Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------At4g35610                                --------->At4g35610                           <---------GLK1(1)                           --------->GLK1(1)                          <---------ARR11(3) ----------->GT1       <---------TOE1(2) --->GAMYB           --------->TOE1(2)                                    <---------ICU4 -->MYB52(1)        --------->YAB1<----------DOF2         --------->REM1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->RAV1(1)       ----------->GT1 ---------->DOF2      <-------TEIL    <---------YAB1 ->ANAC46  --------->ZAT6 --------->ARR11(3)     <----------DOF2  <---------CCA1(2)   agaaggaaatatcacactaaaatcgtaagatttctgcttaaagtcaaaatactttaagctacattttcaaatctcattcttgcagactcgattcagacca  20307200                                                                                             ------->TEIL                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                          <---------ANAC55(2)                                                                                          --------->ANAC55(2)                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                         ------------                                                                                         ------>ZmHOX2a(2)                                                                                         ------------                                                                                         <-------TEIL                                                                                        <------ZmHOX2a(2)                                                                                       --------->AGP1                                                           <---------ICU4              --------->ARR14(2)                                                          --------->ICU4               <---------ARR14(2)                <----------ID1                  <---------ARR11(3)         ------->TEIL<---------GLK1(2)  ---------->DOF2                           --------->ANAC46  <-----------GT1        ----------->ARR10   gaaataaagacatccaatacgagaaaactgagacccagacaacttcacgagataatagcaaaaattacagaaccatgaatctcagaacagatccgtacct  20307300                                      --------------->AtSPL3                                    <---------WRKY18(1)                                    <-----------GT1                          --------->ATHB51                          <---------AHL20(2)                          <---------ICU4                    <---------ZAT2  ------------------>SPL14                    --------->At4g35610                    <---------At4g35610             <---------ZAT2        --------->WRKY12  <---------------AGL15   --------->ATHB12--------->SPL7  --------------->AGL15   --------->AHL20(2) <-----------------AGL3  --------->ICU4 <---------SPL7 ->ARR14(2)  --------->At4g35610   --------->WRKY38(1) ->SPL7      --------->GLK1(1)     ----------->HVH21 --ARR14(2)  <---------GLK1(1) <------MYB46(1)                         --------->ANAC58            -- --->AtSPL8  <---------At4g35610<<<<<<<<<<MYB80                        --------->ANAC58          ---- --->AtSPL3  --------->ZAT2    <------MYB83                          ---------->DOF2       <---------REM1(1)   gcttcttatactgggagctctcagctaattatttggtttgaccgtacaaagatgaaacctttggagaattcaaaagcaaatgaaatcgatgtgaagtagc  20307400                                            --------->TOE1(3)                                        <---------ARR14(2)                                       <------NtERF2                                      --------->LBD16                                     <---------ANAC46                                    <---------LBD16                                  --------->ALFIN1                                  <---------DEAR3(1)                  ----------->RAV1(1)       --------->TOE2(2)        --------->ALFIN1                 <---------MYB46(3)       --------->TOE2(3)        <-----------RAV1(1)             <---------DEAR3(1)       --------->TOE1(2)   --------->DAG2   --------->TOE2(3)  <---------LBD16 --------->GT1            ---------->DOF2--------->GLK1(1)     --------->LBD16 ------>DOF2  ----------->GT1 --------->ALFIN1               <---------LBD16                    -----   aaagtgaaaccttggaatgagaaaatcaaaaagtgtgtggcggaaaccttacaaatgaaaaatcccgcggttcaacagataacacatttttcaaaaaatg  20307500                                                                                                 <---                                                                                               <-----                                                                                           ------>NtERF2                                                                                          --------->ETT(2)                                                                                     <-------GAMYB                                                                                     --------->At4g35610                                                                            ------------>CBF<------NtERF2                                                     <---------YAB1     <----------DOF2  ---------->ID1                                                    *TSS              ---------->ID1 <---------At4g35610                              ------->TEIL    <----------DOF2    <---------MYB52(1) --------->MYB52(2) ---->ATHB12              ------->TEIL<---------At4g35610    <---------At4g35610 <-----------HVH21  -   tttggggtttagtttttttttgtttgtgtatgtatgtgtctgcttcttctttattttgtttgaagctgttttgtctttttcaatgtcagttgtcgccatc  20307600                                           <---------AHL20(1)                                           <---------AHL20(2)                                           --------->AHL20(1)                                          <---------AHL20(2)                                          --------->YAB1                                          --------->AHL20(2)                                         <---------YAB1                                       --------->YAB1                                       <---------ICU4                                      --------->ICU4                                      <---------ATHB51                                      <---------AHL20(2)                                   <---------AHL20(2)                                  <---------AHL20(2)                               <---------AHL20(2)                                   <---------AHL20(2)             <----------DOF2  <---------AHL20(2)                                   --------->AHL20(2)          ------->TEIL        --------->AHL20(2)                                   <---------AHL20(2)       <---------YAB1      <---------AHL20(2)                                  <---------RVE1(1) --------RAV1(1)          <---------AHL20(2)                                  <---------ARR11(3) ----At4g35610       <----------DOF2  --------->AHL20(2)                      --------->ARR11(3) ---------->GT1    ---------->ID1 --------->AHL20(2)<---------ANAC46     ------>ZmHOX2a(2) <---------CCA1(2)   tgttgtaatatgaatctttttgtctttttttatttattaaataattatattttctcgtgtttaacaaaaaatagatcggagatttttaaattcaaatctc  20307700                                                                  ------>ZmHOX2a(2)                                                                 <---------At4g35610                                                                 --------->At4g35610                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                                               <---------ZAT14                                                          ------>ZmHOX2a(2)                   <------                                    --------->PCF2       <------ZmHOX2a(2)        <---------YAB1                                    <---------TCP15(1)  --------->ARR11(3)       --------->AHL20(1)                                   <---------PCF2       <---------AGP1          --------->AHL20(2) --              --------->DEAR3(1)  <---------ANAC58      <---------ARR11(3)      <---------AHL20(2) --            <---------At5g28300   <---------ANAC58      <---------ARR14(2)     --------->AHL20(2)  <-       <---------ARR11(3)        <---------MYB46(3)     --------->ARR14(2)     <---------AHL20(1)----      <---------GLK1(1) <-----------RAV1(1)             --------->AGP1         <---------AHL20(2)<---   tctattcgaaatctcaccgctctatattgttgcattgggtcccattctcaagtctctagatctagtgatctgcattttcaaattattttagttgagacgg  20307800                                          <---------YAB1                                         --------->AHL20(1)                                         <---------AHL20(2)          --------->LBD16                <---------AHL20(1)                         <------ZmHOX2a(2)      --------->ARR14(2)                --------->YAB1                             <---------ARR14(2)      <---------ARR14(2)          ----------->GT1                                  --------->ARR14(2)     <---------GLK1(1)            <---------ZAT6                                   --------->AGP1    ---------->TaMYB80          <---------ANAC46                           <---------ICU4 ---DEAR3(1)--------->REM1(2)  --------->ALFIN1                <---------YAB1<---------YAB1 --------->GT1                 <---------AtMYB61             --------->YAB1--------->ATHB12         < ------->ALFIN1               <---------ZAT14            <---------YAB1   --------->ICU4         <--- --------ANAC46              <-----------RAV1(1)         --------->ICU4 ===================HOX2a_HOX2a ----->ALFIN1      --------->AHL20(2)   --------->AHL20(2)  <---------YAB1<---------YAB1        ----- ------ANAC46      <---------AHL20(2)  <---------YAB1 <---------TOE2(3) <------ZmHOX2a(1)--------->AtMYB61   tgtgtgaatatccgtgaacaaataaatgctactgtggtgttattatatttgagtttgagattattatactaagaggatgattacagatcgaccacaaatt  20307900                                              ------>ZmHOX2a(2)                                              <-------TEIL                                              ===========================HOX2a_HOX2a         --------->MYB52(1)                  ============================HOX2a_HOX2a        --------->ICU4                       <------ZmHOX2a(2)    --------->ZAT18           =======================HOX2a_HOX2a    <---------ZAT14           <------ZmHOX2a(1)                                                 <----    --------->ZAT14          <----------ID1 --------->ARR14(2)                                 <-----    <---------ZAT18       ---------->DOF2   <---------ARR14(2)                                 ------ -----------GT1    <---------TOE1(3)        ------->TEIL                           --------->HSFB2a(2) ------AHL20(2)    <---------TOE2(3)   --------->MYB52(1)         <------ZmHOX2a(1)<---------HSFB2a(2) ---->AHL20(2) <----------DOF2======================HOX2a_HOX2a <---------TOE2(3) --------->REM1(2)   ttatactgtactaatggttttaaggctaaaaaggactaatctaatggatccattttgacatatgtttaggaatcgatttggccttgtagaagtttagttt  20308000                                             <---------ANAC46                                  --------->ALFIN1                                <---------TGA1a                                           <----------                           <---------At4g35610                                            -----------                       ----------->HVH21 <---------ZAT14                    --------->YAB1------>ZmHOX2a(1) -------GT1        <---------ANAC58 <------MYB46(1)                         --------->AHL20(2)   ---- ----ZAT14         <---------ANAC58 <------MYB83             ------>ZmHOX2a(1)           --------->TOE1(3) --->ZAT14 --------->ANAC46--------->At4g35610        <---------CCA1(2)  --------->YAB1  --------->TOE2(3)   actagtcccaaacacagcattgcctctgaagcagaagtgggtctgttctgtgaagcatctctcctctctaaactacaataatatcagtattccttaatag  20308100  Previous    Next  AGI:  At1g54385.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT3G03970.3); similar to binding [Arabidopsis thaliana] (TAIR:AT3G03970.2); similar to binding [Arabidopsis thaliana] (TAIR:AT3G03970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23490.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Survival motor neuron interacting protein 1; (InterPro:IPR007022) Range:  from: 20304793    to: 20307552    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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