Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ARR14(2)         --------->ARR11(3)         <---------ARR11(1)                                                                    ------         <-----------ARR10                                                                     <-----         <---------ARR11(3)                                                         --------->ARR11(3)         <---------ARR14(2)                  --------->ZAT6  ----------->GT1      <---------YAB1        <---------CCA1(2)                 <---------GLK1(1) <---------TOE1(3)  --------->ARR14(2)        <---------GLK1(1)        <---------AHL20(2)         <---------TOE2(3)  <---------ARR14(2)     <-------TEIL                --------->AHL20(2) --------->ATHB12 <---------TOE2(3)        ------- --------->DOF2                <----------DOF2      <---------ICU4<---------YAB1--------->CCA1(2)   aacaaagtgcatatcttattgtacagttttagactttaatttggataaccctactcattgccaaggttattatcgtttagggatatgattttgcaaagat  20353500                                                                         <---------TOE2(3)                                                                      --------->AHL20(2)   <---------ZAT6                            ------>NtERF2                         <---------AHL20(2)<---------ANAC46                      <---------HSFB2a(1)                 <---------ARR11(1)        <---------ANAC58                      --------->HSFB2a(1)                 <---------ARR11(3)     <---------RAP2.6(2) --->ARR11(3)       --------->ARR11(3)                    --------->ARR14(2)   <-----------RAV1(1) ----ARR11(3)      <------ZmHOX2a(1)                     <---------CCA1(2)  --------->GLK1(2)      <- -->YAB1       --------->TOE1(2)             <---------ATHB12    --------->AHL20(2) <---------ANAC58   aattctcccaatagaaacttaggaacttgccgagttctaaatttctaatgaagaaaaccatatctcataaaatttaagaatttgtggcttattgtgttaa  20353600                                                          <-----------TGA1                                                         --------->bZIP60(1)                                                         <---------TGA2(1)                                                         --------->ANAC58                                                         <---------bZIP60(1)                                                         --------->TGA2(1)                                                         <---------ANAC58                                                         <---------ANAC58                                                         --------->ANAC58                                                         --------->ANAC46                                                         --------->ANAC55(2)                                                         <---------ANAC55(2)                             <------MYB46(1)    <---------ARR11(3)                             <------MYB83       --------->ARR11(3)                                <--                             ----------->GT1    <-----------ARR10                                 <--                            --------->MYB46(2)  --------->GLK1(2)                                 ---                      --------------->AGL15--------->ANAC58            --------->AtMYB61         <---         ------>ZmHOX2a(1)  --------->MYB59--------->ANAC58    <----------DOF2                  ----- ----------GT1    ------->TEIL     --------->YAB1       <-----------STF1                    ---------   gttactaaatcctagagatgaatgcttagtttggtaataaaaaccaagaaaatctcattacgtcactttgagaccacaactaaacccgtttgaacaaagt  20353700                                                         <---------LBD16                                                        --------->MYB52(1)                                                   --------->YAB1                                                --------->ATHB12        --------->ARR14(2)                      <---------ICU4        <---------ARR14(2)                      --------->ATHB51   ----------->GT1                              -------->HAHB4                ----------->GT1  --------->DAG2                                <--------ATHB1            --------->ARR14(2) ---------->DOF2                               <---------YAB1         <-----------------AG ----MYB46(1)       ---------->DOF2            --------->ICU4         <-----------------AGL1 ----MYB83<---------LBD16                      <---------ATHB51       <---------LBD16 -------->GT1------>NtERF2    --------->AHL20(2)<--------HAHB4       --------->MYB52(1) --------->ARR11(3) ------MYB46(3)    <---------ATHB12          --------->YAB1--------->LBD16<---------ARR14(2)    ----- ---->ALFIN1--------->LBD16   <---------AHL20(2)--------->YAB1      <---------ZAT14 ---------->DOF2 ->DOF2<---------GLK1(1)     --------->AHL20(2)--------->AHL20(2)   <---------REM1(2)   <---------ARR11(3)   gggtaaagtaaatccggcccaataaagcccatttatttccaagagaataataattagaaaccggagagacttcacggatagggtaaaaaagaactcagag  20353800                                                 <---------ICU4                                                 --------->YAB1                                                <---------ATHB12                                              --------->WOX13(1)                                 <---------HSFC1(2)                        --------->ALFIN1    ------------>CBF                      <---------ANAC46    --------->At4g35610              ---------->DOF2                      <---------ANAC58    <---------At4g35610           <---------At4g35610               <---------AHL20(2)<---------HSFB2a(1)                    --------->At4g35610           <---------AHL20(2)    --------->HSFB2a(1)               ----------->HVH21    ----------->GT1   <---------ANAC58 <---------At4g35610--------->MYB46(3) ------>GT1--------->AHL20(2)    --------->HSFC1(2)       *TSS<----------DOF2   gttaatcggaaaaataaatatttggggtgaagagaagcttcttctgctcaatcatgtctaacaactttggtgacagctaaagaaaaactaagttagaaga  20353900                                                            ------>NtERF2                                                            --------->LBD16                                                           --------->ANAC58                                  ------>ZmHOX2a(2)        --------->ANAC46                                 --------->GLK1(1)         --------->ANAC58                                 <------ZmHOX2a(2)      --------->ARR14(2)                      <----                                 <---------GLK1(1)      <---------ARR14(2)                      -----                                <---------AGP1          --------->GLK1(2)                      ------                                --------->ARR11(3)  ------>ZmHOX2a(2)                          ------                                <---------ARR11(3) <------ZmHOX2a(2)                           ------                                --------->ARR14(2)--------->ARR14(2)      --------->LBD16    <-------                         --------->AtMYB61  --------->MYB46(3)--------------------->WRI1     --------             ---------->DOF2    <---------ARR14(2)<---------ARR14(2)    --------->DEAR3(2)<---------ANAC58          --------->TOE2(3)     <-----------ARR10<---------SPL7        --------->MYB52(1) <---------ANAC58          --------->TOE1(3)    <---------CCA1(2)--------->DEAR3(1)   <---------SPL7  <---------At4g35610   atatttagataaccttcaagctcgagaccactcggatctctctctaatcgccgatcggaatccgccatgggagtaccggcgttctacagatggctcgctg  20354000                          <-------GAMYB                      <---------bZIP60(2)                      <---------bZIP60(1)            <---------ANAC46                      ============MYC_MYB--------->MYB52(1)                      --------->O2       ------>MYB83<---------ANAC58       --------->LBD16--------->TGA1a    ------>MYB46(1)                                    ---------      --------->ANAC46--------->TGA2(1) --------->MYB55(1)                                  ---------  --------->GLK1(1)   <---------TGA1a  <---------MYB46(2)                                  --------->ZAT6  <---------GLK1(1)   <---------O2     <---------MYB59                                   ------>MYB46(1) <---------ARR14(2)   --------->bZIP60(1)-------->P  <---------ANAC58                    ------>MYB83 --------->ARR14(2)   <---------ANAC46<---------HSFC1(2)                               <---------MYB59 -----WRKY18(1)       ============================MYC_MYB                              --------->AtMYB61 ->NtERF2             <---------TGA2(1)<---------MYB111(1)                           <-----------ARR10 --->WRKY38(1)       ----------->STF1 --------->HSFB2a(1)     <---------MYB59    --------->At4g35610 ----->HVH21        <---------TGA2(2) <---------HSFB2a(1)     --------->TOE2(3)<-----------GT1 --->WRKY12        ----------->HVH21  --------->HSFC1(2)  ----------->HVH21 <---------GLK1(1)   ----- --At4g35610       ----------->TGA1  ------->TEIL   --------->ALFIN1        --------->bZIP60(1)------ ->At4g35610 --------->WOX13(1)  >>>>>>>>>TBF1   <---------AtMYB61    ------>ZmHOX2a(1)<---------MYB46(2)   accgatacccgaagtcaattagtgacgtcgttgaagaagaacctaccgatggaggtcgtggtgaccttattcctgttgatatcaccagacctaaccctaa  20354100                                                                                              <------                                                                                              <------MYB46(1)                                                                                <---------At4g35610<-                                                                            <---------REM1(1) <------MYB83 >TOE1(3)                               --------->WOX13(1)               <-----------RAV1(1) -------- >TOE2(3)                    <---------YAB1--------->YAB1         ---------->DOF2         --------->ATHB12 ---->RAP2.6(3)     ------->TEIL  ----------->GT1           ------>ZmHOX2a(1)   --------->At4g35610<- --->MYB52(1)      <---------CCA1(2)  <---------YAB1<-----------GT1 --------->DAG2       --------->ICU4   cggcttcgaatttgataatttgtatctcgatatgaatggtatcattcatccttgtttccatcctgaaggaaaggtatgttgtagctcagaaatgtttggt  20354200                                                         <---------ANAC46                                                       <---------MYB46(3)                                                    <---------ANAC46                                                    <------MYB46(1)                                                    <------MYB83  <---------YAB1                                                   --------->MYB55(2)                                                   --------->MYB111(1)                                                   <---------MYB46(3)                           <----                                                   <---------AtMYB61                          <------       <---------At4g35610                         --------->MYB46(2)<---------YAB1           ------- ---MYB46(3)                              <---------ZAT14--------->ALFIN1             <---------TOE1(2) --------TOE2(3)                     <---------ATHB12 <---------AtMYB61         --------->ARR14(2) ->MYB59  --------->ATHB12         --------->WOX13(1) --------->ALFIN1     <---------ANAC46   <------ --------TOE1(3)                 <---------ATHB12  --------->MYB111(2)<-----------RAV1(1) <----------   tagggtttgagttgatttgttgtatgagaaatgaaatcaatgagtttagtagtttggtggtggagaagattattgttgtctgtattcgtagtttagtaca  20354300                                                          <---------WRKY12                                                        <-----------HVH21                               <----------DOF2         --------->ANAC58                               <---------DAG2          --------->bZIP60(2)                              <---------ANAC58         --------->ANAC58 <---------YAB1          <---------MYB46(3)            --------->ANAC46 -----ZAT6               <-----------RAV1(1)         <---------ALFIN1 ---ZAT14        <---------ZAT14                   ------>ZmHOX2a(1) -->ZAT14        --------->ZAT14              <---------ANAC58                                     -- ---ZAT18 <------ZmHOX2a(1)   <---------ANAC58<---------ANAC58                                   ---- -----AtSPL8     --------->ZAT18     ------>ZmHOX2a(1)------->TEIL                           <-------   gttatgagagaaggagaagtatactagttgttgcttttcctcgattttgcttcctgcacgtcaatggaagcgatggccaacttggtgatactagacgtag  20354400  Previous    Next  AGI:  At1g54490.1    Description:  AIN1 (ACC INSENSITIVE 1); 5'-3' exonuclease/ nucleic acid binding. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to hypothetical protein OsI_013396 [Oryza sativa (indica cultivar-group)] (GB:EAY92163.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43007.1); similar to hypothetical protein OsJ_012378 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28895.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Exonuclease, Xrn2 (InterP Range:  from: 20353858    to: 20360583    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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