Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------ZAT14               <---------ZAT18        <---------ZAT2        --------->ZAT2        <---------At4g35610       ------>ZmHOX2a(1)     ----------->RAV1(2)            <---------RVE1(1)  <---------HSFC1(2)               --------->ARR11(3)  <---------HSFB2a(1)              --------->AHL20(1)  <---------ZAT2        <---------ARR14(2)  --------->HSFC1(2)    --------->GLK1(2)  <---------At4g35610   --------->ARR14(2)                                <---------WRKY18(1)  --------->At4g35610   <---------ARR11(1)  ----------->RAV1(1)          ----------->HVH21  --------->HSFB2a(1)   ------->TEIL<---------CCA1(1)                    --------->WRKY12 ----ZAT2   <---------ANAC46       <---------AHL20(1)     <----------DOF2--------->WRKY45  ------->GAMYB --->ZAT2 <---------ANAC46         <---------ARR11(3)    <---------DAG2  --------->WRKY38(1) --->At4g35610 --------->ZAT18 ---------->DOF2        <---------ALFIN1 <----------DOF2    --------->MYB46(3)   tggaagctcctgctgtgtgaacttcgaatctgcaaaagatatttgccaacaaaatcacaccttttagccatagctttgaccatggttccctaaccatctt  20281200                                                                 --------->STY1(2)                                 ---------->DOF2                --------->ANAC58                         <---------At4g35610                    --------->ANAC58--------->GLK1(2)                   --------->GLK1(2)               <---------YAB1<---------STY1(2)     ------>ZmHOX2a(2)   tgtaacgacaattttgcaaagaatttgagctaatccaaagctgttaacaaattgttattgaaaaactagcaagtccagagagaatttgatccaattcgaa  20281300                         --------->YAB1                                                            <-                         <---------ICU4                                                           <--                        --------->ICU4                                                            <--                   --------->ANAC58                                                               ---                   --------->ANAC58                                                              <---                   --------->ANAC46                                                             <----               --------->YAB1                                 <---------YAB1                  -------            <---------DOF5.7(2)                             ----------->GT1                  ------>ZmHOX2a(1)           <---------WRKY12<---------YAB1                  <---------YAB1                    ========           <---------WRKY38(1)                             ----------->GT1                   ========           <---------WRKY45--------->ICU4                <---------At4g35610    <----------DOF2 <----   taagacagaagagtcaacgataagccataatgaataatcggaagaagatagcgaagggaagatgataaatacacttgggtcgctttgaattcttcctagc  20281400                            --------->LBD16                      ------>NtERF2                      --------->ATERF1(1)                     <---------ATERF1(1)                   --------->ZAT2                   ----------->RAV1(2)                   <---------At4g35610                   <---------ZAT2          <---------LBD16   ------>NtERF2          <-----------------AGL1       --------->HSFB2a(1)<---------LBD16       <---------HSFB2a(1)<------NtERF2      --------->GLK1(2)  ------>NtERF2      <-----------ARR10--------->ATERF1(1)      --------->ARR14(2)--------->PCF2    <---------ANAC46     <---------GLK1(2)<---------ATERF1(1)<------NtERF2 <------NtERF2     --------->At4g35610  ------>NtERF2 --------ANAC46   --------->LBD16      --------->ANAC46 ----NtERF2     <---------LBD16        --------->DEAR3(1) -------LBD16 <---------ARR14(2)       <---------DEAR3(1) ------>At4g35610<---------RAP2.6(2)  --------->ATERF1(1)                                           - ------RAP2.3(1)------>ZmHOX2a(2)    <---------ATERF1(1)           <---------------------WRI1      <- -----RAP2.3(2)<------ZmHOX2a(2)    <---------DEAR3(1)       <------NtERF2                  <-------- -->MYB52(1)--------->LBD16<---------ALFIN1                 --------->LBD16          --------->ANAC58 ======================HOX2a_HOX2a  ----------->HVH21      <---------ANAC46          --------->ANAC58 =====================HOX2a_HOX2a  --------->SPL7         <---------LBD16       --------->ANAC58   -- -----DEAR3(1)--------->ARR14(2) <---------SPL7    <---------GLK1(1)            --------->ANAC58  <--   ggcggaagaatctcccgatccggctgcccccgcgctggacgacgccgtattggaactcatggcggagaaaacgacgattactaagccaagccttgagggg  20281500               <------ZmHOX2a(1)               =================HOX2a_HOX2a             <---------TOE2(3)       <---------GLK1(2)     --------->LBD16                ----------->GT1    --------->HSFB2a(2)            --------->DAG2    <---------ANAC55(2)           --------->DAG2    --------->ANAC55(2)          ---------->DOF2    <---------HSFB2a(2)        <------ZmHOX2a(1)   <---------LBD16        ------>ZmHOX2a(2) -------->KAN4(2)        =============HOX2a_HOX2a                    ----------->GT1 --------KAN4(1)        --------->ARR14(2)                         ---------->DOF2 -ANAC46--------->GLK1(2)<------ZmHOX2a(2)                 <---------HSFB2a(2)            >>>>>>>>>TBF1 ------->KAN4(1)        <---------ARR14(2)                <---------LBD16              >>>>>>>>>TBF1 -------KAN4(2)==================HOX2a_HOX2a           <---------GLK1(1)           <------ZmHOX2a(1)   attattccggaatctaaggagaccgagatcggaggaaaaggtgaatcggacagagagaaatcgggaagagaaagtaaaatgaagaggaagaagaagaaca  20281600                        *TSS                      --------->DOF5.7(2)                   <------NtERF2                 <---------DEAR3(1)             <-------TEIL           <---------GLK1(2)           --------->ARR11(1)           --------->ARR14(2)            <---------YAB1 <---------O2           <---------ARR14(2)         <---------MYB52(1)<---------bZIP60(1)          <---------HSFB2a(1)        ----------->GT1    --------->O2     <---------ALFIN1<---------YAB1          <---------HSFC1(2)      --------->MYB52(1)    --------->bZIP60(1)   <-----------RAV1(1)          --------->HSFB2a(1)    --------->ARR14(2)<------------CBF   --------->PCF2 <----------DOF2          --------->HSFC1(2)     <---------ARR14(2)<---------ICU4 ---------->DOF2<---------ZAT18         ----------->ARR10   ---------->DOF2 <-----------GT1 --------->ICU4 <----------DOF2      <---   aggggaagacgaagattcgtcgtcgttaacagaaagaaccggtattattcccatattgacgtcaaaatgaaaggcccactttgtgggctttataatgggc  20281700                            --------->ARR11(3)                           --------->ATHB12                  ---------->DOF2                                   --------->AHL20(1)  <---------------AGL15     <---------ARR11(3)                      <---------AHL20(2)       <-------  ===================================================================================================  --------------->AGL15    <---------GLK1(2)--------->AHL20(2)      --------->AHL20(2) <-----------GT1 --------->ZAT6  <---------REM1(1)       --------->YAB1      <---------HSFB2a(2)  --------->HSFB2a(1) -------DOF2  <---------ANAC46      --------->AtLEC2         --------->HSFB2a(2)  <---------HSFB2a(1)   tttactctattttgttgagttgaagcccaaaatctcccatgcatcataaaatgtttttaagttctacaaattttttgatttggaacgtttttccttcaaa  20281800                                                                                                   <-                                                                                               <-----                                                                                               ------                             --------->YAB1                                                 <--------                          --------->YAB1              <---------AHL20(2)                   --------->ICU4                         <---------AHL20(2)           --------->AHL20(2)             <---------AHL20(2)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------AHL20(2)             --------->AHL20(2)        --------->At5g28300  <---------ICU4          --------->AHL20(2)             <---------AHL20(1)       ----------->GT1   --------->AHL20(2)      --------->AHL20(2)                 --------->AHL20(1)     <-------TEIL       <---------AHL20(2)       <---------AHL20(2)                 <---------AHL20(2)   <---------ARR14(2)   --------->AHL20(2)       --------->AHL20(1)      <---------AHL20(2)--------->AHL20(2) ----------AGL3--------->TOE2(3)                --------->AHL20(2)   <---------AHL20(2)  <---------ICU4 ==========MADS_MADS --------->AHL20(2) ----------->GT1         ----------->GT1  --------->AHL20(2)--   tattggatacagtaaaacctctataaattaataatgttcggactgcaaaattttattaatttagaggggttttaatttatcgataatttaatatttatta  20281900                ------>ZmHOX2a(1)               <---------MYB59               --------------->AGL15               <---------------AGL15              <-----------------AG              <-----------------AGL1              ----------------->AGL2                       <---------YAB1           --------->WOX13(1)              ----------------->AGL3                     --------->YAB1          --------->GLK1(2) --              ----------------->AGL1                   <-----------GT1   <----------DOF2           --              ----------------->AG                 <---------AHL20(2) <---------AHL20(1)          --- --------AHL20(2)        <-----------GT1         <---------RVE1(1)    --------->AHL20(1)   --------->ANAC46 ----AHL20(2) <-----------------AGL3             <---------CCA1(1)    --------->ARR11(3)   ---------- --->AHL20(2)---------->ID1 <----------DOF2     <---------GLK1(2)     <---------ARR11(3)   --------->ANAC58 -AHL20(2)  <-----------GT1 <---------DAG2      <---------ARR11(3)   --------->RVE1(1)     --------->ANAC58 ------->AHL20(2)     ----------->GT1           --------->ARR11(3)   --------->CCA1(1) --------->YAB1   attaatagaaaatttttcctaatttagtaacttttcaaaaatttgtataagattttttttcattatagaaaatatctttcaagaatcaattacaagtaaa  20282000     <---------YAB1    <---------ARR11(3)    --------->ARR11(3) --------->YAB1                                                                  <---------------AGL15 --------->AHL20(2)                                                              --------------->AGL15 ------->AHL20(2)                                                       <------ZmHOX2a(1) ------->AHL20(1)          ---------->DOF2                              --------->YAB1 ------>YAB1             --------->AtMYB61                             ----------->GT1  --------->ANAC58 ->GT1--------->YAB1  --------->ZAT6     ----------->GT1              <---------TOE2(3) --------->ANAC58   aaataatatcatatttagaaaataacaccaaaagtttttgatatagtaaaatactaaaactatatttcaaataaggataaatacaaatttaagcaaacaa  20282100  Previous    Next  AGI:  At1g54320.1    Description:  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein. similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT3G12740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64944.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) Range:  from: 20279201    to: 20281624    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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