Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      --------->YAB1    <---------ALFIN1                                         <---------ICU4            <---------AHL20(2) ------->ARR11(3)           <---------MYB52(1)            --------->YAB1           <----------DOF2 --------ARR11(3)          --------->At5g28300           ============================================ ------->ARR14(2)          <-------GAMYB                 <---------------AGL15     <---------DAG2 --------ARR14(2)         ----------->GT1             <---------AHL20(2)          <---------ANAC58 ----------ARR10  <---------DAG2  <----------DOF2    --------->AHL20(2)           <---------ANAC58 -- -------CCA1(2)   <----------DOF2<---------ICU4     <---------WOX13(1)      <---------AHL20(2)    --- ---->YAB1        ------>ZmHOX2a(1)  <---------At5g28300<-----------------AGL1  <-----------GT1------ ---DOF2<---------ZAT2----------->HVH21  <---------MYB52(1) --------->ICU4<---------YAB1      <------   atatctccacagcttgtgtcctttatgaccgttaatctttaccgctaatttttgatttattcataatggtaagattatttttttgctttttatttgataa  20326300                                                                              <---------YAB1                                                                            --------->YAB1         <-                   <---------YAB1           <---------AHL20(2)             <---------YAB1         <--    <---------At4g35610                    --------->AHL20(2)  --------->AHL20(1)  --------->AHL20(2)    --------->At4g35610                 <---------------AGL15  <---------AHL20(2)  <---------AHL20(2) =======================================================MADS_MADS     <---------ANAC46       -------- ------->DAG2    --------->YAB1         --------------->AGL15  --------->AHL20(2) <---------AHL20(1) ------->DOF2   <---------YAB1   <-----------GT1              --------->AHL20(2)  --------->AHL20(2) --->YAB1--------->CCA1(2)   --------->AHL20(2)      <---------AHL20(2)    --------->ICU4   <-------- ---YAB1--------->ARR11(3) --------->AHL20(2)     ------->TEIL<---------AHL20(2)  <---------AHL20(2)   taaagcagatgatatggtatgatgacaatttttatataccttctattaaatgtattttttttaaaaaaattggtgtgatgataatttttttaaaaaggtt  20326400                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                       --------->AHL20(1)                                                                  --------->DOF5.7(2)       <---------AHL20(2)                                         <---------MYB52(1) <---------ANAC55(2)       --------->AHL20(2)       --------->ICU4           --------->YAB1<---------AHL20(1) --------At5g28300      <-------TEIL                --------->AHL20(2) <---------AHL20(2) ---------GT1      --------->AHL20(2)           <---------YAB1  ----------->GT1 <---------YAB1  <---- --->GT1        <---------HSFB2a(2)             <---------TOE2(3)--------->At5g28300 --------->ANAC55(2) -TOE2(3)       --------->HSFB2a(2)       <-------TEIL  <---------YAB1 --------->AHL20(2)       -----   ttactgtatttaaattttctaaaaaatacatgtaaacatgaaaatacattaagataaaatgataaaccgttaatttatttttctgataagtattctaaaa  20326500                                                                <---------ICU4                                                                --------->YAB1                                                               --------->ICU4                                                          --------->YAB1        <------MYB46(1)                                               --------->AHL20(2)               <------MYB83          >>>>>>>>>RAP2.2                      <---------AHL20(2)       <-------TEIL        <---------ARR11(3)           <---------AHL20(2) --------->AHL20(2)     --------->MYB59       <---------CCA1(2)            <---------AHL20(2) --------->YAB1   <-----------------AG -----ARR11(3)                      --------->AHL20(2)--------->AHL20(2)------->TEIL ---->ARR11(3)          --------->TOE2(3)  <------ZmHOX2a(1) --------->YAB1 <---------ARR14(2)   tctacttatatatctaaacttataaaacttaaaaacaaataaataggatttaaaaaataaaaataatcatcatgtacatatttggtatggaatccaaaac  20326600                                    <---------ANAC58                                    <------MYB83                                    <---------ANAC58                                    <------MYB46(1)                         <----------DOF2                                   --------->MYB59                       <---------TOE2(3)                                   --------->MYB111(1)                   <---------TOE1(3)                               --------->ATHB12                     <---------ICU4                            <------------CBF                        --------->ATHB12                         ----------->RAV1(1)                       --------->ICU4                        --------->ANAC46                           <---------YAB1                      --------->ANAC58  <---------ANAC58         <---------ICU4                      --------->ANAC58  <---------ANAC58         --------->YAB1                 <----                      --------->ANAC46 <-------TEIL             <---------YAB1                  <----                  <-----------HVH21--------->MYB46(2)        ------>ZmHOX2a(1)               <-------   aaatacaaaattttgacaaatgtcacacaacattgattaggtgcttatcaagaagattagctccttatcatgattaagctttaatacgaagactcatttc  20326700                                                                          <---------ANAC58                                                          <---------ZAT14 <---------ANAC58                                                      --------->ATHB12    <---------ANAC46 -----ANAC58                                <---------ARR14(2)    <------ZmHOX2a(2)               --- -----ANAC58        *TSS--------->GLK1(2)   --------->ARR14(2)   <---------ARR11(3)              <--- --CCA1(2)    ------------>CBF              --------->GLK1(2)    --------->ARR11(3)          --------   ttgactaagacttgacttcaatggcgattctaaaaccctaagcgagaatccaaaaatgagtgaagaagatcacattgcttaggtgaagaagtctccgaag  20326800                                                                                                    <           <---------ARR11(3)                                                       --------->SPL7  < ------>GLK1(2)                                --------->GLK1(1)                  <-----------HVH21 < ------GLK1(2)                                 <---------GLK1(1)                  <---------SPL7   <- ->LBD16   --------->ARR11(3)          --------->MYB52(1)           ----------->HVH21   <------ZmHOX2a(2)   aatctctcaaaactatcttcgtcttctcttacaattccgacgaacagagatttccattctctctccaagtccgacgagttcaagcgtccgatcgatgagt  20326900                                       --------->ANAC58      --------->ZAT2                   --------->ANAC58      --------->At4g35610          <---------MYB46(3)      <---------At4g35610       <------MYB46(1)      <---------ZAT2            <------MYB83                                                      <-- ---------ANAC58               <---------AtMYB61              ===========================HOX2a_HOX2a- ---------ANAC58               <---------MYB46(3)             ------>ZmHOX2a(2)         ---------->DOF2 ---------ANAC46               --------->MYB55(2)    --------->CCA1(2)             <---------ARR14(2) --------ZAT2               --------->ATHB12      ----------->ARR10               <------ZmHOX2a(1)<-   tagcttggagctcgcagtctgttcttgagacgattggtggtaagaaatcgatgagatttgatgatcccatggatgagttcaagaggaatcgaaagatgga  20327000    <-------TEIL   --------->ARR14(1)   --------->CCA1(2)  --------->ARR14(2)                                                           <---------MYB52(1)  --------->ARR11(1)                                             --------->ANAC58  <---------ARR14(2)                                      >>>>>>>>>SARD1     <---------ANAC58 <---------HSFC1(2)                                       >>>>>>>>>CBP60g    <---------ANAC46 --------->HSFC1(2)                                 --------->HSFB2a(2)      <---------ANAC58 --------->HSFB2a(1)                   <---------ZAT6--------->ANAC46     <---------ARR14(2)     <--- <---------HSFB2a(1)            <---------ANAC46    <---------HSFB2a(2)   --------->ARR14(2)    <---- ----ZmHOX2a(1)              --------->ALFIN1   <---------ARR14(2)        --------->GLK1(2)   ------- ---------->ARR10      ----------->HVH21        --------->ARR14(2)    <------NtERF2          -------- --------------------WRI1---------->DOF2        <---------GLK1(2)--------->ANAC58       --------->DEAR3(2)   ggaagattcgaagaaggtaatcgatgtgaaagtggctgagagtgataagggattcgcgaaatttggcaaggcagaggttccgtttcatataccgacgtta  20327100                                               <----------DOF2 ------TOE2(3)       --------->ARR11(3)        ------>ZmHOX2a(1)           --------->ZAT14         -- -----DOF5.7(2)      <---------ARR11(3)   --------->YAB1                   <---------ZAT14        >>> -->DOF5.7(2)        <---------GLK1(2)   <---------ATHB12         <---------HSFB2a(2)      <-------TEIL ->TOE2(3)  <------ZmHOX2a(1)       --------->YAB1           <-----------RAV1(1)        <---------DEAR3(2)   acgaagcctcaagaggagtataagattttggtagacaatgctaataatccttttgagcatgttttgttggagaagagtgaagacggtcttcggttcattc  20327200  Previous    Next  AGI:  At1g54440.1    Description:  3'-5' exonuclease/ nucleic acid binding. similar to 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G35910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67485.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain 3' (InterPro:IPR002562); contains InterPro domain Helicase and RNase D C-terminal, HRDC; (InterPro:IPR002121) Range:  from: 20326720    to: 20331734    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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