Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <-------TEIL                                                                                        <---------ZAT18                                                                                        --------->ZAT18                                                                                        <---------ZAT14                                                                                    --------------->AtSPL8                                                                                    <---------------AtSPL8           --------->ANAC58                                                      ---------->DOF2           --------->ANAC58                    ---------->DOF2                 --------->HSFB2a(2)   --------->WOX13(1)--------->YAB1         --------->ANAC58                   <---------HSFB2a(2) --->AHL20(2)        <---------ICU4         --------->ANAC58             <---------TOE1(3) >YAB1  --------->At4g35610     --------->TOE2(3)  <----------ID1        <---------TOE2(3)   aatagcaattagctcgaaattactcatgagaaaacatcaaactggttcgcaaagaaacaaaatacagcaaaatttagggttctaaaagggtacacttaca  20085000                                                                                     ------>ZmHOX2a(2)                                     ------>ZmHOX2a(2)                       --------->ARR14(2)                                    <------ZmHOX2a(2)                        <---------GLK1(2)                                   --------->ARR14(2)                        <---------ARR14(2)                            ---------->DOF2                   <------------------------ANAC81                           --------->WRKY18(1) --------->ARR11(3)        <---------LBD16   --------->CCA1(2)                          <-----------HVH21    <---------ARR11(3)       <-----------GT1   <---------ARR14(2)                 <---------ARR11(3)<---------ARR14(2)       <---------AHL20(2)   <---------YAB1   taagtcttgacgagagcgatatcatcttcgtcaagcggatcgtctacaatatctctcaccattttttttttttttttcggattttgatcggagatttgag  20085100                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                  <---------ANAC58                                                                                  <------MYB46(1)                                                                                  <------MYB83                                                                                  <---------At4g35610                                                                                  <---------ANAC58                                                                                  --------->At4g35610                                                                                 --------->MYB55(2)                                                                                 --------->MYB111(2)                                                                                 --------->MYB46(2)                                                                                 --------->MYB52(2)                                                                                 <---------MYB46(3)                                                                                 --------->MYB111(1)                                                                                 --------->MYB59                                                                                <---------MYB55(1)                                                                               <---------MYB52(1)                                                                              <-----------HVH21                                                                             --------->ANAC58                                        ===============================================bZIP_DOF                                        <----------DOF2                      <---------TGA1a                                      ------>MYB46(1)                        --------->TGA1a                          -------->P<---------MYB59                          --------->bZIP60(2)                          ------>MYB46(1)                                    <---------O2                          ------>MYB83------>MYB83        --------->ARR11(3) --------->O2                         ----------->RAV1(1)            <---------TOE1(3)    --------->ANAC58                        --------->AtMYB61            <---------YAB1  --------->MYB52(1)<---------ANAC46       >>>>>>>>>TBF1   *TSS         <---------MYB111(1) <---------TOE2(3)  <---------ALFIN1   atgtgagaagaagaaatcgaattacaccaacaagagtaccaactttgtccgagttattaaggtctagtaagtaagggccacgttaggtgccttgttggag  20085200                   ------->MYC4                   <-------MYC2                   <-------MYC4                   <-------MYC3                   ------->MYC3                   ------->MYC2                   ------->PIF5                   <-------PIF5                                            <---------DEAR3(2)                  <---------ANAC55(2)                                      <---------MYB46(3)                  <---------O2                                          <-----------HVH21                  <---------ANAC46                                      --------->ARR14(2)                  --------->O2                                          <---------ARR14(2)   --------                  --------->TGA1a                                     --------->LBD16      <---------LBD16                  <---------TGA1a          <------NtERF2            <---------LBD16---------->DOF2             <-----------GT1               ------>NtERF2--------->ARR14(2)--------->ETT(1)--------->ZAT2           --------->YAB1                 --------->DEAR3(1)        ------>ZmHOX2a(2)     <---------ZAT2         --------->AHL20(2)               <---------ATERF1(1)   ----------->HVH21<---------YAB1   aggccagagaaaataataccacgtgtgaattgggctatgaaacgcggcccattagcccaatatgcagtgatccgggtcgggtcattagagcgagccgggt  20085300                                --------->ANAC46                                --------->ANAC58                           <---------ANAC58                             <---------WRKY12                              <---------ANAC46                           <-----------HVH21  --------->ARR11(3)           <---------ANAC58                      --------->At4g35610     <-----------ARR10       <---------ANAC58                      <---------At4g35610     --------->ARR14(2)      <---------ANAC58                      <---------ZAT2          <---------ARR11(3)      <-----------RAV1(1)                     <---------MYB46(3)    --------->ANAC58     <---------DAG2             ------>NtERF2<---------ANAC46 --------->ANAC58    <---------ANAC58                   *TSS <---------MYB52(1) <--------P  --------->ANAC58               <---------ANAC58                   --- ->LBD16    --------->DEAR3(1)---------->DOF2 <---------ARR14(2)<----------DOF2<---------YAB1     ---   ctcgttatccatcgcctccctggttgctgcgtcaaagccagacacaagtatcttcgttgaaatttgctttttgtgtggcttatccttgtctgtcaaattc  20085400                                                                                       <-----------RAV1(1)                                                                                       <---------REM1(1)                                                                                     <------MYB46(1)                                                                                     <------MYB83                                                                                    --------->MYB55(2)                                                                                    <---------MYB46(3)                                                           --------->LBD16          --------->MYB46(2)                                                          <---------ANAC55(1)       --------->MYB111(1)                                                          <---------ANAC55(2)       --------->MYB111(2)                                                          --------->ANAC55(2)       <---------AtMYB61                                                          ----------->GT1           <---------DEAR3(1)                                                          <---------ANAC58         <---------MYB55(1)                                            ------>ZmHOX2a(1)           --------->ANAC46                                           --------->TOE2(3)            --------->ANAC58                                           --------->TOE1(3)            --------->ANAC58 ------>AtLEC2                  <------ZmHOX2a(1)         <---------ANAC58         <--------P --->ZmHOX2a(1)               <---------------AtSPL8      <---------ANAC46      ------>ZmHOX2a(1)   ctgcaaaaactctcgcctctctcagacagtaagaggaacatatttccttaatgtattgttccgtataatcttacaagacatcctggttggtgttgcagag  20085500                                                                                --------->DAG2                                                                           --------->HSFB2a(2)                                                                      <----------DOF2                                                                     <---------------AGL15                                                                     --------------->AGL15                                                                     <---------DAG2                                                                    ----------------->AG--------->LBD16                                                                    ----------------->AGL2 <---------RVE1(1)                                                                    <-----------------AGL1 <---------CCA1(1)                                                                    ----------------->AGL1--------->ARR11(3)                                                                    <-----------------AGL3--------->ARR14(2)                                                               --------------->AtSPL8  --------->HSFB2a(2)                                 ------>ZmHOX2a(1)             --------------->AtSPL3  <---------HSFB2a(2)                                 --------->LBD16               --------->MYB59 ---------->DOF2                        ---------->ID1       --------->ZAT2 <----------DOF2<---------HSFB2a(2) <-----                    <---------DAG2           --------->At4g35610    <-----------------AGL2<---------ARR11(3)                    <----------DOF2          <---------At4g35610    ----------------->AGL3<---------ARR14(2)   aagagtgtttcaaagtttcttcctttttcgttttcctggtctgaatgagctcccaatgccttctttaggtaccttttctggtaaagtttccagatattta  20085600                       <---------MYB46(3)                                                           <                       <------MYB46(1)                                            <----------DOF2  <-                       <------MYB83                                            <-----------GT1<------         <---------LBD16                     <---------ZAT14                  ---------->ID1  ------- ------GT1            --------->MYB59        --------->ZAT14  <----------DOF2<-----------------------   cctcttaattttctgggtttgtgtttggttactgtttagaattctacttcagtattgagactctctttcttctcaattttgtttcttttctattggattt  20085700                 -------->ATHB1                 --------->ATHB51                 <---------ICU4                 <--------HAHB4                 --------->ATHB12                                            --------->ARR14(2)  <---------YAB1 <---------AHL20(2)           <---------ANAC46               <---------ARR14(2) ---------ICU4   --------->AHL20(2)           <---------ANAC58               --------->ARR11(3) --------YAB1   <---------ATHB12              <---------ANAC55(2)            --------->GLK1(2)     -- ---GLK1(1)     --------->ICU4                <---------ANAC58   --------->ATHB12               ----- -->GLK1(1)     <---------ATHB51             <-----------------------TaNAC69(2)            <--------- -ANAC81      --------->WOX13(1) --------->YAB1        ---------->DOF2       <---------ARR11(3) <----   catcattcttgagtatcaattatttgcatttgcaatcttggtctaaatgcgtataagaaaagactagtgattcgcacagtatctagagaatgtttactag  20085800                                                ------>MYB46(1)                                                -------->P     --------->At4g35610                        ------>MYB83                      --------->ATERF1(1)     <---------At4g35610        <---------ARR11(3)                               ------>NtERF2 ------->MYB52(1)               --------->ARR14(2)                              <---------RAP2.3(3) ---->STY1(2)                   --------->ARR11(3)--------->TOE1(3)             <---------RAP2.3(2)-- --GT1                  <---------ICU4       --------->MYB46(3)         >>>>>>>>>>>>>>>>>LFY   <----- -----STY1(2)<----------DOF2    <---------ARR14(2)--------->TOE2(3)    ---------->ID1         <------   ctaatggagatgactctttggtttaatctttgcagatattgctactatccaaccttcatttcaagctcatcttgttccattgggggctcagagtattatc  20085900  Previous    Next  AGI:  At1g53790.1    Description:  F-box family protein. Identical to F-box protein At1g53790 [Arabidopsis Thaliana] (GB:Q0WQM8;GB:Q9SSB3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G31470.1); similar to hypothetical protein OsJ_019595 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36112.1); similar to Os06g0192600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057037.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 20082749    to: 20085123    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g53800.1    Description:  endonuclease. similar to endonuclease [Arabidopsis thaliana] (TAIR:AT1G53250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45538.1); contains InterPro domain Intron-encoded nuclease 2; (InterPro:IPR003611) Range:  from: 20085398    to: 20088168    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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