Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->ARR11(3)                                  <-----------GT1                      <---------ARR11(3)           ------>MYB83      <---------GLK1(2)                   ----------->RAV1(1)         <-------           ------>MYB46(1) --------->ICU4                        --------->RAP2.6(2)      <---------CCA1(2)  <---------ZAT6         ---------->DOF2                      --------->ANAC58<---------ARR11(3)   -- ---->ZmHOX2a(1)      --------->AtLEC2                        --------->ANAC58--------->ARR11(3)<----   cctagtgtaaaccaaattagcgacatgtaaagattatttcagtctctatatcatacaatttgttaagccacaatatctaatatctatagctcgtatcacc  20205400                                                                                            ---------                                                                                           <---------ANAC55(1)                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                          <---------LBD16                               ----------->GT1                                            <----------                             ---------->DOF2                                            <---------ARR14(2)                         ---------->DOF2                                                --------->ARR14(2)  --------->At4g35610 <----------DOF2                                                 <---------ANAC58  ----------->RAV1(2) --------->TOE1(3)                                               <---------ANAC58  <---------At4g35610 --------->TOE2(3)                         <-------TEIL     <---------DAG2 ----GT1           <---------DOF5.7(2)                       <---------MYB46(3)  <----------DOF2 ------->MYB46(3)<---------MYB52(1)            <---------WRKY18(1)           <---------WRKY38(1) -----ALFIN1     --------->DOF5.7(2)---------->DOF2       <----------DOF2    <---------WRKY12 <------   actcaccagacccttggacgttaactttaaagaaagaaaaaagaaaacttgaccatttgactttggttcatacaacgagtcaacttttgggttccgggtc  20205500                                                                                    ----------->GT1                                                                                  --------->SPL1(2)                --------->WOX13(1)                                                --------->SPL7         ------------>CBF                                                        --------->SPL1(1)         --------->MYB46(3)                                                      <---------SPL1(1)        --------->ANAC46                                                        <---------SPL7        --------->ANAC58                        <---------ETT(1)               <---------ANAC58        --------->ANAC58    <---------ICU4      --------->ANAC46               <---------ANAC58       ------>MYB83 <---------TOE2(3)        --------->GLK1(2)                 <---------ANAC46      <---------ALFIN1 <---------ARR14(2)   <---------GLK1(2)                 <---------------AtSPL8     --------->MYB46(3)--------->ARR14(2) <---------TOE2(3)                --------->HSFC1(2)  <-----------GT1  --------->YAB1--------->ANAC58                          <---------HSFC1(2) >LBD16------>MYB46(1)<------ZmHOX2a(1)   <---------YAB1           --------->MYB46(3) -------------TaNAC69(2)   --------->ICU4 <---------TOE1(3)<---------GLK1(2) <------------------SPL14 -----HVH21   ------------>CBF   --------->ANAC58----------->RAV1(1)  <------ZmHOX2a(2)   --------->MYB52(1)   aaataaacccacccaattcaattaggatactaattaagcaagttaagattccgacacaagtgattctcaccgatcgatgtttcgtacggagaaaacggtt  20205600                 <---------DEAR3(2)                                   <---------TOE1(2)             --------->O2                                            ------>ZmHOX2a(1)             <---------TGA1a                                       ------>ZmHOX2a(2)             ==========================================bZIP_DOF  --------->ARR14(2)             --------->TGA1a                      ------------>CBF<------ZmHOX2a(2)             <---------O2                     <---------YAB1     <---------ARR14(2)                 -          <------ZmHOX2a(2)                 <----------DOF2      --------->ARR11(3)                 <         --------->ARR11(3)        <---------At4g35610           <---------ARR11(3)               ---         <---------ARR11(3)        --------->At4g35610          <------ZmHOX2a(1)    --------->STY1(1)        --------->GLK1(1)         --------->GLK1(2)          --------->HSFB2a(2)     <---------STY1(1)   ttctgatcagagatcacgtcgattcaaatcggtgagcatctgaaaactttgattcaatctcgtccaggatcctagggtttcaaaaccctaggtctctctc  20205700                                               <---------MYB46(3)                                             <-------GAMYB                                            <---------MYB46(3)                                            --------->MYB52(2)                                            --------->MYB55(2)                                            --------->MYB46(2)                                 =================================HOX2a_HOX2a                                 ------>ZmHOX2a(2)                               <---------ARR11(3)                                                 <--                               --------->ARR11(3) <---------MYB46(3)                       --------->At5g28300               --------->At4g35610  --------->ALFIN1                                      -----------     <---------TOE2(3)  --------->ANAC58    --------->MYB111(2)                         <---------At4g35610     ---------->ID1     --------->ANAC58    --------->MYB111(1)                         <---------ZAT2 -------->ARR14(2)      --------->ANAC46   <--------P                                   --------->At4g35610 ---------ARR14(2)    <-----------GT1  <---------ANAC46    <------ZmHOX2a(1)            --------->ZAT2 ------>LBD16  <---------At4g35610<-----------RAV1(1) --------->ATHB12     --------->GLK1(1)     ----   ccgatttgtggttttgcagctaaattacgctatgatctgtggggggtagttgttgttgataggattcaagttttcagatttcgaaatgagagctgtgaat  20205800                            <---------LBD16                       <<<<<<<<<CBP60g              <---------KAN4(1)               <----------DOF2              --------->KAN4(1)        xxxxxxxxxxxxxxxx>smallRNA(si3) -------AHL20(2)       <<<<<<<<<SARD1<---------YAB1                                               <-- >GT1        <---------KAN4(2)    --------->GLK1(1)          ------>ZmHOX2a(1)           <---------RVE1(1) ----->AHL20(2)--------->KAN4(2) --------->ARR14(2)     --------->YAB1     <----------DOF2   <-------   tttatgtatagctcgaataatcccaaatttcgagggattttcaatgggctttgcgctataatcctattcatcttcttctttgatcagagcgatatttaca  20205900                           <---------MYB52(1)                                   --------->ETT(2)                          <-------GAMYB                              --------------->AtSPL8               --------->GLK1(2)                                     --------------->AtSPL3               <---------ARR11(3)                                  <-----------GT1    <---------MYB52(1)   <---------ANAC46        <---------ATHB12 <---------ZAT14           <--------    <----------DOF2   <----------DOF2  --------->At5g28300        --------->ZAT14<---------DDF1 ----ZmHOX2a(1)--------->ARR11(3)     ----------->GT1<---------TOE2(2)          <---------ETT(2)    - ----GT1      <---------GLK1(2)      <---------ZAT6  <---------TOE1(2)   ------->TEIL    <---------ANAC46   ggaaccctttgttgaagaatctttctttcgttgattctagtggtaaattcaatcgtgggtttagccagtttactgtacctcgtcgacatttgagtgaagt  20206000                                       <---------------AtSPL3                                 --------->ALFIN1                               <---------ANAC58                               <---------ANAC46         <---------LBD16                               <---------ANAC58 --------->ARR14(2)               --------->HSFB2a(2)     <---------------AtSPL8                 <---------ARR14(2)    --------->MYB52(1)        --------->ATHB12  ------->TEIL                  --------->ARR14(2)<----    <---------ICU4        --------->At4g35610   <---------ARR14(2)         <---------TOE2(3)    ----- -ZAT14   <----------DOF2 --------->ZAT2       <---------CCA1(2)<---------ANAC55(2)    <---------YAB1 -------->ZAT6 <---------HSFB2a(2)  <---------YAB1  ------>ZmHOX2a(1)------->TEIL <---------At4g35610   tgacactaatggctcttctggtaatagcagcttgagtggtgatagtactgtatcctgctctgggttacatgaacatagaggttatgctgatcaatgcgaa  20206100                                                                                 <---------ARR14(2)                                                                                 --------->AGP1                                                                                 --------->ARR11(3)                                                                                 <---------AGP1                                                                                 <---------ARR11(3)                                                                   <---------ZAT14                                                                   --------->ZAT14<------ZmHOX2a(2)                                                                  ------>ZmHOX2a(1)    ----------->GT1                                                                  =======================HOX2a_HOX2a                                                                  ========================HOX2a_HOX2a                                                             <---------At4g35610 --------->ARR14(3)                                    <----------DOF2       <---------At5g28300    <---------ARR14(3)                                 <----------DOF2         <-----------GT1         --------->ARR14(2)          <---------ARR14(2)    <---------ANAC58      <----------DOF2    --------->ARR11(3)        <-          --------->ARR14(2)    <---------ANAC58   <---------ARR11(3)    <---------ARR11(3)       <-- -----ARR14(2)             <---------At4g35610     --------->ARR11(3)   <---------RVE1(1)        <--- ---->ARR14(2)           <-----------RAV1(2) --------->TOE2(3)  ----------->RAV1(2)------>ZmHOX2a(2)<   ttcttgaaatcgaatccaatttgttctccagatggcttctttgattacctcaagttcttttactgctcctgcagagattttaagatcttgggttatatac  20206200             <---------MYB46(3)           <---------ANAC58           <---------ANAC46      --------->ALFIN1  <---------ANAC58  <------MYB46(1)  <---------ANAC58  <---------ANAC46  <---------ANAC55(2)                          <---------At4g35610  <------MYB83                              <---------At4g35610  --------->ANAC55(2)                       --------->At4g35610  <---------ANAC55(1)                      <-----------RAV1(1)              <---------HSFC1(2) --------->MYB52(2)                <------MYB46(1)                          --------->HSFC1(2) --------->MYB111(1)               <---------ANAC46                        --------->GLK1(2)        - --------->MYB59                   ----------->GT1                 <-------GAMYB                  <-- --------->MYB111(2)             <---------ANAC46                 --------->MYB55(2)              <-- --------->MYB46(2)<----------DOF2 <------MYB83--------->At4g35610<---------MYB46(3)        <-------- --------MYB52(1) <---------ANAC58<---------MYB46(3)       <-----------RAV1(1)<----------DOF2  <----- ---------HVH21---------->ID1   <---------MYB52(1)      <----------DOF2<---------------------WRI1<--- ------ZAT6<---------ANAC58   <-----------RAV1(1)      <---------YAB1  <---------HSFB2a(2)  <-------- ---------MYB55(1)<---------ANAC58--------->MYB59<---------YAB1   --------->MYB52(2)   <----------DOF2   tgttaggtgtttggcttgttgctttgttttatctgttgggtaatactgctgctgattacttttgttgttcgttggagaagctttctaagcttttgaggtt  20206300  Previous    Next  AGI:  At1g54110.1    Description:  cation exchanger, putative (CAX10). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68312.1); contains domain PD119426 (PD119426) Range:  from: 20203086    to: 20205397    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g54115.1    Description:  cation exchanger, putative. similar to CAX9 (CATION EXCHANGER 9), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT3G14070.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75238.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45605.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) Range:  from: 20205786    to: 20207845    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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