Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <-------TEIL                                     ----------->GT1     <-------TEIL           --------->CCA1(2)                                 --------->YAB1    --------->TOE2(2)          <---------ARR11(3)                               ------->TEIL      <-------TEIL   --------->GLK1(1)                               --------->YAB1   --------->MYB52(1)   tccagaattcaagatacatatggtgttttagtttatgtaaaacaaaaaactattcaaaatgaatcgtaaaaaaccgagttacatacgttttctatatagt  19966500                                                                     --------->AHL20(2)                                                               <---------TOE2(3)                                                          -------->HAHB4                                                          --------->YAB1                                      <---------ARR11(3)  --------->ATHB51                                      --------->ARR14(2)  <--------HAHB4                                      <---------ARR14(2)  <---------ICU4                                      <-----------GT1     <--------ATHB1              ----------->GT1                                    <---------ARR14(2)   <---------YAB1               --------->ATHB12                         ----------->GT1            <---------ANAC55(2)               --------->YAB1                      ------>MYB83  <---------KAN4(2)    <---------ATHB51            <---------YAB1                      ------>MYB46(1)--------->GLK1(1)   --------->AHL20(2)          --------->ICU4                      --------->MYB52(1)            --------->ANAC55(2)    <---------AHL20(2)              --------->AtMYB61     --------->ARR14(2)   --------->ICU4   --------->AHL20(2)    -----     <---------YAB1 <---------MYB59 ---------->TaMYB80 --------->YAB1<---------AHL20(2)     <--------   tttagtttttataaaaccaaaaccaaactgaaaaaccgaatatccatccctattacataataattaagaatttatattatatagagaatgattaaaacta  19966600                                                 <---------ICU4                                      --------->AHL20(2)                                     <---------AHL20(2)   --------->ALFIN1                               --------->ANAC55(2)        <-----------RAV1(1)       <------MYB83         --------->ANAC58      <---------ANAC55(2)  <-----------GT1    --------->ANAC58  --------->HSFB2a(2)    --------->DAG2        <---------AHL20(2) <---------AHL20(2)        --------->ANAC58  <---------HSFB2a(2)   ---------->DOF2     --------->TOE2(3)    --------->AHL20(2)      --------->ZAT2  <------MYB46(1) ---->ZAT14         ----------->RAV1(1)<---------AHL20(2)--------->LBD16            <---------MYB46(3) ---GT1  --------->ANAC58--------->AHL20(2) <---------AHL20(2)      <---------ZAT2<--------P      ---   tactataaagcaaacaatagtccaacattaaataagtattttaaattttaatttttacccgtgttgcaccagcacggattacaagttggttctataagat  19966700                                                                    --------->ANAC46                                                                    --------->ANAC58                                                    --------->MYB46(3)                                                   -------->P    <-------TEIL                    ----                                                <---------MYB52(2)  --------->ANAC58        <--------           <----------DOF2                    --------->ZAT6    --------->CCA1(2)         <---------AHL20(2) ------>ALFIN1                      --------->TOE2(3)      ---------->DOF2     --------->AtMYB61 ----   gtgttgtttctgtctttttttttttttttttggctcaacatcaactttccactaaccaattcaaaggtacaagtcattcgaccaaaacatattttaacca  19966800                                                          ------->GAMYB                                                         --------->MYB46(3)                                                        ------>MYB46(1)                                                        -------->P                                                       ------>MYB83                                                       ------>MYB46(1)                                                       --------->MYB52(1)                                                     <---------MYB111(1)           xxxxxxxxxxxxxxxxxx                                                     <---------MYB59               xxxxxxxxxxxxxxxxxx                                                     <---------MYB55(2)           ------->GAMYB                                                     --------->MYB46(3)           --------->AtMYB61                                                    --------->ANAC58              --------->TOE2(3)                                                    --------->ANAC46             --------->MYB46(3)                                               --------->ANAC58                  <---------MYB55(2)                                               --------->ANAC58                 ------>MYB83    <---------ATHB12                  <---------WOX13(1)------>MYB83            ------>MYB46(1)     < -->MYB46(1)      <-----------GT1   --------->YAB1  --------->ANAC58       <-----------GT1         -- ---GT1------->TEIL           --------->ZAT6   --------->ANAC46   <---------At5g28300            <--- -->MYB83        --------->YAB1    <---------YAB1  -------->P    <-----------GT1-------->P     <xxxxx   aatacaatgaatcagtctattatcaccttgaaacactatgatggattcaacgctacccaaccgaaattcactgtatttttccaaccacaacgagatgaat  19966900                                                                                                  <--                                                                                                  ---                                                                                                 <---      xxxxxxxxxxxxxxxx>smallRNA(i)                                                               ----    --------->ANAC58                                                                             ----    --------->ANAC46                                                                            -----    --------->ANAC58           --------->MYB46(3)     --------->ANAC58                       ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ANAC46                       --------  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          ----------->HVH21                          ---------  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------ATHB12                          ---------- <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------MYB55(2)                          <---------ARR14(2) xxx>smallRNA(se3)           <-----------GT1 --------->MYB46(3)                     --------->ARR14(2) xxxxx>smallRNA(se3)    <----------DOF2     --------->ANAC58                        <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        --------->ANAC46                        xxxxxxxxxxxxxxxx>smallRNA(i) ------->ANAC46     --------->YAB1          --------->ANAC58      <---------HSFB2a(2)    --------->ARR14(2) --------GT1       <---------ATHB12--------->AtMYB61  --------->ANAC58  ---------->DOF2 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxsmallRNA(si3)   *TSS   <-----------GT1         --------->HSFB2a(2)   =============   tacaccacgactctaagtgaaatcatcttttaaaccaccaaaattcacccaatgacacgaaaacatttctagcacaaagaaaatcaaatcctatcctgag  19967000 ----ZmHOX2a(2) ------>CCA1(2) ------ARR11(3)                                                          --------->ANAC46 ----->AGP1                                                      ------>NtERF2 ----->ARR11(3)                        <---------ZAT14          --------->ANAC46 ---->GLK1(1)                          --------->ZAT14          --------->ANAC58 ->LBD16     --------->ANAC58         --------->ALFIN1          --------->ANAC58 >TOE1(2)    --------->ANAC46    ==========================HOX2a_HOX2a--------->DAG2 ->RAV1(2)   --------->ANAC58    ------>ZmHOX2a(2)         <-----------ARR10                       -- ====HOX2a_HOX2a             <---------YAB1         ------>ZmHOX2a(1)---------->DOF2         <-------   atccaatccaattccaagctattagtccctcatgatccgagtgtagaacatgtcctaatagcatctacgccaaaagcgcaacttcagaagggttttgact  19967100                                                                         <---------ZAT2                                                                      ------->GAMYB                                                                    -------->P                                                                  --------->MYB46(3)                                                                 <------ZmHOX2a(2)                                                                <---------ARR14(2)                                                                --------->ARR14(2)                                                              --------->LBD16               --------->MYB59                               ------->GAMYB       --------->ZAT6                                       <---------LBD16              <---------ANAC46    <----------DOF2      ----------------->AGL1        --------->ANAC58  --------->ZAT2  <---------ANAC58 ---->ZmHOX2a(1)     ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------ANAC58 ----GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->ANAC58--------->LBD16 --------->ARR11(3)   cctctgctttcactatttcggtcctaagcctaaaacggacatactaatccgactgatactcaaccggatcaaccgggctgagacaaaaatttcttgaagt  19967200                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                              ------>NtERF2                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                           <---------DOF5.7(2)                                                                                          -----------                                                                                          --------->WRKY38(1)                                                                                          --------->WRKY12                                                                                   <------ZmHOX2a(1)                                                                     <---------AHL20(2)  --------->DOF5.7(2)                <----------DOF2                                      --------->AHL20(2)<---------MYB46(3)             <---------ARR11(3)                              <---------CCA1(2)    xxxxxxxxxxxxxxxx>smallRNA(s)             --------->ARR11(3)                            <---------ALFIN1     <-----------RAV1(2)     --------->ATHB12         --------->HSFB2a(2)       --------->ANAC46      <-----------HVH21<-----   <----------DOF2       <<<<<<<<<TBF1           <----------DOF2 <---------YAB1 =====================   cgaggctttattggagagctttccttcttcttctacaatccaaatggttttcttttctcccccatttctcattaattctccatcaggagtcgttgacggc  19967300                                                             <---------ZAT2                                                             --------->ZAT2                                                            ------>MYB83                                                            ------>MYB46(1)                                               <---------ARR14(2)                          ------->TEIL                                               --------->ARR14(2)                      --------------                                               <---------ARR11(3)                  ------>MYB46(1)                                               --------->ARR11(3)                  ------>MYB83 ------>At4g35610                              <-----------ARR10                   -------->P -------At4g35610                       ------>ZmHOX2a(2) ------->GAMYB           <---------ALFIN1 ----NtERF2                        --------->LBD16       --------->MYB46(3)      --------->DEAR3(1) ------->RAV1(1)                   <------NtERF2        --------->ANAC58         <---------MYB46(2) --RAP2.6(2)                      <---------LBD16       --------->ANAC58         <---------MYB111(2) --ATERF1(2)                     <---------LBD16<------ZmHOX2a(2)              ------>NtERF2 ->ANAC46 --------->ANAC46 <---------ARR14(2)  <---------ARR14(3)              --------->LBD16 ->ATERF1(2)          ----------->GT1   =============HOX2a_HOX2a             ------>ZmHOX2a(2) >RAP2.6(3)           <---------ANAC55(2)      --------->ARR14(3)           <------ZmHOX2a(2) >HVH21   --------->ANAC58 <-----------ARR10  =====================================HOX2a_HOX2a -NtERF2  --------->ANAC58 --------->ARR14(2) <------ZmHOX2a(1)            --------->ARR14(2) ========RAV        --------->YAB1--------->LBD16------>ZmHOX2a(2)         <---------ARR14(2) <xxxxxx   agcatagctaatacgccttgaatcatgtaaatctgcccgggatcgataggatcttcacaaccaagctcgaaaaccacgatccgcctacctctgtaccttc  19967400  Previous    Next  AGI:  At1g53480.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03090.1) Range:  from: 19966882    to: 19968380    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g53490.1    Description:  DNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO39480.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083) Range:  from: 19966935    to: 19970620    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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