Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------AHL20(2)                                     <---------AHL20(2)                         <--------ATHB1                                            --------->AHL20(2)                         <---------ICU4                                        --------->AHL20(2)                         --------->ATHB51                                  <---------AHL20(2)              --------->AHL20(1)      <---------ANAC58                 --------->YAB1         -------              <---------AHL20(1)      <---------ANAC58         <---------ICU4 <---------YAB1  -------              <---------AHL20(2) --------->AHL20(2)           <---------YAB1  <---------AHL20(2)    -              --------->AHL20(2) <---------AHL20(2)         --------->YAB1--------->YAB1     --------          --------->YAB1<---------ATHB51        <<<<<<<<<MYB98--------->ICU4 <---------AHL20(1)     -        <-----------GT1 <---------ATHB12       --------->TOE2(3)  <---------AHL20(2)     --------->AHL20(2) ----MYB46(3)--------->AHL20(2) --------->AHL20(2)         <---------YAB1<---------YAB1  <---------AHL20(2)   ttgtatagtttttcattatattttcaataattcatttattttgtgcctatgttaaaacattttcataattcatttataatattatttaaatttaaatgtt  20138400               <---------MYB46(3)                                                             <------ZmHOX2a(2) --------->ARR11(3)                                                                           ------- <---------ARR11(3)             --------->ANAC46                                             -------- ---->GT1     --------->WRKY38(1)                                                            <------- -->TOE2(3)  <---------MYB52(1) --------->ANAC58                                 --------->YAB1  ---- -------->CCA1(1)       ------>ZmHOX2a(1)                 <---------ANAC46    --------->TOE2(3)------ --->GT1    <-------GAMYB       --------->ANAC58    <---------AHL20(2)     --------->YAB1    <------- -------->RVE1(1)     ----------->RAV1(2)   ---------->DOF2           <---------MYB59        --------   aaatatctgttctgcgttggctactcctgaatgcaaacaacattgcaaaagtatttagttgtgtttttaatgcctaatcacattaatagatactagatct  20138500                                        --------->ICU4                                   <------MYB46(1)                                   <------MYB83                                   ----------->GT1                                   <---------ANAC55(2) -->CCA1(2)                       --------->MYB52(2) ->AGP1   <----------DOF2         --------->MYB46(2)                 --------->ZAT2 --ARR11(3)                       --------->MYB111(1)                <---------At4g35610 ----->MYB52(1)                   --------->MYB59                    <---------ZAT2             ----- >ZmHOX2a(2)                     <---------MYB55(1)                  --------->At4g35610        ----- --AGP1   <---------DAG2        <---------MYB52(1)               -------->P                  <------- ->ARR11(3)   <---------YAB1 <---------TOE2(3)          <---------YAB1                      <--------   aagggaaatagactttatgaaaaaatcaattgacgttaggtaaaaatttgtttagactatttttgtctaccagcagacaactctgactaaatttttaatc  20138600                                                                                             <-------                                                     <------ZmHOX2a(2)                  --------->At5g28300            --------->MYB52(1)                       --------->CCA1(2)                  --------->LBD16           ------->GAMYB                            <---------ARR11(3)                 <-------------          <------------MYB.PH3(2)                   --------->AGP1                     <---------ANAC46          <---------MYB111(1)                       --------->ARR11(3)                 --------------   <---------At5g28300--------->AHL20(2)  <-----------GT1  --------->At5g28300        ---------------  <-----------GT1  --------->YAB1    ========================HOX2a_HOX2a              --------------- ---->TOE2(3)    <---------YAB1      ------>ZmHOX2a(1)------>ZmHOX2a(2)            <---------SPL7 ---->YAB1<---------MYB111(2)        =======================HOX2a_HOX2a          <---------------AtSPL3 ----GT1  <---------MYB52(2)  <---------AHL20(2)    --------->ARR14(2)  ---------->DOF2----------->GT1 -AHL20(2)<---------MYB46(2)  --------->AHL20(2)    <---------AGP1 ------->TEIL <---------MYB52(1)   ttatttactgcaactaactattaataaactaataaaatcctaatttacaatatagatctacagtaaatgaatataaaagtctggtagtaccgtaaatagt  20138700       --------->MYB52(1)      --------->CCA1(2)   <---------YAB1          --------->MYB46(3)                   --------->RVE1(1) --------AtSPL8         --------->MYB46(3)            <-----------GT1                     ---------->DOF2 --AGL15          --------->YAB1                <---------AHL20(2)  <----------DOF2    --------->ANAC58 ->AGL15       --------->YAB1   <---------SPL7<----------DOF2  --------->ARR11(3)      --------->ANAC58 -->AGL3      <---------YAB1------->GAMYB --------->REM1(1)    <---------ARR11(3)<----------ID1 -->AGL2  ----------->GT1 -------->P    <----------DOF2 --------->ZAT6          *TSS ---------->DOF2   acatcaagataagggtataatagtaaacaaccatcgtactcgcttcatcttttattttactctaaaatctctttctgaagaaaacaacaaagcaaagcgt  20138800                                                                   --------->GLK1(2)                                                                  --------->ARR11(3)                           ------->GAMYB                          <---------GLK1(2)                     --------->CCA1(2)                          <---------TOE2(3)                    <---------ARR11(3)                      --------->At4g35610                    --------->ARR11(3)                      ------>NtERF2                ---------->DOF2                             <---------At4g35610                     <             --------->ANAC58   ---------->DOF2          <---------RAP2.3(1)                    -----             --------->ANAC58--------->LBD16   <-----------GT1  ----------->ARR10               <----         >>>>>>>>>TBF1  <-----------GT1 --------->WOX13(1) --------->DEAR3(1)       <xxxxxxxxxxxxxxxx   tgaagagagaagaagaagcaaagatataacccccaaaagtatcaattagtttccattttcgccgctaagattctgttttcgaacatttacaccctcaaga  20138900           --------->ALFIN1         --------->ALFIN1        <-------MYC3        ------->MYC3       --------->TGA1a       <---------O2       <---------TGA1a       --------->O2       ============================================MYC_MYB    <------NtERF2   ------>NtERF2   <---------RAP2.6(3)  --------->RRTF1(2)                                                                         >>>>>>>>  --------->DEAR3(1)                                                                   ==============  --------->ANAC46                                                                     ------>ZmHOX2a(2)  --------->RAP2.6(2)                                                                 ===============  --------->RRTF1(3)                                                                  --------->At4g35610  --------->ATERF1(2)                                                                 <------ZmHOX2a(2)  --------->DREB2C(2)                                                                <-----------ARR10  --------->RAP2.3(3)                                                                --------->GLK1(2)  --------->RAP2.3(2)                          ------>NtERF2                         <---------ARR11(3)  <---------ATERF1(2)                         --------->DEAR3(1)                     --------->ARR14(2) --------->ORA47(2)                        --------->DREB2C(2)                       <---------ARR14(2) --------->ERF1                            ------->GAMYB                             <---------AGP1 --------->RAP2.3(1)      --------->ARR14(2)------>NtERF2<---------ANAC46          --------->LBD16 ---------ATERF1(1)       <---------ARR14(2)--------->ABI4(1)                      <------NtERF2 ---->ARR14(2)           --------->RVE1(1) --------->DEAR3(1)                    <---------LBD16 ---- -----GLK1(2)   <------ZmHOX2a(1)         --------->DEAR3(2)        <---------ANAC58<---------ARR14(1) xxxxsmallRNA(si3)     --------->YAB1     --------->MYB46(3)        <---------ANAC58<---------CCA1(2)   atcgccgccatgtgtggaggagctataatatccgatttcattccaccgccgaggtctcgccgtgttactagcgagtttatttggccggatctgaagaaga  20139000                                                                            <---------TOE2(3)                                                                            <---------TOE2(2)                                                                      --------->GLK1(1)         ------>ZmHOX2a(2)                                       <---------ZAT2 >TBF1<------ZmHOX2a(1)                                          --------->At4g35610     --------->ATHB12 ============HOX2a_HOX2a                                         <---------At4g35610  --------->YAB1 ============HOX2a_HOX2a   --------->GLK1(2)          <----------CDC5 <---------GLK1(1) <---------YAB1 ----->GLK1(2) ---------->DOF2--------->TOE1(2)      <---------At4g35610    <---------TOE1(2)   atttgaaaggatcgaagaaaagctcgaagaatcgttcgaatttcttcgattttgacgctgagttcgaagctgatttccaaggtttcaaagatgattcgtc  20139100                                                                                              -------                                                                                            ---------                                                                                           --------->At4g35610                                                                                           ------>NtERF2                                                                                           --------->ZAT2                                                                                           <---------At4g35610                                                                                           <---------ZAT2                                                                                          --------->RAP2.3(2)                                                                                          <---------DEAR3(1)                                                                                          --------->DEAR3(1)                                                                                         --------->RAP2.3(1)                                                                                        ------>NtERF2                                                                                        --------->LBD16                                                                                        <---------ATERF1(1)                                                                                       --------->ANAC46                                                                                       --------->DEAR3(1)                                                                                      --------->ATERF1(1)                                                                                      <---------LBD16                                                                                     <---------ATERF1(1)                                                                                    <---------ARR14(2)                                                                                    --------->ARR14(2)                                                                                   --------->ATERF1(1)                                                                                  <---------ATERF1(1)                         <---------DEAR3(2)                                       ------>NtERF2 -----                        <---------DREB2C(2)                                       <-----------HVH21                      <-----------HVH21                                          --------->RAP2.3(3)                     <---------TGA1a                                             --------->DEAR3(1)                     --------->TGA1a                                             --------->RAP2.3(2)                     --------->O2                                               --------->DEAR4(2)  <             --------->ATHB12                                                   <------NtERF2 <------             <---------ICU4                                                     --------->RAP2.3(1) <            <---------YAB1                                                     --------->LBD16<------            --------->ICU4                                                     <---------ATERF1(1)  -          --------->YAB1<---------DEAR3(1)                                     ------>NtERF2<--------         --------->ICU4 <---------At1g77200    <-----------GT1                --------->ANAC46------>NtERF2 --------->ATHB12    <---------O2      --------->DEAR3(1)                    --------->MYB46(3)<-----   tatcgattgcgatgatgatttcgacgtcggtgatgttttcgccgatgtgaaaccattcgttttcacttcgactccaaaacccgccgtctccgccgctgcg  20139200      <---------AHL20(2)      --------->AHL20(2)     --------->ICU4 -->At4g35610 >ATERF1(1) ---->LBD16 ------MYB83 ---LBD16                                                                                       ----- ------MYB46(1)                                                                                 <---- ---At4g35610                                                                                <------- ---------->GT1                                       <---------TOE2(3)                  <---------DAG2 -DEAR3(1)           <----------DOF2      <---------MYB46(3)                             <----------DOF2 ----ANAC46     <---------WOX13(1)        ----------->GT1                               --------->TOE2(3)   gaaggtaaatatttagggattgactttagtttgagcgattgaattggttagaaattaagtttcgattctatttagctctgttcatagatacctttatctg  20139300  Previous    Next  AGI:  At1g53910.1    Description:  RAP2.12; DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor RELATED TO APETALA2 12 (RAP2-12) [Arabidopsis Thaliana] (GB:Q9SSA8;GB:O23113;GB:Q8L9V3); similar to RAP2.2, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G14230.3); similar to ethylene-responsive element binding protein ERF2 [Gossypium hirsutum] (GB:AAX07458.2); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 20138780    to: 20140638    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version