Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   ------->GAMYB                --------->ANAC46               ------>MYB46(1)               ------>MYB83              --------->MYB52(1)             --------->AtMYB61             ------->GAMYB            <---------MYB52(2)            <---------MYB55(2)                                                       ------->TEIL            --------->MYB46(3)                                                       <---------ARR14(2)           -------->P                                <---------YAB1          --------->ANAC58           --------->ANAC58                  --------->YAB1                  --------->ANAC58       --------->TOE2(3)      --------->MYB46(3)   <---------ICU4        ------>ZmHOX2a(2)    ----------->RAV1(1)<---------YAB1   --------->YAB1                 <---------ARR11(3)       <---- -TOE1(2)  --------->ANAC58  -------->P --------->TOE2(3)      <---------CCA1(2)     --------->ARR14(2) -TOE2(3) --------->WOX13(1)--------->WOX13(1)    <---------YAB1       --------->ARR11(3) --------->ANAC46   gatgaacaacatcaaccaacgcagtatgatcaaccaattcaatcttatcaacatcattatccatcgtctcttcgatcttaggcaacgtatccacatcaac  20304200                                                                              --------->GLK1(2)           <---------WOX13(1)                                                --------->ARR14(2)         --------->ATHB12          <------NtERF2                      --------->At4g35610      ---------->DOF2             --------->ANAC58                    <---------At4g35610     ------>ZmHOX2a(1)            --------->ANAC58  <---------At4g35610      <---------GLK1(2)------>ZmHOX2a(1) -----ALFIN1 <---------WRKY18(1) --------->ATERF1(2)--------->At4g35610      <---------ARR14(2)   actcttcctaaagattgacccaagttcgatttcagccagcaatcttctcttctctgcttccaatagtctctgagcttcagattcttgttccttctcctca  20304300                                                                    <---------CCA1(2)                                                                  <---------DAG2<---------ARR11(3)                                                                  <----------DOF2<------ZmHOX2a(2)                                                            <---------HSFB2a(1) --------->ARR14(2)                                                            --------->HSFB2a(1) --------->ARR11(3)                                                            --------->HSFC1(2)  <---------ARR14(2)                                                            <---------HSFC1(2) <---------GLK1(1)                                                           <---------YAB1      <---------At4g35610                                                         <------ZmHOX2a(1)     --------->At4g35610  <                                                         ================================HOX2a_HOX2a<                                               <----------DOF2   --------->TOE2(3)------>ZmHOX2a(2) <                                       <---------ZAT18   ===============================HOX2a_HOX2a--   aaattcaaactttcttcaagggctccatcaactcgatattgctcacttcctttagagaaggatgattcctttatctcttgcagatccctattgtttacag  20304400                                                      ------>ZmHOX2a(2)                                                    <---------ARR14(2)                                                    <---------ARR11(3)                                                    --------->ARR11(3)                                             <---------ANAC58                                             <---------ANAC58             --------------->AGL15    ------>NtERF2                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)---------->DOF2  --------->At4g35610                       <---------HSFC1(2)           <---------ANAC58 <---------ATERF1(1)                        --------->HSFC1(2)           <---------ANAC46 <---------RAP2.3(1)                  <------ZmHOX2a(1)              <-------GAMYB ---------DEAR3(1)                <---------ANAC46  <---------AGP1<---------ZAT14 ---------RAP2.3(3)--------->ATHB12   =======================HOX2a_HOX2a <---------ANAC58 ---------RAP2.3(2)<---------ICU4 <---------ANAC58  --------->ARR14(2)<---------MYB52(1) ------->RAP2.6(3)<---------YAB1  <---------ANAC58 <---------CCA1(2) <---------At4g35610   <---------   agacggctccatcttccatagttattgcatcgttttgcgaggaagaagcttgtggatctatctcagagttcagttgcttcttaaagtcgctctctttttc  20304500                                                                      --------->ARR14(2)                                            <---------ARR14(2)        <---------ARR14(2)                                      <---------MYB46(3)              <-----------ARR10                                 --------->ZAT18                     <-------GAMYB                  <                                 --------->ZAT14                     <------NtERF2                ---                                 <---------ZAT14            --------->YAB1 --------->ANAC58       <--                             <------NtERF2  <---------GLK1(2)      <---------ANAC46               <--                 <---------TOE2(3)   --------->ALFIN1       <---------ICU4 *TSS     --------->TOE2(3)                 <---------TOE1(3)   <---------AtMYB61     <---------YAB1  --------->ANAC58       ---         --------->LBD16    --------->LBD16 --------->ARR14(2)    <---------LBD16   --------->TOE1(3)       --------->LBD16     --------->DEAR3(1)              --------->ICU4 <---------ZAT18        ---- -DOF2 <---------LBD16    <---------LBD16--------->ETT(1)--------->YAB1   --------->ZAT18  ----------   taatccatccccagaaattgaggttttcgccggagtacagtggtcggaatcggagtttgtcatcatgaggcggatgtgcgcaaaacccttaacgagtgaa  20304600             --------->HSFB2a(2)             <---------HSFC1(1)             <---------HSFB2a(2)             --------->HSFC1(1)                               <-----------GT1 ------------CBF               --------->HSFB2a(2)       --------->ICU4 ------>AHL20(1)          <------------CBF               <---------AHL20(2) -------AHL20(2)        <---------AHL20(2)               --------->AHL20(2) -------AHL20(1)        --------->AHL20(1)          ----------->GT1 --------->TOE1(3) ------>AHL20(2)        <---------AHL20(1)          --------->LBD16 --------->TOE2(3) ----->AHL20(2)         --------->AHL20(2)         ----------->GT1-------->P                   >>>>>> ->GT1  <----------DOF2--------->AHL20(2)         <---------LBD16 ------->TEIL         --------->AHL20(2)   taaattgttccttttctcgaagctaataaattgctcgaaccggtttgattaaaccggaaaaaattatcaaccttgaaccggttctatgtataaatatagc  20304700                                  --------->ARR11(3)                                  <---------ARR14(2)                                  --------->ARR14(2)                                  <---------ARR11(3)                                 <---------GLK1(1)                                 --------->GLK1(1)                                 <---------CCA1(2)                            <---------LBD16                          <---------ARR14(2)                          <---------GLK1(2)                          --------->ARR14(2)                        --------->LBD16                      <---------LBD16                       <----------DOF2                    <-----------GT1               --------->ANAC46              --------->LBD16 --------->LBD16     --------->ANAC58             --------->LBD16------>ZmHOX2a(2)     --------->ANAC58            <---------LBD16<------ZmHOX2a(2)    <---------ALFIN1      <----------DOF2            <--- >>>>>>>>>>>LFY    --------->KAN4(2)            --------->ANAC46     <---------DAG2           -------   caatgtgttctcatcccggattataccggatccgcatatctgctaattccacacaccattctcttttgaagccttttgtactaacatcgtttatattctt  20304800                                                   <---------ARR11(3)                                                   --------->ARR11(3)                      <---------AHL20(2)                                                  --------->REM1(1)                       <---------AHL20(2)                                          --------->GLK1(2)                         --------->ANAC58                                         <---------ARR14(2)                         <---------ANAC55(2)                                         <---------ARR11(3)                         --------->ANAC58                                         --------->ARR14(2)                         --------->ANAC46                                         <---------GLK1(2)                          ----------->GT1                                        --------->HSFB2a(1)                         --------->ANAC55(1)                                        <---------HSFB2a(1)                         --------->ANAC55(2)       --------->AtLEC2                 <---------HSFC1(2)                     ------->GAMYB --------GT1                            --------->HSFC1(2)               --------->ANAC46 --------->AHL20(2) -->TOE2(3)                            ----------->ARR10         <-------TEIL <---------MYB52(2)   aacatttccatacaaaacaaaatgagaacaacaagtagaagaagattctactacatcttgtatcaagttcattacaaacaactaacacgtaattaaatag  20304900                                                                                 --------->YAB1                              --------->TOE1(3)                              ------>MYB83                              --------->TOE2(3)                              ------>MYB46(1)                      <---------YAB1                                        ----------->RAV1(1)                 --------->REM1(1)                                         ------->GAMYB                 --------->ZAT6                                           <---------MYB52(2)                --------->ZAT14                                           --------->MYB46(3)                <---------ZAT14               ----------->GT1      <---------ZAT14             <---------At4g35610          --------->YAB1           --------->ZAT14            <------             --------->At4g35610   --------->ZAT6    --------->YAB1<---------ZAT18       <---------YAB1   ctaaactactctctctgctacactacgattaaacttaacaccaataagaggtgaatcatgtagggacagtgtagtaaccaacatcatcatcttgattcac  20305000                                       --------->GLK1(1)                                       <---------GLK1(1)                                      <---------ARR11(3)                                  ---------->DOF2                           <---------ALFIN1     --------->YAB1                           --------->AtMYB61    --------->MYB52(1)                    <-----------GT1                         ------>NtERF2--------->ARR11(3)                        <<<<<<<<<TBF1     ---    <---------ARR11(3) --------->MYB46(3)      --------->ICU4                <<<<<<<<<TBF1     <----- -----GT1     <---------ANAC46----------->RAV1(1)                         <<<<<<<<<TBF1--------->MYB52(1)   catcaatatcacagttgcgaagagagccaccacaacaaaagatatcgcaataacgagtttggcatagctcatcttcttcttcttcttcttaccggttatc  20305100  Previous    Next  AGI:  At1g54380.1    Description:  spliceosome protein-related. similar to spliceosome protein-related [Arabidopsis thaliana] (TAIR:AT2G42510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67777.1); contains InterPro domain Survival motor neuron interacting protein 1; (InterPro:IPR007022) Range:  from: 20301632    to: 20304575    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g54385.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT3G03970.3); similar to binding [Arabidopsis thaliana] (TAIR:AT3G03970.2); similar to binding [Arabidopsis thaliana] (TAIR:AT3G03970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23490.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Survival motor neuron interacting protein 1; (InterPro:IPR007022) Range:  from: 20304793    to: 20307552    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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