Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ------>ZmHOX2a(2)                                                                                --------->GLK1(1)                                                                                <---------GLK1(1)                                                                                <------ZmHOX2a(2)                                                                               --------->AGP1                                                                               <---------ARR11(3)                                                                               <---------AGP1                                                                               <---------ARR14(3)                                                                               --------->ARR14(3)                                                                               --------->ARR11(3)                                                                               --------->ARR14(2)   -                                                                               <---------ARR14(2)  <-                                                                          <------ZmHOX2a(2)       <--                                                                         --------->ARR11(3)       ---                                                                         <---------ARR14(2)       <--                                                              ---------->DOF2 <---------CCA1(2)   ---                                                     <------ZmHOX2a(2)   --------->AGP1           ---                                                    --------->ARR14(2)   --------->ARR14(2)       <--           --------->ARR14(2)                       <---------ARR14(2)  --------->At4g35610  --------          <---------GLK1(1)        ----------->GT1 <---------ARR14(1)   <---------At4g35610<---------At4g35610     --------->TOE2(3)      --------->TOE2(3)<---------At4g35610    <-----------HVH21      --------->At4g35610   catccatccttgaaatctgcaaaaaaaaaacatcaaatggaaaattcagaagcggatcatatgaaaaagaagtcagatccagatctccaattcagcaaca  19973000             --------->O2          ----------->HVH21         <-----------HVH21        --------->bZIP60(2)      <---------ICU4 ----->ZmHOX2a(2) -----ZmHOX2a(2)                                            <-------TEIL -------ARR11(3)                                            --------->SPL7 ------>AGP1 --------->TGA1a                             --------->ANAC58 -------ARR14(2)                                         --------->ANAC58 ------>ARR11(3)     --------->YAB1                      --------->ANAC55(2) ------>ARR14(2)    <------ZmHOX2a(2)            <-----------HVH21   <-----------GT1              --- -------AGP1 <---------O2                    ------->TEIL<---------ANAC55(2)       <---------HSFB2a(2) --->RAV1(1) <---------TGA1a    ----------->RAV1(1)     --------------->AtSPL3     --------->HSFB2a(2)   gatcttaaacatgtcacatgggatcataaacagacaacatagagatgtatttgtcactcacgtacaacatttcacaaaattagttttagaaatagaaaca  19973100                      --------->At1g77200                      <---------ETT(1)                     --------->DEAR3(2)                    --------->SPL7                    ------->TEIL                    --------->MYB52(1)                  <---------SPL7                 <---------ANAC55(2)                                ------>ZmHOX2a(2)                 --------->ANAC58                                  <------ZmHOX2a(2)                 --------->ANAC58                                 --------->ARR11(3)                 --------->ANAC55(2)         <---------At4g35610  <---------ARR11(3)                 --------->ANAC46   <--------P                    --------->AGP1                   --                --------------->AtSPL3       --------->At4g35610 <---------GLK1(1)   --------->CCA1(2)                <---------------AtSPL3  <---------ZAT6           --------->GLK1(1)<---------YAB1   -- ------->DOF2  <-----------GT1--------->GLK1(2)             ---------->DOF2     ---------->DOF2  ----   gaaagagagaaacaatttcacgtaccgacacaattctggttagagtcagataacccaagagagaaagagatcttaagagagataaagatagaaacttcac  19973200                                                                                          --------->HSFC1(2)                                                                                          <---------ZAT2                                                                                          <---------At4g35610                                                                                          <---------HSFB2a(1)                                                                                          --------->HSFB2a(1)                                                                                          <---------HSFC1(2)                                                                                         <-----------ARR10                                                                                      --------->ANAC46                                                                                     <---------LBD16                                                                                   --------->ETT(2)                                                                                   <---------WRKY38(1)                                                                                   <---------WRKY12                                                                          --------->GLK1(2)                                ----------->GT1                >>>>>>>>>TBF1       <---------ETT(2) ---->MYB83                   ---------->DOF2               >>>>>>>>>TBF1 ---------->TaMYB80 ---->MYB46(1)             <---------YAB1               <------ZmHOX2a(1) --------->ARR14(2) ----->MYB46(3)     ----------->GT1               <------ZmHOX2a(1)       <---------ARR14(2)       --   caactatagagagagagagagagagaaatatgaaaagaaaaaacagtagagaggaagaggaagaagaagaagagggaatctacggtctacggagcttctc  19973300                                                                                     <---------TOE2(3)                                            ==================================HOX2a_HOX2a                                    <---------ARR14(2)                               <---------ANAC46                                    --------->ARR14(2)                               --------->ANAC55(2)                                --------->LBD16                                      <---------ANAC55(2)                               <---------ANAC55(2)                                  <---------LBD16                               <---------ANAC46                                <---------ARR11(3)                              <---------LBD16                           ----------------------->TaNAC69(2)                            --------->ARR14(2) <------ZmHOX2a(1)       ------>ZmHOX2a(2) <---------GLK1(1)                            <---------ARR14(2) ===============================HOX2a_HOX2a--------->GLK1(1)       ------->TEIL        <-------GAMYB--------->TOE1(2)     <---------At5g28300  <-----------GT1 ------->ANAC46        ------------>AtMYB77 <------ZmHOX2a(1)<-----------GT1   --------->ARR11(3)   tcagcaatgtgcctcttatattctgagacagttacggagaaccgtaggaggaaattgactaatttacccttgatcgtcttagatattacggatttctcgt  19973400                                      <---------ANAC58                                 ==============          ----------->RAV1(1)         <---------ANAC58                                 --------------         ----------->HVH21         <----------DOF2                                     <-------------         <---------ETT(1)       <------------------------ANAC81                       <--------------        --------->SPL7     <----------DOF2                                    --------->At4g35610      <---------SPL7      <------------------------ANAC81                --------->ATHB12      <-----     <---------ANAC58    *TSS  ---------->ID1           --------->TOE2(3)<---------AHL20(2)    ======     <---------ANAC58  <---------CCA1(2)          <-----------GT1       --------->AHL20(2)   --------   gagtctagcgtccgacattaaactcatgtctttttctctttcttgttttgtttttcaacataaatgtgagtctatttattagctctctactaaattagga  19973500                                          <---------ANAC55(2)             <---------YAB1               <---------TOE2(3)      <------ZmHOX2a(2)                 <---------AHL20(2)           --------->AHL20(2)      ------------>CBF                  --------->AHL20(2)           <---------AHL20(2)     --------->AGP1                 --------->AHL20(2)               <---------ARR11(3)    --------->At4g35610             --------->AHL20(1)               --------->AHL20(1)    <---------At4g35610             <---------AHL20(1)               --------->ARR11(3)           <-- ==================================================================================================== ->AGL15    <---------AHL20(2)      <---------AHL20(2)               <---------AHL20(1)         ----- --AGL15   --------->YAB1        <---------ICU4                 <---------AHL20(2)             <----- ---AGL1   --------->AHL20(2)   --------->ICU4                  --------->AHL20(2)           -------- -ZmHOX2a(1)--------->AHL20(2)  <---------YAB1             ----------->GT1                --------->YAB1 ============HOX2a_HOX2a      --------->YAB1             ---------->DOF2              =============== ->MYB59--------->WOX13(1)   <---------YAB1          ---------->DOF2--------->AHL20(2)<--------------   catttcagatcaattaaaatagaatgaaattttgataattaattaagtatgtgtataaagaaagaaataaatatattgcatcgttttccaaattatagtg  19973600                      --------------->AGL15                      <---------------AGL15 <---------TOE2(3)    ------>ZmHOX2a(1) -------WOX13(1)     --------->TOE2(3) =MADS_MADS          <-----------------AGL3          --------->AHL20(2)                       <------ ---->ATHB12      <-----------GT1                    <---------AHL20(2)          <---------ANAC46 ----YAB1    <---------YAB1      ----------->GT1     --------->YAB1       --------->YAB1      ------- ->YAB1--------->AHL20(2)   <---------HSFB2a(2)  <---------AHL20(2)      <---------YAB1   <---------- =====================================MADS_MADS  --------->AHL20(2)    --------->YAB1    --------->bZIP60(2) -AGL15<---------AHL20(2)<---------YAB1 --------->YAB1      ----------->RAV1(2) <---------TOE2(3)   attgacgaataaaatatgattttccttattttagaaggttaatcgtggtatttaattaaaacacctggtttatttatgatataacgtagacatgtcagtt  19973700                                                      --------->YAB1                                                     <---------YAB1                                                    --------->ARR11(3)                                                    <---------ARR11(3)     <---------AHL20(2)                        --------->AHL20(1)                           <--------     --------->AHL20(2)                        <---------AHL20(2)                          <---------    --------->AHL20(2)                  <---------MYB59 <---------YAB1                     --------->MYB52(1) --------->AHL20(2)                     --------->TOE2(3)                    --------->TOE1(2) ---At4g35610             <---------------AtSPL8<---------AHL20(2)           --------->TOE2(2)     -- -->At4g35610          --------->YAB1   --------->TOE1(3)<---------ICU4     ----------->RAV1(2)  <--- -HVH21  <---------AHL20(2)   <-------TEIL     --------->AHL20(2) ------->GAMYB     --------->AHL20(2)   caaatatttaattagttgattacaaagataagtacatgtcaacctaaaatttaatatcatcatttcaacccaaaaaaaacctgagattatatataacgga  19973800                                         --------->ATHB51                                         --------->ATHB12                                         <---------ICU4                                         -------->HAHB4                                        --------->AHL20(2)                                        <---------ATHB51                                   --------->ANAC58                                   ----------->GT1                                   --------->ANAC58                                 --------->MYB52(1)                              <---------TGA1a                              --------->bZIP60(1)                              <---------bZIP60(1)                              --------->ANAC55(2)                              --------->TGA1a                              --------->bZIP60(2)                              --------->O2                              =====================================bZIP_DOF                              <---------O2                              --------->ANAC58                              --------->ANAC58                              --------->ANAC55(1)                              <---------ANAC55(2)                          <---------AHL20(2)                           <---------MYB52(1)           <----------DOF2   --------->AHL20(2)    <----                          <-----------TGA1              <---------DAG2--------->ICU4        <--------                          <-----------HVH21        <---------ANAC58 <---------AHL20(2)      <--------                         --------->DREB2C(2) --------->ATHB12       <---------ICU4          ---------     --------->AtLEC2    --------->ANAC46<--------ATHB1--------------->AGL15                --------- -------------WRI1       --------->DEAR3(1)<---------WOX13(1)   >>>>>>>>>GT-1             --------->ZAT14 --GT1     <---------ARR11(3) --------->ANAC46     <---------ANAC58--------->AHL20(2)   ------------- ------->WOX13(1)       <------NtERF2   --------->ICU4----------------->AGL1            <------------ ---ZmHOX2a(2)         ------>NtERF2    <---------AHL20(2)   ----------->GT1      <------ZmHOX2a(2)   tcattcaatgcaagatgcttaatgccaccgtcacgtaacgaaataattgatttgcttcctttttggttaataaatattaaatagatcaaatgtgtacact  19973900  Previous    Next  AGI:  At1g53500.1    Description:  MUM4 (MUCILAGE-MODIFIED 4); catalytic. Identical to Probable rhamnose biosynthetic enzyme 2 (RHM2) [Arabidopsis Thaliana] (GB:Q9LPG6); similar to RHM3 (RHAMNOSE BIOSYNTHESIS 3), catalytic [Arabidopsis thaliana] (TAIR:AT3G14790.1); similar to RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1), UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic [Arabidopsis thaliana] (TAIR:AT1G78570.1); similar to hypothetical protein OsI_010699 [Oryza sativa (indica cultivar-group)] (GB:EAY89466.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39485.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ59500.1); contains Int Range:  from: 19970612    to: 19973425    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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