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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
DOF2
<---------
DAG2
<------
ZmHOX2a(1)
------
AHL20(2)
------
AHL25(3)
---->
AHL12(1)
-----
AHL12(1)
---->
AHL20(1)
---->
AHL20(2)
-----
AHL20(1)
---->
AHL25(2)
-----
AHL20(2)
---->
AHL25(3)
-----
AHL25(2)
------->
TEIL
-----
AHL25(1)
<---------
GLK1(2)
<---------
AHL20(2)
---->
AHL20(3)
--------->
DOF5.7(1)
<---------
ATHB51
-----
AHL20(3)
----------->
RAV1(1)
<---------
AHL12(2)
---->
AHL25(1)
<----------
ID1
--------->
AHL12(2)
-->
WOX13(2)
------>
ZmHOX2a(1)
<---------
YAB1
--------->
WOX13(2)
---------
---
WOX13(2)
---------->
ID1
---------->
DOF2
<---------
WOX13(2)
<---------
ZAT18
tattaggagtactttttgttttgttcctaaacaacaaaaagattgttatgagtttaagcctatgtgtaaattatggaccttgatgtactattgcacacag
19809700
<---------
AGP1
--------->
GATA12
<---------
GATA12
--------->
RVE1(2)
<---------
bZIP60(1)
<---------
ARR14(3)
<---------
ATHB12
--------->
ARR11(3)
<---------------
AGL15
--------->
At5g28300
--------------->
AGL15
<---------
ICU4
------>
ZmHOX2a(2)
------>
ZmHOX2a(1)
--------->
YAB1
--------->
RVE1(1)
<-----------------
AGL2
--------->
YAB1
<------
ZmHOX2a(2)
<-----------------
AGL3
--------->
ICU4
--------->
ARR14(3)
<---------
ICU4
--------->
MYB46(3)
---------->
DOF2
---------->
DOF2
--------->
ANAC58
----------->
GT1
--------->
YAB1
---------->
DOF2
--------->
bZIP60(1)
--------->
ARR14(2)
<---------
WOX13(2)
--------->
ANAC58
<---------
YAB1
<---------
AHL20(2)
<---------
GATA12
-
--------->
ANAC58
--------------->
AGL15
<---------
YAB5
<---------
ARR14(2)
--------->
GATA12
<
--------->
ANAC58
<-----------------
AGL1
--------->
YAB1
--------->
DOF5.7(1)
<---------
AHL12(1)
---
>
ANAC46
<---------
ATHB12
--------->
ANAC46
<---------
YAB1
<---------
ARR11(3)
<---------
AHL12(2)
-----
tggcaggccaataaagacttcctcttaaaggcaaccaatgatatcatcatggtaaaaaagatcttaaatttgaaacaaattttcagattgaacttcaaac
19809800
------->
TEIL
--------->
GATA12
<---------
ANAC46
<---------
ANAC58
<---------
AHL20(2)
--------->
AHL25(1)
--------->
AHL12(1)
<---------
AHL12(1)
<---------
AHL25(1)
<--------
HAHB4
-------->
ATHB1
--------->
ATHB51
<---------
ICU4
<---------
AHL25(3)
<----------
DOF2
--------->
AHL20(2)
<---------
DOF5.7(1)
<---------
ATHB12
<------
ZmHOX2a(1)
--------->
AHL25(3)
=================
HOX2a_HOX2a
--------->
ICU4
--------->
TOE1(2)
--------->
YAB1
<---------
ATHB51
-------->
ZAT14
------>
ZmHOX2a(2)
--------->
WOX13(1)
---------
---------
ZAT14
--------->
ARR11(3)
--------->
RVE1(2)
--------->
RVE1(2)
<---------
ANAC55(2)
------>
ANAC46
<---------
RVE1(2)
<-----------
GT1
<---------
ANAC58
--------->
YAB1
--------->
ANAC55(2)
---->
ZAT6
<---------
ARR11(3)
<---------
YAB1
<---------
GATA12
<---------
TOE2(3)
<---------
ICU4
actaaactaggaaaactgatctttagttttcatattactatcaattatttcttgaatctaaatcaaacaaactaatgaaaatgtttttaatacttatcta
19809900
<---------
AHL20(2)
<---------
YAB1
--------->
AHL25(3)
--------->
AHL25(2)
--------->
AHL12(2)
<---------
AHL12(2)
<---------
AHL25(2)
--------->
KAN1
<---------
AHL12(3)
------->
TEIL
<----------
DOF2
--------->
AHL12(3)
--------->
AtLEC2
<---------
DOF5.7(1)
<---------
ICU4
<---------
YAB5
<---------
DOF5.7(1)
--------->
AHL12(2)
--------->
ANAC46
<
<----------
DOF2
<---------
AHL20(2)
--------->
RVE1(2)
--------->
ICU4
<-------
TEIL
<---------
DOF5.7(1)
--------->
AHL20(2)
--------->
ZAT2
<---------
ATHB12
--------->
TOE1(2)
<---------
GATA12
<----------
DOF2
--------->
At4g35610
<---------
ICU4
------------
--------->
GATA12
--------->
TOE2(3)
<---------
At4g35610
--------->
YAB1
------------
>
RVE1(2)
<----------
DOF2
--------->
AHL25(3)
<---------
ZAT2
--------->
ICU4
<----------------
tgtaaatctctttttctttctttcccaaactttaatttttatttttctgagctagcacatcaacgtaatcatgcacttattccaccagagaaacgtacaa
19810000
<-----------
GT1
--------->
YAB1
*
TSS
--------->
PCF5
<---------
DOF5.7(1)
<---------
YAB1
<---------
ANAC58
--------->
ALFIN1
<-----------
GT1
--------->
ARR11(3)
<---------
ANAC58
<<<<<<<<<<<<<<<<
LFY
<-----------
GT1
------------>
CBF
<---------
ARR11(3)
<------------
CBF
--->
AtSPL8
<----------
DOF2
<-----------
GT1
--------->
RVE1(2)
<---------
ICU4
--->
AtSPL3
------>
NtERF2
<---------
DAG2
--------->
WOX13(2)
------>
ZmHOX2a(1)
-----
WRI1
--------->
LBD16
<----------
DOF2
------------>
CBF
--------->
TOE2(3)
-------
gaacacagtggtccatctcccgactttacttcaccttttaaacccttcaatttcgtcaacaatatcatcaagtcccattcctcaaaca
ttgcttaaccta
19810100
<----------
DOF2
<---------
DOF5.7(1)
<---------
MYB55(2)
<---------
MYB111(2)
----------->
GT1
--------->
MYB46(3)
<------
ZmHOX2a(1)
<---------
MYB52(2)
==============
HOX2a_HOX2a
------>
ZmHOX2a(1)
<------
ZmHOX2a(2)
<-----------
GT1
>>>>>>>>>>
MYB80
--------->
ARR11(3)
<---------
RVE1(2)
------->
GAMYB
<---------
ARR11(3)
<---------
ANAC55(2)
<---
-------->
AGL15
----------->
RAV1(1)
<---------
ANAC46
<----------
ID1
---------->
DOF2
----
ttagagtttccttcctccaacaaaccatctttataagactccaaa
atggagggtaagagatcacaaggacaaggttacatgaaaaagaagtcttaccttg
19810200
<-
---
<-----
<---------
ANAC55(2)
<-----
<---------
LBD16
<-----
<---------
RVE1(2)
<-------
GAMYB
--------->
CCA1(2)
<------
MYB83
<---------
MYB46(3)
<---------
ARR14(2)
<------
MYB46(1)
--------->
MYB52(2)
--------->
ARR11(1)
<--------
P
<---------
ANAC58
--------->
ARR11(3)
<------
MYB83
<---------
ANAC58
<---------
ARR11(2)
<------
MYB46(1)
<---------
ANAC46
<---------
RVE1(2)
<------
ZmHOX2a(1)
--------->
YAB1
<------
<---------
ARR11(3)
--------->
DOF5.7(1)
<---------
ZAT6
<---------
ATHB12
<-----
--------->
ARR14(2)
<---------
KAN1
--------->
MYB59
--------->
WOX13(1)
<-----
----------->
ARR10
--------->
ANAC55(2)
--------->
MYB111(2)
<---------
ZAT6
--------->
ALFIN1
<--
------
HSFB2a(2)
--------->
ARR11(2)
--------->
MYB46(2)
--------->
HSFB2a(2)
<------
NtERF2
----->
HSFB2a(2)
<---------
ARR11(2)
--------->
MYB111(1)
<---------
HSFB2a(2)
<---------
MYB46(3)
tggaagaagatatggagactgatacggatgaagaagaggaagtaggtagggatagagttagagggtctagaggtagcatcaatcgtggtggctcgttgcg
19810300
---------
DOF2
------>
ARR14(2)
--------->
DOF5.7(1)
----
RAP2.3(2)
---------->
DOF2
----
ANAC58
<---------
RVE1(2)
----
RAP2.6(2)
<---------
At4g35610
---------->
DOF2
---
LBD16
<---------
ZAT2
--------->
ARR11(2)
----
ANAC58
--------->
At4g35610
--------->
LBD16
--------->
AtLEC2
<---
----
ANAC46
--------->
ZAT2
----------->
GT1
<---------
LBD16
<-------
TEIL
<---------
At4g35610
-------
ARR14(2)
<-------
TEIL
<---------
YAB1
<-----------
HVH21
--------->
ALFIN1
---------->
DOF2
<----
gctttgccaagtagatagatgcacagctgatatgaaagaggcaaaactgtatcaccggagacacaaagtgtgtgaagttcatgcaaaggcatcttctgtc
19810400
<-------
TEIL
<---------
At5g28300
--------->
SPL7(1)
------
<---------
ANAC46
<------
<---------
ANAC58
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
ARR11(3)
--------------->
AtSPL3
--------->
ARR11(2)
--------------->
AtSPL8
<---------
ARR11(3)
<---------------
AtSPL8
<---------
ARR11(2)
<----------
DOF2
--------->
MYB52(1)
<---------
ARR14(2)
------>
MYB46(1)
<---------
DOF5.7(2)
--------->
ARR14(2)
------>
MYB83
<------
MYB83
--------->
WOX13(2)
<---------
RVE1(2)
--------->
MYB52(1)
<---------
ANAC55(2)
<-----------
GT1
<---------
AGP1
--------->
AtMYB61
<------
MYB46(1)
------>
MYB83
--------->
GATA12
--------->
MYB46(3)
--------->
MYB59
------>
MYB46(1)
<---------
GATA12
<------
ZmHOX2a(1)
<---------
MYB55(1)
<---------
WOX13(2)
<---------
CCA1(2)
-------
DOF2
<---------
MYB52(2)
<---------
ZAT14
--------->
TOE2(3)
<---------
DAG2
<----------
DOF2
-----
DOF5.7(1)
------->
GAMYB
--------->
ZAT14
<---------
MYB59
<----------
DOF2
<--------
tttctctcaggacttaaccaacgcttttgtcaacaatgcagtag
gtaacgtacaacctaatttacccttcaaaaaactttttgtctggatctttgaatgg
19810500
--------->
ZAT2
<---------
ZAT2
--------->
At4g35610
<---------
At4g35610
<----------
DOF2
<----------
CDC5
--------->
ATERF1(1)
<------
NtERF2
<---------
DEAR4(2)
--------->
ALFIN1
<---------
DEAR3(1)
--------->
ARR11(3)
<------
ZmHOX2a(1)
----->
GT1
<---------
At4g35610
<---------
ATERF1(1)
---
YAB5
------->
TEIL
--------->
ATERF1(1)
-
AtLEC2
--------->
YAB1
<---------
REM1(1)
<-----------
RAV1(2)
tttttttgagttcttgaaacag
gtttcatgacctccaagagtttgatgaagctaagagaagttgcaggaggcgcttagctggacacaatgagcgaagaag
19810600
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AGI:
At1g53160.1
Description:
SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor. Identical to Squamosa promoter-binding-like protein 4 (SPL4) [Arabidopsis Thaliana] (GB:Q9S7A9;GB:Q9SMX8); similar to SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G15270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69773.1); contains InterPro domain Squamosa promoter-binding protein (InterPro:IPR017238); contains InterPro domain Transcription factor, SBP-box; (InterPro:IPR004333)
Range:
from: 19810089
to: 19810969
Orientation: Forward
Links:
TAIR
MIPS
AIP
Please cite the corresponding
publications
when using AthaMap.
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