Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------ZAT14         <-----------GT1      --------->ARR11(3)      <---------AHL20(1)   --------->YAB1          --------->YAB1   --------->AHL20(2)     <---------ATHB12            <---------At4g35610 -->ANAC58   --------->ZAT14                          --------->At4g35610 -->ANAC58   --------->ZAT18                         --------->MYB52(2) -->ANAC46 --------------->AtSPL8                <---------MYB46(3)<----------DOF2   ctctataatatatactgtactgtttctaatcatatgcaaaaatgtttttggaggttagctgttttctgactttgtatttgcaatttctactgatatatat  20004500                                       <---------YAB1                                      --------->AHL20(2)                                      <---------AHL20(2)     <---------AHL20(2)                <-----                                      <---------AHL20(1)     --------->AHL20(1)                ------                                     --------->YAB1          --------->AHL20(2)                <-----                                 <---------AHL20(2)         <---------AHL20(2)                 <-----                                 <---------YAB1             --------->AHL20(2)                 <-----                         <----------DOF2              ----------->GT1              <---------YAB1                  ------>ZmHOX2a(1) <---------YAB1  ----------->GT1     ---------->TaMYB80     <-----   acactaatacaagttgtttcctatagactttgatttttattataatttaggggaatgtgtaaataatttaggggaatatgtcaatatgctagttgagacg  20004600                                                                                               <-----        <-----------GT1                                                                 <---------MYB52(1)        <---------WRKY18(1)                                                            <-------GAMYB ----TGA1a          --------->AHL20(2)                            <---------TOE2(3)    --------->At5g28300 --->TGA1a   ------>MYB46(1)                                   <---------WOX13(1)     ----------->GT1 ----ANAC46  ------>MYB83<-------TEIL                         <------------CBF        --------------- ----O2--------->WRKY38(1)       <---------ANAC58            --------->ATHB12       <---------At5g28300 ----ANAC58--------->AtMYB61     <---------ANAC46           <---------YAB1        ----------->HVH21 ----ANAC58<---------MYB59       <---------ANAC58    <----------DOF2              --------->WRKY12   tgcaatgtattgaccaaacccattatatacatttgtcgtgccaagttgcctcagtctttagtttgattgatgtttaaaaactatttgaccgttaatagga  20004700                                                                  <---------YAB1                                                               <---------YAB1                                                             -------->HAHB4               --------->ARR11(3)                            --------->YAB1          --------->ANAC46                                  <---------YAB1                --------->KAN4(2)        --------->ANAC58                                  <---------ICU4                 --------->KAN4(1)        --------->ANAC58                                 <---------YAB1                  <---------KAN4(1)       --------->ZAT18                           <---------AHL20(2) <------------CBF    <------ZmHOX2a(2)   <---------------AtSPL8                  ----------->GT1<--------HAHB4          <------------CBF -ZmHOX2a(1)   <---------ARR11(3)       ------->TEIL     --------->ICU4       ----------------->AGL1- >AGL15<---------ZAT18             --------->CCA1(2)   --------->YAB1        <-----------------AGL1<-   tggaaatggtacacaaaaatctcatgagtcatggatgatatgaaactgtatataatctcataattatagttattgtttatcccaaattggatcattctat  20004800               --------->AHL20(1)              <---------AHL20(2)                        <---------AHL20(2)              --------->YAB1                          <---------YAB1                   --------->LBD16              --------->AHL20(2)                    <---------ICU4                    --------->ANAC46      ----------->GT1                               --------->YAB1                   <---------LBD16   <-----------RAV1(1)     <-----------GT1          <--------HAHB4                 -------->P   <---------TGA1a        --------->AHL20(2)        -------->ATHB1            --------->AHL20(2)   <---------REM1(1) ------------>CBF               --------->ATHB51    --------->TOE2(3) <----------DOF2   <---------O2<---------AHL20(2)       ----------->TBP--------->AHL20(2)     <---------AHL20(2)   <---------bZIP60(2) --------->WOX13(1)     --------->YAB1    <----------DOF2<---------ICU4   <---- ---------->HVH21<------------CBF --------->ZAT18  <---------YAB1       --------->TOE1(3) <---------DAG2 --------ANAC46<---------AHL20(1) <---------ZAT18  --------->ICU4 ----------->TBP <-----------GT1   ggctgatgtggcaaaattatattgtcaattaacttgtgaactacataaacagaattattatataagctttaaaaccctaaatatttacccggcttttttt  20004900                                                           <---------AHL20(2)                         <---------WRKY38(1)              --------->AHL20(2)          ------>ZmHOX2a(1)  --------->YAB1            <------ZmHOX2a(1) -------GT1             ------------>CBF             <---------TOE2(3)                 ----------->GT1   tcttctcgcatcctttgaaatcgctagtcaatggtgatgagaccgatttcgaacaaaggattaatttacagacacaatatttgtctgagatgtaattcta  20005000                                                     --------->ATERF1(1)                                                <---------HSFB2a(2)                                                --------->HSFB2a(2)                                            <----------DOF2                                      --------->ANAC58                                      --------->ANAC55(2)                                      --------->ANAC46                                      <---------ANAC55(2)                               --------->ICU4                 <-------PIF5         --------->ANAC58                 <---------At4g35610                 ------->PIF5 --------->LBD16  <---------LBD16  ------->GAMYB<----------DOF2             --------->MYB46(3)       --------->ANAC55(1) ------>NtERF2--------->At4g35610      -----   cgcttgctgtctctaaccacgagcccattacccagaaaacacgaaactttctggagacgacgacaacgagcacagctatctttcaatgtaattctcagat  20005100                               <---------At4g35610                    <---------ARR14(2)                    --------->ARR14(2)                    --------->GLK1(2)                   <---------GLK1(1)                                                          <------                   <---------GLK1(2)                                                     <---------GLK1(1)      --------->ANAC58         --------->At4g35610                                     --------->ATHB12      --------->ANAC46      ---------->DOF2           <-----------HVH21               <---------YAB1      --------->ANAC58     --------->ANAC46        <---------At4g35610                --------->ICU4 ---->GLK1(1)--------->CCA1(2)--------->GLK1(2)    --------->At4g35610    <---------ANAC46    -------   ttcgaagcacgcgagaaatgggaatctccaagaagctgaagctattttcagacagatgtcaaatagaagtattgtctcttggattgcgatgatttctgct  20005200                                                                                            ---------                                                                                            ---------                                                                                           --------->ICU4                                                                                           <---------YAB1                                                                                     <---------ANAC46                                                                                <---------ICU4                                                                                --------->ATHB12                     ---------->DOF2                                            --------->YAB1         --------->YAB1                                      --------->REM1(1) <---------YAB1         ----------->GT1                                   <-----------GT1     --------->ICU4  ------ ---At4g35610 --------->At4g35610               <---------ANAC58     --------->YAB1  <---------RAP2.6(2) -->At4g35610 <---------At4g35610               <---------ANAC58    <---------YAB1  --------->RAP2.6(3)   tacgcagagaatggtaagatgagtaaagcatggcaagtgttcgatgaaatgcctgtgagagttacaacttcttataatgcgatgattacggctatgatta  20005300                                                                            --------->YAB1                                                                            <---------ICU4                                                                            --------->ATHB12                                                                           <---------YAB1                                                                           --------->ICU4                                              --------->LBD16        ----------->HVH21           ---- >ATHB12                                    <---------LBD16    <---------ANAC58                ------ >YAB1                   <---------YAB1    --------->MYB52(1)  <---------ANAC58                <----- --->AHL20(2)    ---------->DOF2        <----------TaMYB80  <---------ARR14(2)  --------->MYB52(1)   aaaacaagtgtgatttgggtaaagcttatgaattgttttgtgatataccggagaagaatgcggtttcttatgcgacgatgattaccggttttgttcgggc  20005400  Previous    Next  AGI:  At1g53600.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to hypothetical protein S250_18C08.29 [Sorghum bicolor] (GB:AAL73539.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20004931    to: 20009463    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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