Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ANAC58             --------->ANAC58             --------->ANAC55(1)             --------->ANAC46             --------->ANAC55(2)            <---------LBD16                                                                 <--------       <----------DOF2                                                                      ---------      <---------ANAC58                    <---------AHL20(2)                                ---------  <---------ANAC46                    <---------AHL20(2)                                    <--------  <---------ANAC58                    --------->AHL20(2)  --------->LBD16                ------>MYB46(1)  <---------ANAC58   ---------->DOF2 --------->AHL20(2)   ------>NtERF2                  ------>MYB83 ---------------------->TaNAC69(2) <---------ARR11(3)    <---------RAP2.6(2)     --------->MYB59 ------ICU4<---------AtLEC2        --------->ARR11(3)   <---------LBD16       ------------>MYB.PH3(2) ->GT1<---------ANAC58         ---------->DOF2 <-----------GT1              <------ZmHOX2a(1)    ----   aattgcttgctttgcacggaactaaaagaaaaaaaaagatttatttagtttaccttgttccggcataagtggaagagaggagttagatacctagcacact  20395800                                                                                        <---------GLK1(2)                                                                                --------->ANAC58   --------->DAG2                                                               --------->ANAC46  ---------->DOF2                                                               --------->ANAC58 -ZAT14                                ------>ZmHOX2a(1)                      ---------->DOF2  ------ >ZAT18                          --------->ARR14(2)                         --------->AtLEC2   <----- >ZAT14  <---------ANAC58        <-----------ARR10                  ------>ZmHOX2a(1)--------->MYB46(3) -ZAT18  <---------ANAC58        <---------ARR14(2)             <---------ARR14(2) --------->MYB52(1) ------->GT1              ---------->DOF2                       --------->ARR14(2) ----------->RAV1(1)   ggttaaaagtggctagcatctgtttccctatagcagttctcctctcagtgttttccatagcctcaagttcctgcttccattcaagcaacagcttcttgca  20395900                   ---------->ID1                  <-----------HVH21                 --------->O2         =============================HOX2a_HOX2a         ==============HOX2a_HOX2a         ------>ZmHOX2a(2)        <------ZmHOX2a(2)        ===============HOX2a_HOX2a        ==============================HOX2a_HOX2a       <-----------ARR10       --------->ARR11(3)                                                                   <--------       <---------ARR11(3)                                                                   <--------HAHB4       <---------ARR14(2)                                                                  <---------YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               --------->ICU4       --------->ARR14(2)                                                                --------->YAB1       --------->ARR14(3)                                                  ----------->RAV1(1)       <---------ARR14(3)       --------->ANAC46                ------>ZmHOX2a(1)  <---------At4g35610       --------->GLK1(2)       --------->HSFB2a(2)          --------->ARR14(2)     --------->At4g35610    --------->ANAC58           <---------HSFB2a(2)          <---------ARR14(2)  <---------ATHB12    --------->ANAC58           ------>ZmHOX2a(1)  ---------->DOF2        <---------At4g35610--------- --->HSFB2a(2)   --------->ANAC46               <---------HSFB2a(2)      --------->At4g35610--------- ----HSFB2a(2)  ------>ZmHOX2a(1)               --------->HSFB2a(2)------>ZmHOX2a(1)     <---------ICU4   gaacacaaggatcttgtcctcgtcgcataaatcctcgaaattagcttcttccaaaagcttcaaatcctccttctcagcaccaatgagctcatcatcatta  20396000                                                                      --------->ANAC58                                                                  --------->ANAC55(1)                                                                  --------->ANAC58                                                                  --------->AtLEC2                                                                  --------->ANAC55(2)                                                                  --------->ANAC58                                                                  <---------ANAC55(2)                                                                  --------->ANAC46                                                              <-----------HVH21                                                             <---------bZIP60(1)                            --------->AtMYB61                --------->bZIP60(1)                    --------->YAB1                           <---------TGA2(1)                 --------->WOX13(1)                        --------->ZAT14               <---------YAB1                       <---------At4g35610 -ICU4         <---------ATHB12      ------>ZmHOX2a(1)<---------ZAT14 --------->ANAC58 >ATHB12     ------>ZmHOX2a(1) <---------ALFIN1     --------->At4g35610           ---------->ID1 >YAB1 ------>ZmHOX2a(1)   --------->ZAT18   <----------DOF2 --------->TGA2(1)<---------MYB52(1)   ctcgtcttcctcttcctatcattcatgagaccactactcctctcccgcttcttgagctcagtgatgtcacgcaagaaatcgtttgtctctccttgagtca  20396100                                                            ----------->RAV1(2)                                                            <---------At4g35610                                                            --------->At4g35610                    --------->KAN4(2)                       <---------ZAT2                   <---------KAN4(1)              <------ZmHOX2a(2)                   --------->KAN4(1)--------->ANAC58       ------->TEIL                  <---------KAN4(2) --------->ANAC46      <---------ALFIN1              --------->HSFB2a(2)   --------->ANAC55(1) --------->RAP2.6(2)              <---------HSFB2a(2)   --------->ANAC58  --------->At4g35610              ------>ZmHOX2a(1)     <---------ANAC55(2) --------->RAP2.3(2)          --------->AtMYB61    --------->REM1(1) <---------ARR14(2)      --------->ETT(2)   ================================HOX2a_HOX2a    --------->ARR11(3)    <---------DOF5.7(2)  ------>ZmHOX2a(1)       --------->ARR14(2)     <---------ARR11(3)  <---------MYB52(1)--------->YAB1  --------->ANAC55(2) --------->DEAR3(1) *TSS    <----------DOF2  --------->DOF5.7(2)  <---------ICU4  ------->TEIL   <---------At4g35610  ------------>CBF    ------   tgtcgttatcgacctcctcgaataatccttccttcaacacgtacttgagtcgatccagccgcacctgatcacaagatttcaatgcctttgtgagttatgg  20396200                                                                                  --------->ANAC55(2)                                                                           <------MYB46(1)                                                                           <------MYB83                                                                       <---------REM1(1)                                                                       <---------ANAC46                                                                       --------->ALFIN1                                                                     <---------MYB46(3)              <---------YAB1               --------->ANAC58         <---------AtMYB61           ------->TEIL                    --------->ANAC58         --------->ALFIN1           --------->ARR14(2)           --------->WRKY18(1)      <---------DEAR3(1)           --------->GLK1(2)          --------->ANAC58      --------->ANAC46      <---------ANAC55(2)  --------->ANAC55(2)                 --------->ANAC58      --------->ANAC58     <-------TEIL  --------->ANAC58           <---------ANAC58               --------->ANAC58 ----------->HVH21  --------->ANAC58           <---------ANAC46             ---------->DOF2<--------P           ------- ----->GT1 <---------ARR14(2)<---------ANAC58         --------->YAB1<---------DEAR3(1)      <--------   tgacaagtattcgaatctgatagagtgttttgcttagaccaagtcaagctaactattgataaaagccacggtggtgtaggtgatacgtcttatttcacat  20396300                                                                  --------->ARR11(3)                                                                  <---------GLK1(2)                                                                  <---------ARR11(3)                                                         --------->ARR11(3)                                                         <---------ARR11(3)                                                 <---------ANAC55(2)                                <                                                 --------->ANAC55(2)                           <-----                                                 <---------ANAC55(1)                     <---------MYB52(2)   <---------WOX13(1)                      <---------ARR11(3)  --------->HSFB2a(2)<---------At4g35610 -->ANAC46                              <---------HSFB2a(2)    <---------HSFB2a(2)--------->At4g35610 ---GT1             ---------->DOF2     --------->HSFB2a(2)------>ZmHOX2a(2) --------->YAB1   <------   catggattgatatatactctagtaaagcgtagcatcacacatctagatgttaagtgtctgatcttctagattttgagtatcatgagatgcccctaacctt  20396400        --------->ANAC58        --------->ANAC46      <---------AtLEC2                     <----------DOF2 --------->ARR11(3)               <-----------RAV1(2)                                             --- --------->ARR14(2)             <---------ANAC58                                                  <-- <---------ARR14(2)   <---------MYB59    --------->At4g35610                                  ------- ---------CCA1(2)     --------->TOE2(3)  <---------At4g35610        <-----------GT1         --------- -----DOF2            <-----------------AGL3  --------->YAB1      <----------DOF2           <-------- ---DAG2--------->ANAC58        <---------ANAC58              ---------->ID1             ------->TEIL   ttatatctgcaagacactcgtatacctaaaactggctcgggtgagctttgatgatgtcgagtttgtttctttacctcttctcaagactatgcatttaaaa  20396500       ------->TEIL                                                         <---------ANAC58    <---------ANAC55(2)                                                     <---------ANAC46    --------->ANAC55(2)<---------DAG2                                  <---------MYB46(3) ------>ARR11(3)       <----------DOF2                                 <-----------RAV1(1) -------ARR11(3) --------->ANAC58            ------>ZmHOX2a(1)   ---------->DOF2 --->DOF2        --------->ANAC58    ---------->ID1          ----------->GT1<---------AtLEC2 >AHL20(2)     ---------->DOF2   <---------ANAC58            <---------ZAT6 <---------ANAC58    ----- -AHL20(2)    <---------ATHB12   <---------ANAC58     <---------LBD16<---------GLK1(2) --------->YAB1   gataatatgtatcccaatgaagccacttttgagagacttgtctcatcctgttccctctcggaagagttaaagattgttgcatgtttgaagcataatgcga  20396600          --------->ZAT18          <---------ZAT18                                    <---------YAB1          --------->ZAT14                                    --------->ICU4                      ----          <---------ZAT14        <-------TEIL     <---------DAG2                                 <---     <---------ANAC46        --------->DAG2       <----------DOF2                                ----     <---------ANAC58       ---------->DOF2 <---------ARR14(2)                                ------>ZmHOX2a(1)     <---------ANAC58    --------->YAB1 --------->YAB1    <------NtERF2           --------->ATHB12  <----------DOF2      <---------WOX13(1)   --------->ARR14(2)--------->ATHB12   <---------YAB1  <--- ----->DOF2        <-----------HVH21   <---------YAB1  <---------LBD16 <-------TEIL <---------WOX13(1)   aagtctttcgggtgctctctaggtcattgataaggcgcattataagaatacgcttttctcggcatgattcgggttcaagaattgtgattgatgctcctca  20396700  Previous    Next  AGI:  At1g54590.1    Description:  splicing factor Prp18 family protein. similar to splicing factor Prp18 family protein [Arabidopsis thaliana] (TAIR:AT1G03140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22532.1); contains InterPro domain Prp18; (InterPro:IPR004098) Range:  from: 20395227    to: 20396101    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g54600.1    Description:  pseudogene, hypothetical protein Range:  from: 20396175    to: 20397297    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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