Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->YAB1                                                                              <---------------AGL15                                                                              --------------->AGL15                    ---------->DOF2                 --------->AHL20(2)    <-------TEIL  ----------->GT1               <-------TEIL                         --------->AHL20(1)  <---------ARR14(2)              --------->CCA1(2)        <-----------GT1                  --------->ARR14(2)             --------->ARR14(2)      --------->KAN4(2)          --------->ALFIN1 <---------------AGL15 --->RAV1(1) <---------ARR14(2)    ------->TEIL     <---------AHL20(1)  <---------GLK1(2)    -------- >ANAC46--------->MYB52(1)      <---------YAB1      <---------AHL20(2) --------->At4g35610--------->ICU4   tatggagagataacagatacaacaaagcatgactatgaatatttccacttggaataaattcaaacagtgaggcagattcactcatataagtagtaattag  20071700                                                         <------ZmHOX2a(1)                                                        ----------->GT1                                                       <XXXXXXXXXXXXXXXXXXXXMIR870                                                      <------ZmHOX2a(1)                                                   <---------LBD16                  --------->ANAC58                                                   <-----------RAV1(2)              --------->ANAC58                                           <---------ARR14(2)                     --------->CCA1(2)                                           --------->ARR11(3)                ---------->DOF2 <------- ->ICU4          ----------->GT1          <---------CCA1(2)   --------->TOE2(3)  <----------ID1   caaaaaaaactgaaccaagtagaaaaatcaagctcatcaagaacatatctagctcaggaggaaacatcaaattggtttgcaaagagacgaaaccctcaca  20071800                            --------->ARR14(2)                            <---------ARR14(2)                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                       --------->CCA1(2)                      <---------AGP1                                                             <---                      <---------ARR11(3)                                                         <---                      --------->ARR14(2)                                               --------->DAG2                      <---------ARR14(2)                                            <---------HSFB2a(2)                     <---------GLK1(1)      --------->At4g35610                     <---------------AGL15                    ----------->ARR10     --------->YAB1                            --------------->AGL15                 <---------ZAT6         ------->TEIL                  --------->YAB1--------->HSFB2a(2)           --------->ARR11(3)      --------->At4g35610                --------->AHL20(2)--------->DAG2 --ALFIN1  --------->GLK1(2)<---------GLK1(2)   ----------->GT1      <---------ATHB12 ---------->DOF2   ttcgagtaactaaaatctagtgtagatccgaattctccgatgaatcagaagagtaaaaatcgaaaaccccaataaaacttagggttctaaaaggggaagg  20071900                                                                                                   <-                                                                                                  <--                                                                                              <------NtERF2                                                                                              -------                                                                                              <------                                                                                             <-------                                               <---------ARR14(2)                            ------>NtERF2                                               <---------GLK1(2)                            ---------                                               --------->ARR14(2)                           <--------                                              <------ZmHOX2a(1)                           <----------                                          <---------TOE1(1)                              <-----------RAV1(1)                                        <------ZmHOX2a(1)                            <---------YAB1-- ------ANAC58          <---------ARR11(3) <---------TOE2(1)                  <---------ARR11(3)   --- ------ANAC58 <------ZmHOX2a(1)        <----------ID1    <---------CCA1(2)   --------->ARR11(3) -----   cttacataagtcttgaggagagcgatatcatcttcatcaagaggacgaggattcttctcgtctctaatctcatcttcaatatctctcaccattgtcgccg  20072000      --------->ARR14(2)      <---------ARR14(2)  ----------------->AGL1  ----------------->AG --------GLK1(1) -------ARR14(2) -->ATERF1(1) ---LBD16 --RAP2.3(1) >ETT(2)                                                                                        <---- -DEAR3(1)                ---------->DOF2                                               <-----------GT1 -HVH21       --------->CCA1(2)                             <---------ANAC58        <----------DOF2 ------->GLK1(1)         ------>ZmHOX2a(1)                  <---------ANAC58     --------->ARR11(3) ------>ARR14(2)     --------->GLK1(2)                      <---------ANAC46     <---------ARR11(3) ---->LBD16  <---------ARR14(2)                 <---------YAB1          <------ZmHOX2a(1)  <---------   gatttccaaatcggagatttgagattcctaaagttgagagaaaatggattacgatttatgtgtcttgctgaagaggaaaacaagttcttttttcttttct  20072100                                                                               --------->PCF2                                                                             ------>NtERF2                                                                             <---------At4g35610                                                                         --------->ALFIN1                                                                        ------->MYC3                                                                        <-------PIF4 <-------PIF5                                                                        ------->MYC4 ------->MYC3                                                <---------ANAC58        ------->MYC2 <-------MYC3                                                <---------bZIP60(2)     <-------MYC2 <-------MYC2                                                <---------O2            <-------MYC3 ------->MYC4                                                --------->bZIP60(1)     ------->PIF4 <-------MYC4                                                <---------ANAC55(1)     <-------MYC4 ------->MYC2                                                --------->TGA1a         ------->PIF5--------->O2                                                <---------ANAC46        <-------PIF5--------->TGA1a                                                <---------ANAC58       <---------O2 =================                                                ----------->GT1        --------->O2 <---------ANAC46                                                <---------TGA2(1)      <---------TGA1a                                                <---------TGA1a        --------->TGA1a----------->GT1                                                <---------bZIP60(1)    =======================bZIP_bZIP                                                --------->O2           <---------ANAC55(2)             =============================================bZIP_DOF     ==============================          ----------->GT1                       --------->ANAC55(2)    --------->ANAC55(2)   <---------------AGL15                        <---------ANAC55(2)    --------->ANAC46   --------------->AGL15                     ----------->TGA1        <------------OsbHLH66   --------->HSFC1(1)                        ----------->HVH21       <---------ALFIN1------->PIF5   <---------HSFC1(1)                   <---------O2               <---------ALFIN1<---------TOE1(2)   <---------HSFB2a(2)                  <---------ANAC46  --------->At4g35610--------->At4g35610   --------->HSFB2a(2)            *TSS  --------->O2 --------->CCA1(2)------------>OsbHLH66  <-----------------AGL1      <---------ANAC58 <-----------------------TaNAC69(2) <---------ALFIN1 ------DOF2  ---------->DOF2  <---------ANAC58 ----------->STF1    --------->AtMYB61<---------O2  <-- -DOF2---------->DOF2         <---------ANAC46<---------TGA2(2)   --------->MYB46(3)<---------TGA1a   tttttctcgaaagggtaaagaagttctaatttgcgtttagtctcgtggtgacgtgatataagctaagaaccacacgtgccgctcccacgtgtaaaatggg  20072200                                                          ------->MYC3                                                          <-------MYC2                                                          ------->MYC4                                                          <-------MYC4                                                          ------->PIF5                                                          ------->MYC2                                                          <-------PIF5                                                          <-------MYC3                                                          ------->PIF4                                                          <-------PIF4                                                         ============================================                                                         --------->TGA1a                            <                                                         --------->O2                             ---                                                         <---------O2                             ---                                                         <---------PIF3(3)                      -----                                                         <---------TGA1a                        -----                           <-----------RAV1(1)           --------->PIF3(3)                     ------                         <---------ANAC46               <---------TOE1(2)                     -------                --------->ARR14(2)                     <---------ALFIN1                       -------          ------>NtERF2  <---------ANAC58  <------ZmHOX2a(2)                              --------->ANAC46 ========bZIP_DOF        <---------ANAC58--------->At4g35610                              --------->ANAC58 ========bZIP_DOF  <-----------GT1       <---------At4g35610     --------->WRKY18(1)      --------->RAP2.6(2) --------DOF2  <---------CCA1(2)     <-----------HVH21 <------------OsbHLH66              --------->ANAC58   ctttttaagcgaggcccatattttctgtcttgttggagaggtcagatcaaaataatcccacgtgccagtcaaactaggttgagcgaaaaaaaccgcaacc  20072300     --------->AtMYB61     ------->GAMYB    --------->MYB46(3)   -------->P  --------->WOX13(1) ===MYC_MYB ---------ATHB12 --->MYB83 --->MYB46(1)                                               ========================================= -->GAMYB                     <-----------GT1       <<<<<<<<<TBF1 ---->AtMYB61      --------->ARR14(2)            <<<<<<<<<TBF1                 --------->ANAC58 --->MYB46(3)      <---------ARR14(2)    <-----------GT1    <---------------AGL15            <------- -->ANAC58      <---------MYB59      <---------AHL20(2)<<<<<<<<<TBF1           --------->ANAC58 -->ANAC58    ------->TEIL<---------MYB46(3)<----------DOF2 --------------->AGL15            --------   aaatcaaccaaaactgaaccgaatttgtttgttaaccattttttttctttcttcttcttcttctaaattcggataactaaaacgaaattgaaacatatac  20072400                                                                         <---------AHL20(2)                                                                         --------->AHL20(2)                                                                        --------->AHL20(2)                                                                        <---------AHL20(2)                                                             --------->YAB1        --------->ANAC58                                     --------->ATHB12        --------->ANAC58                                     <---------ICU4        --------->ANAC46                                     <--------HAHB4      --------->MYB52(1)                                     --------->ATHB51   --------->AtMYB61                                         -------->ATHB1 ------>MYB83                                               <---------ATHB12 -------->P                --------->MYB52(1)               <---------ATHB51 ------>MYB46(1)        --------->TOE2(3)                   --------->ICU4    --------->AHL20(2) =========================================================================MADS_MADS --ARR14(2)      <---------AtLEC2         ----------->GT1 <---------------AGL15 ->ARR14(2) --------->ARR14(2)       <---------YAB1       --------------->AGL15<-----------GT1    ---   ccctaccaaaacggaatttgcatcaaacttaactgaattacaaatggttttatatagtttcaattattagataaaaaaatttaactaaaccgaaactaat  20072500                             ----------->GT1                            ------->MYC3                            <-------MYC3                            <-------MYC2                            ------->MYC2                           --------->TGA1a                         <---------ALFIN1                    ------->GAMYB            <---------ANAC58------->MYC4            <---------ANAC58<-------MYC4         --------->GLK1(1) <---------TGA1a         <---------WOX13(1)<---------O2        <---------ARR14(2) --------->O2    <---------MYB52(1)        --------->ARR14(2) <---------ANAC55(2)      ------>NtERF2                                  <-      --------->LBD16  <---------ALFIN1  ----------->GT1                                           <-    <---------LBD16 =================MYC_MYB      <---------RAP2.6(2)                           <---- ====================================bZIP_DOF    --------->RAP2.6(3)                            ----- ---------->DOF2--------->MYB46(3)     --------->At4g35610--------->ARR14(2)                   <----- ------>TOE2(3) --------->REM1(1)      <---------At4g35610<---------ARR14(2)              <----------DOF2   ccataaaccggattgcctacaaccctcacacgtgtaaattgagctgttaatttcggcccatattcgagtttttttttgtttttgtatcatttcttttttt  20072600  Previous    Next  AGI:  At1g53750.1    Description:  RPT1A (regulatory particle triple-A 1A); ATPase. Identical to 26S protease regulatory subunit 7 (RPT1A) [Arabidopsis Thaliana] (GB:Q9SSB5;GB:Q9SEI6); similar to 26S proteasome AAA-ATPase subunit, putative [Arabidopsis thaliana] (TAIR:AT1G53780.1); similar to 26S proteasome subunit 7-like protein [Lactuca sativa] (GB:AAP72958.1); similar to 26S proteasome subunit 7-like protein [Lactuca sativa] (GB:AAP72957.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45534.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain Range:  from: 20069382    to: 20072134    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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