Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------ICU4                <---------ANAC58                                       --------->ARR11(3)                <---------ANAC55(2)                                  <---------YAB1                <---------ANAC46                                     <---------TOE1(3)     --------->AHL20(2)                                      --------->ARR14(2)      ------->TEIL ------AHL20(2) --------->ANAC55(2)           --------->YAB1---------->DOF2       --------->AtLEC2 -MYB52(1)      <---------ANAC58 <---------TOE2(3) --------->ZAT6    <---------TOE2(3)             <-   ttttcaataacatacaatgcgtgagttcaaatgttgatgttattgcaataacaacactaacaaaaaccgctaagattatgacccatgcacattaatacat  20392600                            <---------AHL20(2)                         <---------ICU4                       <---------TOE2(3)                      --------->YAB1                      <---------AHL20(2)                      --------->AHL20(2)                    <---------YAB1                           ----------->GT1                  <------                  <---------ICU4                        --------->AHL20(2)                    <------                 <---------YAB1                         --------->AHL20(1)        ----------->GT1              <---------YAB1<-----------GT1             <---------AHL20(2) <-----------GT1    <------ --------TOE2(3) --------->ICU4                   --------->YAB1        ------->TEIL <---------AHL20(2)   ttatgttgagaatagtctgattattaatatttacatgttattcaacatacaatgaaaataaaatggtaaaaatgtatttacacatagtaaattgatgcgt  20392700                                                                                 --------->AHL20(2)                                                                <---------AHL20(2)                <--                                                                --------->AHL20(2)                ---       ----------->GT1                                    --------->ZAT6      <---------ICU4      ---      ------->TEIL                                   --------->YAB1        --------->YAB1         <-- ---ANAC46                                          <---------YAB1   --------->YAB1              ---- ---ANAC58                 --------->MYB52(1)   <----------DOF2 --------->AHL20(1)           -------- ---ANAC58     --------->ATHB12           --------->TOE2(3)     <---------AHL20(1)           --------   acaaaatgaatgtaaattgattacagacataacagaaatgacaacgtaaactttataataacacaataaaatagtaatcaaaattatacaattgcacgaa  20392800                                                    <---------AHL20(2)                                 <---------AHL20(2)<---------AHL20(2) -------AHL20(2)                 --------->AHL20(2)--------->AHL20(2) ------>AHL20(2)            <---------AHL20(2)  <---------ICU4 --------->GLK1(2) ------>AHL20(1)            --------->AHL20(2) <---------YAB1  --------->ARR11(3) -------AHL20(1)           --------->AHL20(2)  --------->ICU4  <---------ARR11(3) ----->AHL20(2)   <---------ANAC46           --------->YAB1   --------->RVE1(1)         ---------->DOF2 ->ANAC58         <---------ANAC58     --------->At5g28300    --------->CCA1(1)    ----------->GT1 ->ANAC58         <---------ANAC58    ----------->GT1  ----------->GT1     <---------AHL20(2)   taaattttctgaaattgttttcgtataaaaaaaatttaaacagtaaaacataattaaatgtaaaaaatctttgtgatttttttttttgtaaaaagacgta  20392900                            --------->AHL20(2)                         <---------AHL20(2)                  <---------AHL20(2)                                   --------->ARR11(3)                 --------->AHL20(2)                                    <---------AHL20(1)             --------->AHL20(2)                                        --------->AHL20(1)             --------->AHL20(1)                                  --------->TOE2(3)             <---------AHL20(2)                               <---------GLK1(1)             <---------AHL20(1)                               --------->GLK1(1)            ----------            <---------AHL20(2)                               --------->ARR11(3)        <---------ANAC58            --------->AHL20(2)  ----------->GT1              <---------ARR11(3)        <---------ANAC58     <-----------GT1---------->DOF2      ----------->GT1 ---------->DOF2               <---------ANAC46   gtagaatttacaaattaaatttaaaaggcataaaatgtataaacagataaaaaaacatataaagatttcttaatattttgcattttgtttcttgtcaata  20393000                                             <---------ANAC58                                          ----------->HVH21                                        <---------At4g35610                                        ----------->RAV1(2)                                        --------->At4g35610                                        --------->ZAT2                                        =============================RAV                                 ------>MYB83<---------ANAC58                                 ------>MYB46(1)                        --------->ATHB12                  --------->At4g35610   --------->O2                 <----------DOF2                 ------->TEIL  --------->MYB46(3)             <---------ANAC58              *TSS<---------At4g35610 <---------ALFIN1        <---------ANAC58              <--------            ----------->RAV1(2)<---------MYB55(2)             <---------ANAC46             <---------AHL20(2)           ------>MYB83       --------->ANAC58             <---------MYB52(1)          <---------RVE1(1)           ------>MYB46(1)    --------->ANAC58            <-------GAMYB<---------YAB1 <---------GLK1(2)      <-----------GT1         --------->ANAC46           <-----------RAV1(1)          --------->ARR11(3) -->CBF    -------->P   ---------->DOF2 --------->ANAC46 <---------MYB46(3)   <---------GLK1(2) <----   ggttttattttccaacctgcatctgccaaagcacccaactccacctgacttgtctgtgtctgttgcgttcactttcattggaatctcagattttttattt  20393100                  <---------ANAC58                  <---------ANAC58                  <---------ANAC46             <---------MYB46(3)             --------->MYB111(1)                                                                =====             --------->MYB55(2)                                                                 -----             --------->MYB111(2)                                                                =====             --------->MYB52(2)                                                              ------>NtERF2           <---------ANAC58                                                                 ---------           <-------GAMYB                                                                  ------>NtERF2           <---------ANAC58                                                               <---------ATERF1(1)         <---------AtMYB61                                                               --------->DEAR3(1)    <XXXXXXXXXXXXXXXXXXXMIR773B*                                                         --------->ANAC46 -AHL20(2)<---------MYB46(3)                <---------ALFIN1                            <---------LBD16 -----AHL20(2)<-------GAMYB        <-----------GT1     --------->ZAT14    <---------CCA1(2) <--------   ttttgtttgttttggttgttgcgagtttgtgactataaaacctctcccacttggttcttcactctcactgtttctcatctcttcgtcttctccgcctcct  20393200                                                                                        <---------ZAT2 ==================HOX2a_HOX2a                                                     --------->ANAC58 ->ZmHOX2a(1)           <-------TEIL                 <---------At4g35610           --------->ANAC46 ===================HOX2a_HOX2a                   <---------At4g35610              --------->ANAC58 >DEAR3(1)   ------>ZmHOX2a(2)         <---------ANAC58                ---------->DOF2 ------>NtERF2 -ALFIN1    <------ZmHOX2a(2)          <---------ANAC58 <---------At4g35610       ------>ZmHOX2a(1)   tcaatctcactccgatctctctacgattcattcgttctatggcttccattgctgcttctgcttctatttcccttcaagctcgtcctcgccaactggtctc  20393300                                                        --------->ATHB12                                                      <---------WOX13(1)                                                    --------->ATHB12                                                   <---------YAB1                                                  ------>ZmHOX2a(2)                                                 <---------At4g35610                                             ------>ZmHOX2a(2)                                   <---                                           <---------ARR14(2)                                    <---                                           <---------ARR11(3)                         ------>ZmHOX2a(2)                                           --------->ARR14(2)                        <------ZmHOX2a(2)                                           --------->AGP1                           --------->AGP1                                           --------->ARR11(3)                       <---------ARR14(2)                                           <---------AGP1              <<<<<<<<<TBF1<---------ARR11(3)          ------->TEIL                    <---------CCA1(2)<---------MYB46(3)       --------->ARR11(3)          <---------ARR11(1)<---------ANAC58<------ZmHOX2a(2)       <<<<<<<<<TBF1   <---------AGP1---         <---------GLK1(2)  <---------ANAC58--------->CCA1(2)  xxxxxxxxxxxxxxxx>smallRNA(i)      ----         <---------CCA1(2)<-----------GT1----------->ARR10<---------WOX13(1)       <---------CCA1(2)   tctcttccctcgaatctctcatcttgttttacttgttttgctgtagatctgatctgattgattgttgttcttcttcttcaattgtagatctaatttgcag  20393400                                                                                 --------->GLK1(2)                                                                                 ------->TEIL                                                                            --------->At4g35610                                                                         <------ZmHOX2a(2)                                                                         --------->CCA1(2)                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                     <---------HSFC1(1) <---------ARR11(3)                                         <------------------------ANAC81--------->ARR11(3)                                  <------NtERF2      --------->HSFC1(1)<---------CCA1(2) ------GLK1(2)>>>>>>>ZML2    <---------TOE2(3)       --------->HSFB2a(2)<---------AGP1 ------ARR14(2)              <---------AtMYB61       <---------HSFB2a(2)--------->AGP1              < ------>GLK1(2)     --------->ATHB12    <---------YAB1     <----------DOF2------>ZmHOX2a(2)<---------YAB1 ----->ARR14(2)    <-------TEIL --------->ALFIN1    <---------LBD16   ----------->ARR10  <-----------GT1   aatcgttttctgagttctaggttgatttgtttaggtggctctatgatttagttttctggaactttggctctgtagatctgatgaatctgttttactattc  20393500  Previous    Next  AGI:  At1g54580.1    Description:  ACP2 (ACYL CARRIER PROTEIN 2). Identical to Acyl carrier protein 2, chloroplast precursor (ACL1.2) [Arabidopsis Thaliana] (GB:P25701;GB:Q9ZVN1); similar to ACP3 (ACYL CARRIER PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT1G54630.1); similar to ACP preprotein [Brassica napus] (GB:CAA31517.1); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein-like (InterPro:IPR009081); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Photosystem II protein PsbW, class 2; (InterPro:IPR009806); contains InterPro domain Phosphopantetheine- Range:  from: 20393014    to: 20394682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version