Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------ANAC58   <---------ANAC46   <---------ANAC58 <---------AHL20(2) ------AHL20(2)       --------->ZAT2 ----->AHL20(2)       <---------At4g35610                                                      <----- -----AHL20(2) --------->GLK1(2)                           <----------DOF2                    <------ ->AHL20(2)    <---------ARR11(3)                          <---------DAG2                     <------ --AHL20(2)    --------->ARR11(3)                       <-----------GT1                       ------- ->AHL20(1)   --------->CCA1(1)                     <----------DOF2   >>>>>>>>>TAC1           <------ >AHL20(2)    --------->RVE1(1)               <---------ZAT6   <---------AHL20(2)             <------   tattttcttgtataaaaaatctcgagcttccaagttccaacaccaattgtgttacttttgactttttaatcgagtgttttttttgttttgtagtttgcgt  19961900         --------->TGA1a         <---------O2                                           ----------->GT1         --------->O2                                          ----------->GT1         <---------TGA1a                                      --------->At4g35610 ------HVH21                                               <---------At4g35610 ---ANAC58                                           -------->HAHB4 ---ANAC58                                           --------->ATHB12             <---------YAB1 -->ANAC55(2)                      ----------->GT1  --------->ICU4              --------->YAB1 ---ANAC46                    --------->ZAT14       <---------YAB1             <---------YAB1-------- ---ANAC55(1)         <---------AtMYB61         <---------AHL20(2)     ----------->GT1    -----------   gagagcgagacacgagtctatgttttggtctgagtagtcgtgaaatgttttaaaatgattcagaagcggaaaatagaaaatatgataatatcacctggtt  19962000                                                                                           <---------AHL20(2)                                                                                           --------->AHL20(2)                               ------------>CBF                                          --------->CCA1(2)                              --------->YAB1                                            --------->ARR11(3)                          <------ZmHOX2a(2)                                   --------->WOX13(1)                         --------->ARR11(3)                    --------->AHL20(2)   ---------->DOF2  <------------CBF  --------->STY1(2)                         <---------AHL20(2) --------->YAB1------ <---------ICU4    --------->ANAC58                           --------->AHL20(2)<---------ATHB12    - --->GT1<----------DOF2  <---------ARR11(3)                 --------->YAB1  ------------>CBF   <----- >RAV1(2)          --------->ANAC58               <---------ICU4   --------->AHL20(2)   <---------ARR11(3)   taaacattgtctttttagccctagcaagatcatcacaatctcacatggttcaacattaccaaaaataaataaaacaaaatcaatcaaaaagatttaaata  19962100                                                                                   --------->HSFB2a(1)                                                                                  ------->TEIL                                                                                 --------->MYB52(1)                                                                               <---------MYB52(2)                                            <---------DAG2              <---------AHL20(1)                                          ------>MYB83  ------>ZmHOX2a(1)  <---------AHL20(2)                                          ------>MYB46(1)               --------->AHL20(1)                                       --------->MYB46(3) <----------DOF2----------->TBP           <---------ICU4 <---------HSFB2a(2)        ---------->ID1    --------->AHL20(2) --->AHL20(2)             --------->HSFC1(1)<----------DOF2    XXXXXXXXXXXXXXXXXXXX>MIR825 ---------->GT1           --------->HSFB2a(2)        <-----------GT1 --------->AHL20(2)    <--------- ----AHL20(2)   <---------YAB1  <---------ATHB12 <----------DOF2   --------->AHL20(2)   <-----------GT1   tttagaaaaatcaacattaccattacatctagaaatcaagaaccaacttttctttttcctctttctcaaaaaaatatataaacgaacgttttactttgaa  19962200                       <-----------GT1                                             --------->GLK1(2)                   --------->ARR11(3)                                             <---------GLK1(2)                   <---------ARR11(3)                                             <---------ARR11(3)                 ----------->ARR10                                       --------->MYB52(1)       ---              <------NtERF2                                             <---------WRKY38(1)     <----            <---------DEAR3(1)                                    <---------At4g35610  --------------        <-----------ARR10                                 <---------MYB52(1)      --------->ARR11(3)<        --------->GLK1(2)<---------YAB1                  <-------GAMYB  <---------WRKY12        -----        <---------ARR11(3)                               <---------At4g35610    ----------->ARR10 --- -DOF2  --------->ARR11(3)           <-------TEIL       <---------MYB46(3)  ------->GAMYB      <-----   gaaaaacaaaaatctcggcgagattttactatagaaagtttcattccttctaacatggccgttgattcaactgatcaacggcgagattttgttgtaagga  19962300        <<<<<<<<<<<<<<<<<LFY                                                            <---------DEAR3(1)   --------->At5g28300                                                                --------->LBD16 <---------DEAR3(1)                                              -------->HAHB4      --------->ANAC46 --->ZmHOX2a(2)                                                  --------->YAB1     <---------LBD16 -----ARR14(2)                                                  --------->ICU4     ------>MYB46(1) ------->WRI1                                           --------->HSFB2a(2)        ------>MYB83 ---------------------WRI1                    --------->YAB1    <---------YAB1   --------->AtMYB61 ---->ARR14(2)                              --------->ANAC58  --------->YAB1     <---------ALFIN1 -------->HVH21          ---------->DOF2    --------->ANAC58  <---------ICU4    --------->MYB46(3) -ZmHOX2a(1)  --------->YAB1             --------->WRKY18(1) --------->ICU4   --------->ANAC46   tcgacggtgaagacaatggtgactcagaaaagttttggagagagtcaagcattaacttctggcataatgataagagctctaaaccacccggaggtgaaga  19962400                                                             <---------------------WRI1                         <---------ANAC46                   <-----------HVH21                        <---------LBD16                    --------->DEAR3(1)                        <---------At4g35610              <---------At5g28300                        --------->ATERF1(1)             <---------ALFIN1                        ------>NtERF2                 <------ZmHOX2a(2)                        <------NtERF2                --------->AGP1                                 -                       <---------RAP2.3(1)           --------->ARR14(2)                          ----                      <---------RAP2.3(2)            <---------ARR11(3)                          <---                      <---------DEAR3(1)      ===============HOX2a_HOX2a                 --------->ANAC46          <----------DOF2<---------DEAR3(1)   --------->ATERF1(1)                        --------->ANAC58        --------->HSFC1(2)       <---------ZAT6      <---------ARR14(2)    <---------ATHB12    ------        <---------HSFC1(2)--------->LBD16     <------ZmHOX2a(1)   --------->HSFC1(2)     --------->ANAC58        <---------HSFB2a(1)<------NtERF2     <---------ATERF1(1)  <---------HSFC1(2)   --------->MYB46(3) --------->MYB52(1)  <---------LBD16  <---------GLK1(1)--------->MYB46(3)--------->WOX13(1)   -------   agacgacggaagctttgatttcatgcggcggagtagtgagaaatcggaggagccagatccaccgtcgaagcttataaatcaatttctcaacaagcaaaaa  19962500                                                                                        <---------LBD16                                                                                      --------->ARR14(2)                                                                                    <---------HSFC1(2)                                                                                ------->GAMYB                                                                              --------->At4g35610                                                                             <---------DOF5.7(2)                                                                             --------->MYB52(1)                                                                            <---------WRKY38(1)                                                                            <---------WRKY12                                                                            <---------WRKY45                                                                           --------->DOF5.7(2)                                                                          <-----------HVH21                                                                         <---------bZIP60(1)    <----   --------->LBD16                                                       <---------ETT(2)   --------- <---------LBD16                                                         <---------ANAC46   <-------- -------->MYB52(1)                          <---------At4g35610     ------>ZmHOX2a(1) <---------ARR14(2) ----->HSFC1(2)               --------->At4g35610            --------->ARR14(2) ------------>AtMYB77- ------HSFC1(2)     <---------ETT(2)        --------->At4g35610  ------>ZmHOX2a(1)  --------->HSFC1(2) --->DAG2           --------->ETT(2)   ----------->RAV1(2)   <---------ARR14(2)--------->ANAC46 ----- --->DOF2  <---------GLK1(1)  <---------At4g35610   --------->AHL20(2)<-----------RAV1(1) --------->LBD16   gcttccggtgatgaaatctctctcgacatggaagctaacatgcctgagcttcaaaaaaatacggttcctcctctgtcgtcaacggcagtttccggttctg  19962600                      <---------RAP2.3(1)                      ------>NtERF2                     <---------DEAR3(1)                     <---------RAP2.3(3)                     <---------RAP2.6(2)                     <---------ANAC46                     --------->ATERF1(2)              <------NtERF2             ------>NtERF2             ----------->RAV1(1)            --------->ANAC46            --------->ANAC58            --------->ANAC58         <------------AtMYB77         --------->MYB46(3)        <---------At5g28300       --------->ARR14(2)       <---------ARR14(2)       --------->MYB52(1)      ----------->HVH21 <---------ANAC46    --------->ANAC46--------->RAP2.6(3)                                          <----------DOF2 -----At4g35610    --------->MYB52(1)         ----------->HVH21               --------->ANAC58  <---- >ARR14(2)------->GAMYB<------NtERF2         <-----------HVH21                --------->ANAC58 ------ -ARR14(2)--------->DEAR3(1)    --------->YAB1--------->ALFIN1            <-----------HVH21 <-------GAMYB -------->REM1(1) ----------->HVH21     --------->ARR14(2)           <---------ZAT14       <---------MYB46(3) ---->At4g35610   ----------->TGA1      <---------ARR14(2)           --------->ZAT14     <---------MYB52(1)   cttcaccagtaaccgcgccagtgacggcgagttatcgtaatggaaccggtgatgcgattagacggagacagaacagagtcacgctttctccgtctgttaa  19962700                                                            --------------->AGL15                                                        <---------ZAT18                                                        --------->ZAT18                                                       --------->ALFIN1                                                      <---------------AtSPL8                                                      <---------------AtSPL3                                                      --------------->AtSPL8                                                     <---------ANAC46   <---------YAB1                                  <---------ZAT14                        <----------DOF2 -----TOE2(3)                                      --------->ZAT14               <------ZmHOX2a(1) ---->DOF2     --------->ICU4           <------ZmHOX2a(2) ------->TEIL   <---------------------WRI1   agatggtgatagtagtgaagatgaagaaaacagagtagatggatcagaggttgtgaagtgtacctctaatagatcgacgatgaggactaagactttgatg  19962800  Previous    Next  AGI:  At1g53470.1    Description:  mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78610.1); similar to hypothetical protein OsI_008239 [Oryza sativa (indica cultivar-group)] (GB:EAY87006.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47443.1); contains InterPro domain Membrane protein, At2g17000, predicted (InterPro:IPR016688); contai Range:  from: 19962255    to: 19965246    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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