <---------AHL20(2) ---------At4g35610  <---------CCA1(2)         --------->AHL20(2)<----------DOF2 --------->At4g35610   tctgctaaattggtttctctcgcatctctctcttaatgcttatttgccaataaatcatctctaattcctttttttttttaattagcttccgaagaaatta  20417000                                  <---------GLK1(2)                               <---------WOX13(1)                             --------->ATHB12                             <---------MYB46(3)         ------->TEIL                           <---------MYB52(1)--------->LBD16                          <---------ICU4                          <-------GAMYB     --------->HSFB2a(2)                      <---------DAG2                         <---------MYB46(3) <---------HSFB2a(2)                <----------DOF2                    <-----------RAV1(2)  --------->ETT(2)                    <-------TEIL --------->ICU4   ------>ZmHOX2a(2)      <---------ETT(2)                --------------->AtSPL3    <-   gacatgagtagcaaaactgatctcaggtcgttgattgattctgtctccagaagtattgaatctgtttatgtccaagaggtactttcaatttttgcagtgt  20417100                                        <---------AHL20(2)                                   <---------AHL20(2)                                  --------->AHL20(2)                                  <---------AHL20(1)            <-------MYC3          <---------AHL20(2)   <---------ARR14(2)                       -----            ------->MYC3    --------->TOE1(3)         <------ZmHOX2a(1)         ----------->GT1 =====      --------->YAB1        --------->TOE2(3)       <---------TOE1(2)        --------->CCA1(2)  <----     <---------ATHB12     ------->TEIL <---------AHL20(2)               ---------->DOF2         ----- ----------GT1        --------------->AtSPL8<---------AHL20(2)    <---------KAN4(2)   --------->AHL20(2)   tttaccaataaacacatgtaatttcatgtaccttaattttttttattttttttgtaggattcagtgagaacatccaaagagatggaaattaaaacttcac  20417200                                  ------>ZmHOX2a(2)                                 <---------GLK1(1)                                 --------->GLK1(1)                                 <------ZmHOX2a(2)                                --------->ARR11(3)                                <---------ARR14(3)                                <---------AGP1                                --------->ARR14(3)                   <---------MYB46(3)                  <---------MYB52(1)         <---------MYB46(3)     <---------ARR11(3)         <------MYB83    <---------At4g35610         <------MYB46(1) --------->At4g35610     --------->ATHB12  <-----------RAV1(2) ---->At4g35610  <-------GAMYB  --------->ARR14(2)                                   <---------AHL20(2) ===========================RAV <---------ARR14(2)              <---------YAB1      --------->AHL20(2) -----At4g35610 <-----------RAV1(1)  <---------MYB52(1)   <---------ARR11(3)----------->GT1    <----- ------>RAV1(2) ===================RAV                    <<<<<<<ZML2     ---------->DOF2--------->YAB1   ctgaagaagattggttctctgttgttcaggtgaagatctcttagttgtcaaataaaactagaacttaacattgttgcaaagtgaaattttatcacaaatg  20417300  Previous    Next  AGI:  At1g54670.1    Description:  pre-tRNA. tRNA-Ala (anticodon: TGC) Range:  from: 20416595    to: 20416667    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g54680.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68603.1) Range:  from: 20416802    to: 20418241    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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