Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  <--                        ------->TEIL       <---------TOE2(3)                                    -----                  <-------TEIL            ---------->DOF2                                  ----------                 <--------P    --------->AHL20(2)                                    <------ZmHOX2a(2)              <---------TOE2(3)--------->YAB1--------->YAB1                    =============HOX2a_HOX2a    ---------->DOF2   <---------ZAT18----------->GT1                           <------ZmHOX2a(1)<----   ttgagagaaagttgatgaggttgatgcacttaataaaaaatgtttaaagataagtttttgtctactatttgaacagggttaggagggatcagtatgtgaa  20290100           <---------WOX13(1)         --------->ATHB12 ------->ANAC58 --------ANAC55(2)                                                                                  < ------->ANAC55(2)            ----------->GT1               <-----------RAV1(2)                 ----- ------->ANAC46              ----------->GT1          --------->REM1(1)                      -------- ------->ANAC55(1)     <---------ANAC46               --------->MYB46(3)                     -------- ------->ANAC58        <---------ANAC58             ====================RAV                ---------- -------LBD16          <---------ANAC58          --------->ANAC58                    --------->GLK1(2) ---->ARR14(2)        <------NtERF2              --------->ANAC58                    <---------ARR14(2) ->GT1  <-------TEIL ------>NtERF2              --------->MYB59                     --------->GLK1(1) -----ARR14(2)   <---------DEAR3(1)---------->DOF2  ----------->RAV1(1)             <---------GLK1(1)   tacggaagagttcattgatgcggtggcatgggagttaaaaagaagattgttaggcaacaactccaggttgtgagaagaaagaatggaaatctgaaaagca  20290200                --------->ICU4                <---------YAB1       <---------At4g35610       --------->At4g35610       <---------ZAT2                                                     <---------ANAC46     <-----------RAV1(2)                                                  <---------ANAC58 ---------GLK1(2)                                                         <---------ANAC58 ----->DOF2<---------ANAC58               --------->ALFIN1     --------->DAG2 ->ANAC58  <---------ANAC46         --------->YAB1            --------->DAG2                    ----- ->ANAC58  <---------ANAC58      <----------DOF2    ---------->DOF2       <---------AtLEC2   <------- >DOF2 --------->ZAT2--------->ATHB12     <---------REM1(1)  ---------->DOF2      ---------->DOF2   -   aagagtctcagcagcgtgatgtttgatttgatgctctttcataggtgtagaacttaaagcctgaaaaggggctattgcatgaataaaaggagatagacta  20290300                        --------->GLK1(1)                       --------->ARR14(2)        <---------AHL20(2)        --------->ATHB12<---------GLK1(1)       <---------AHL20(2)       --------->AHL20(1)                                 --------->TOE2(3)       <---------AHL20(1)                                ----------->GT1       --------->AHL20(2)                            --------->ATHB12 ----------->GT1       <---------GLK1(2)           <---------WOX13(1)         <-----------GT1 ---->ATHB12     <---------GLK1(1)               --------->ATHB12            <-----------GT1 ----------AG<---------TOE2(3)---------->DOF2   <---------YAB1           <----------DOF2 -------->MYB59<------ZmHOX2a(1)                ------>ZmHOX2a(1)     ------->TEIL    <----------DOF2   attgggtaatttattgaggaactcagatttcccaaagccgagactcactcctcattgattcgttaaaaattgaatctttttagcccttctttctctgtat  20290400                       --------->MYB52(1)                       ----------->RAV1(1)                     <---------ATHB12                     --------->MYB46(3)                    ------>MYB83                    ------>MYB46(1)                          <----------DOF2                -------->P                           --------->ARR11(3)                           <--          ---------->DOF2 ------->GAMYB              <---------ARR11(3)                           ---    <-------GAMYB  --------->WOX13(1)              --------->ICU4                             -------   <-----------RAV1(1)--------->YAB1            <---------YAB1     <----------DOF2    ---------->DOF2   aatctctgttgtaaaagctaccaatcaacagaaatggctacgttctcgttgtcattatcttctctttccctttgtattatttatctggcaaagaaatgaa  20290500                                                                                                  <--                                                                                           --------->YAB1                                                                                       <---------YAB1      <----------DOF2                                                              --------->ARR11(3) -------MYB46(3)                                                                 <---------YAB1   --- ------>ATHB12                                      <-----------RAV1(1)        <------ZmHOX2a(1)  --- -->ATHB12    <---------YAB1                     *TSS                   --------->MYB52(1)<---------YAB1   tggttgagctttagttataagtgttccctcttgctccctcaagttgctatggctatgtgggattagtaagaagacgacggaggatgattttgatgataac  20290600                            --------->ANAC58                            --------->ANAC46                                                       --                <---------ALFIN1                                                                   <-               ------>ZmHOX2a(1)                                                            <-------MYC3         ---------->ID1     --------->ANAC58                                                ------->MYC3     <---------MYB52(1)    --------->SPL7               --------->YAB1                     --------->ANAC46 -------At4g35610         ------>ZmHOX2a(1)<---------ANAC58                --------->At4g35610  <---- ------>ZAT2------>ZmHOX2a(1)------>NtERF2 <---------ANAC58    ------>ZmHOX2a(2)           --------->O2 ------>At4g35610  <---------DAG2      <----------DOF2------->TEIL         <---------At4g35610  -----   agctcccgtttgtcctcctcaccttctcctacgccattcttctttgcttcgccatgaatcatcgatcggaaactttcatcggaagaaaaatccacgtttc  20290700                                              <---------ARR14(2)                                        <---------SPL7                                      <-------TEIL                                                  <                                     --------->ARR14(2)                                             <                                     <---------MYB52(1)                                            <-                                   <---------MYB46(3)                                            ----                                   <---------DEAR3(2)                                           -----                                  <---------DEAR3(1)                                            <----                                 <---------MYB52(1)                                            <-----                               ------->GAMYB  --------->ARR14(2)                               <-----                               --------->DEAR3(1)                                             -------                              --------->MYB46(3)                                              =======                              --------->DEAR3(2)      <---------At4g35610                     <------       --------->YAB1         <------------AtMYB77    --------->At4g35610                     =======     <---------ARR11(1)   --------->LBD16 <---------LBD16                                     <------    <---------ARR14(1)    ------>NtERF2<---------ANAC58                                       -------    <---------CCA1(2)    --------->ANAC46 <-----------------AGL1                              <------ ------->ARR14(2)        --------->RAP2.6(2)--------->LBD16                                   <------ --------ARR14(2)       <---------LBD16<---------ANAC58                                ---------->DOF2 -----HSFB2a(2)    <-----------RAV1(1)--------->SPL7  <------NtERF2              --------->GLK1(2)--- ---->HSFB2a(2)  <----------DOF2<-----------HVH21--------->DAG2    --------->GLK1(2)   ==============   agaaccgtatcatgttcttctttgttgccgcaaccgtcggttcgtccggataaggcatcggagttgaagactctgtggaagaaattctacaaagtcgcgt  20290800                                                  ------>NtERF2                                                 --------->RAP2.3(3)                                                 --------->RAP2.3(2)         --------->LBD16                                                 --------->DEAR3(1)         --------->ATERF1(2)  --------->ATHB12                              --------->DEAR4(2)          --------->DEAR3(1) ----------DOF2                                 --------->RAP2.3(1)         --------->DREB2C(2) ---------DAG2                                  <------NtERF2              <---------LBD16 -----NtERF2                                    --------->ORA47(2)        --------->MYB52(1) ----->DEAR3(1)                                 --------->ATERF1(1)      <---------ALFIN1 ---->ATERF1(1)                                ------>NtERF2             --------->AtMYB61 --NtERF2                                      <---------ATERF1(1)       --------->DEAR3(1) ----ATERF1(1)                                 --------->ABI4(1)        --------->MYB46(3) ------HVH21                                  --------->RAP2.3(3)       <---------ABI4(2) -->O2                                        --------->RRTF1(3)        <---------MYB55(2)  <-------- ==========bZIP_DOF                           --------->DEAR3(1)       ------>NtERF2      <------NtERF2 ---O2  <<<<<<<<<MYB2       ------>MYB46(1)   --------->RAP2.3(2)      <---------ATERF1(1)--------->At4g35610 ==========bZIP_DOF         ------>MYB83      --------->ANAC46        --------->DEAR3(1) ------>NtERF2 ---TGA1a                   --------->ANAC46  <---------DEAR3(1)      <---------ALFIN1   <---------DEAR3(2) -->TGA1a                   --------->ANAC58 --------->ATERF1(1)      --------->ANAC46  <---------DEAR3(1) ---ANAC58                  --------->ANAC58 --------->DEAR4(2)    --------->ANAC58    --------->ATERF1(1) ---ANAC58          ---------->DOF2          --------->ERF1 <---------MYB52(1)  <----------DOF2 --->NtERF2      <------ZmHOX2a(1)           --------->RAP2.3(1)   --------->ANAC58  <---------ANAC58 ===bZIP_DOF  --------->LBD16               <---------ATERF1(1)    --------->ANAC46  <---------ANAC58   cgccttattggttttccgaggacaaagaccaagccaggcttcgtctcgccgccgtcttcgcccttactctcgccaccaccggcattagcgtcggcttcaa  20290900                <-----------GT1            --------->GLK1(1)         <---------MYB52(1)        --------->At5g28300       <---------ANAC58      <---------DEAR3(1)                                                                          <--     ------>NtERF2         --------->ANAC46                        <---------DAG2               -----  ------>ZmHOX2a(1)        --------->ANAC58                        <----------DOF2            ------>ZmHOX2a(2) --DOF2<---------ANAC58    --------->ANAC58                <---------CCA1(2)            <-------GAMYB   tttcctcggccgtgatttctacaattctctcgccagtacgaattcttcaactctctctctcatttctcacttttcaaaaacaacttgctctgttgatcct  20291000  Previous    Next  AGI:  At1g54340.1    Description:  ICDH; isocitrate dehydrogenase (NADP+). similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G14590.1); similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G65930.1); similar to NADP-isocitrate dehydrogenase [Citrus limon] (GB:AAD51361.1); similar to NADP specific isocitrate dehydrogenase [Daucus carota] (GB:BAA34112.1); similar to isocitrate dehydrogenase (NADP+) [Apium graveolens] (GB:CAA73139.1); contains InterPro domain Isocitrate dehydrogenase NADP-dependent, eukaryotic; (InterPro:IPR004790); contains I Range:  from: 20287147    to: 20290453    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g54350.1    Description:  ABC transporter family protein. similar to PXA1 (PEROXISOMAL ABC TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT4G39850.1); similar to hypothetical protein OsJ_000878 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11053.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64979.1); similar to hypothetical protein OsI_000889 [Oryza sativa (indica cultivar-group)] (GB:EAY73042.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain A Range:  from: 20290549    to: 20294068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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