Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <----------DOF2         <---------DAG2   <------ZmHOX2a(1) ------AHL20(2) ------AHL25(3) ---->AHL12(1) -----AHL12(1) ---->AHL20(1) ---->AHL20(2) -----AHL20(1) ---->AHL25(2) -----AHL20(2) ---->AHL25(3) -----AHL25(2)                                                           ------->TEIL -----AHL25(1)                        <---------GLK1(2)            <---------AHL20(2) ---->AHL20(3)                      --------->DOF5.7(1)            <---------ATHB51 -----AHL20(3)               ----------->RAV1(1)                  --------->WOX13(2) ---->AHL25(1)              <----------ID1                        <---------AHL12(2) -->WOX13(2)            ------>ZmHOX2a(1)    <---------YAB1       --------->AHL12(2)        --------- ---WOX13(2)        ---------->ID1---------->DOF2                 <---------WOX13(2)     <---------ZAT18   tattaggagtactttttgttttgttcctaaacaacaaaaagattgttatgagtttaagcctatgtgtaaattatggaccttgatgtactattgcacacag  19809700                                                         --------->GATA12                                                         <---------GATA12                                                         <---------AGP1                                                         --------->RVE1(2)                                      <---------bZIP60(1)<---------ARR14(3)                                   <---------ATHB12      --------->ARR11(3)                   ------>ZmHOX2a(1)--------->YAB1      --------->RVE1(1)                   --------------->AGL15        --------->At5g28300                   <---------------AGL15    <---------ICU4 ------>ZmHOX2a(2)                  <-----------------AGL1    --------->YAB1<------ZmHOX2a(2)                  <-----------------AGL3   --------->ICU4--------->ARR14(2)         --------->YAB1        --------->MYB46(3)    ---------->DOF2         ---------->DOF2      --------->ANAC58 ----------->GT1         <---------ICU4---------->DOF2--------->bZIP60(1)<---------ARR14(2)       <---------WOX13(2)     --------->ANAC58<---------YAB1  <---------AHL20(2)   <---------GATA12 <  --------->ANAC58--------------->AGL15    <---------YAB5--------->ARR14(3)        --------->GATA12 -  --------->ANAC58<-----------------AGL2 --------->YAB1--------->DOF5.7(1)  <---------AHL12(1)    --- >ANAC46<---------ATHB12  --------->ANAC46 <---------YAB1<---------ARR11(3)<---------AHL12(2)   -----   tggcaggccaataaagacttcctcttaaaggcaaccaatgatatcatcatggtaaaaaagatcttaaatttgaaacaaattttcagattgaacttcaaac  19809800                                                    ------->TEIL                                                    --------->GATA12                                               <---------ANAC46                                               <---------ANAC58                                          --------->AHL25(1)                                          --------->AHL20(2)                                          <---------AHL20(2)                                          --------->AHL12(1)                                          <---------AHL25(1)                                          <---------AHL25(3)                                          -------->ATHB1                                          <--------HAHB4                                          --------->ATHB51                                          <---------AHL12(1)                  <----------DOF2         <---------ICU4                 <---------DOF5.7(1)     <---------ATHB12       <------ZmHOX2a(1)                 --------->AHL25(3)       =================HOX2a_HOX2a      <---------ATHB51   --------->TOE1(2)       --------->YAB1--------->ICU4 ---------ZAT14  ------>ZmHOX2a(2)     --------->WOX13(1)                                   --------- -------->ZAT14<---------ARR11(3)   --------->RVE1(2)     --------->RVE1(2)              --------->ANAC55(2) ------>ANAC46 --------->ARR11(3) <---------YAB1    <---------GATA12     --------->YAB1  <---------ANAC55(2) ---->ZAT6     <---------RVE1(2)<-----------GT1<---------ANAC58        <---------TOE2(3)<---------ICU4   actaaactaggaaaactgatctttagttttcatattactatcaattatttcttgaatctaaatcaaacaaactaatgaaaatgtttttaatacttatcta  19809900                                    <---------AHL20(2)                                   <---------YAB1                                   --------->AHL25(3)                                  --------->AHL12(3)                                  <---------AHL25(2)                                  --------->AHL25(2)                                  --------->AHL12(2)                      --------->KAN1                                  <---------AHL12(3)                   ------->TEIL                 <----------DOF2  <---------AHL12(2)                --------->AtLEC2        <---------DOF5.7(1)      <---------ICU4                  --------->ICU4       <---------DOF5.7(1)     --------->AHL12(2)           --------->ANAC46                        <       <----------DOF2       <---------AHL20(2)        --------->RVE1(2) --------->ICU4      <-------TEIL      <---------DOF5.7(1)    --------->AHL20(2)<---------At4g35610--------->YAB1           --------->TOE1(2)  <---------GATA12         <----------DOF2     --------->At4g35610<---------ICU4         ------------  --------->GATA12         --------->TOE2(3)   <---------ZAT2    <---------ATHB12        ------------ >RVE1(2)    <----------DOF2 --------->AHL25(3)--------->ZAT2    <---------YAB5     <----------------   tgtaaatctctttttctttctttcccaaactttaatttttatttttctgagctagcacatcaacgtaatcatgcacttattccaccagagaaacgtacaa  19810000                                     <-----------GT1          --------->YAB1             *TSS        --------->PCF5         <---------DAG2                <---------YAB1             <---------ANAC58     --------->ALFIN1       <-----------GT1   --------->WOX13(2)                        <---------ANAC58 <<<<<<<<<<<<<<<<LFY   <-----------GT1     ------------>CBF --------->RVE1(2)       <------------CBF --->AtSPL8          <----------DOF2<-----------GT1         <---------ARR11(3)     <---------ICU4 --->AtSPL3       ------>NtERF2<---------DOF5.7(1)          --------->ARR11(3)------>ZmHOX2a(1) -----WRI1       --------->LBD16<----------DOF2        ------------>CBF      --------->TOE2(3)-------   gaacacagtggtccatctcccgactttacttcaccttttaaacccttcaatttcgtcaacaatatcatcaagtcccattcctcaaacattgcttaaccta  19810100                          <----------DOF2                         <---------DOF5.7(1)                 <---------MYB55(2)                 <---------MYB111(2)                                 ----------->GT1                 --------->MYB46(3)                             <------ZmHOX2a(1)                 <---------MYB52(2)                      ==============HOX2a_HOX2a            ------>ZmHOX2a(1)                            <------ZmHOX2a(2)    <-----------GT1 >>>>>>>>>>MYB80                     --------->ARR11(3) <---------RVE1(2)------->GAMYB                         <---------ARR11(3)<---------ANAC55(2)    <--- -------->AGL15----------->RAV1(1)            <---------ANAC46 <----------ID1   ---------->DOF2  ----   ttagagtttccttcctccaacaaaccatctttataagactccaaaatggagggtaagagatcacaaggacaaggttacatgaaaaagaagtcttaccttg  19810200                                                                                                   <-                                                                                                  ---                                                                                               <-----                     <---------ANAC55(2)                                                       <-----                    <---------LBD16                                                            <-----                  <---------RVE1(2)                                                        <-------GAMYB       --------->CCA1(2)                     <------MYB83                                 <---------MYB46(3)      <---------ARR11(2)                     <------MYB46(1)                              --------->MYB52(2)      --------->ARR11(3)                   <--------P                                   <---------ANAC58      <---------RVE1(2)                  <------MYB83                                   <---------ANAC58      <---------ARR11(3)                 <------MYB46(1)                                <---------ANAC46      --------->ARR11(1)           <------ZmHOX2a(1)                            --------->YAB1<------      <---------ARR14(2)       --------->DOF5.7(1)  <---------ZAT6             <---------ATHB12<-----      --------->ARR14(2) <---------KAN1 --------->MYB59                      --------->WOX13(1)<-----    ----------->ARR10--------->ANAC55(2)--------->MYB111(2)        <---------ZAT6 --------->ALFIN1<-- ------HSFB2a(2)  <---------ARR11(2)    --------->MYB46(2)      <---------HSFB2a(2)    <------NtERF2 ----->HSFB2a(2)  --------->ARR11(2)    --------->MYB111(1)     --------->HSFB2a(2)   <---------MYB46(3)   tggaagaagatatggagactgatacggatgaagaagaggaagtaggtagggatagagttagagggtctagaggtagcatcaatcgtggtggctcgttgcg  19810300 ---------DOF2 ------>ARR14(2)                 --------->DOF5.7(1) ----ANAC58                    ---------->DOF2 ----RAP2.3(2)            <---------RVE1(2) ----ANAC58           <---------At4g35610                    ---------->DOF2 ---LBD16             <---------ZAT2                   --------->ARR11(2) ----RAP2.6(2)        --------->At4g35610            --------->LBD16          --------->AtLEC2   <--- ----ANAC46           --------->ZAT2----------->GT1<---------LBD16         <-------TEIL <---------At4g35610 -------ARR14(2) <-------TEIL<---------YAB1    <-----------HVH21 --------->ALFIN1---------->DOF2<----   gctttgccaagtagatagatgcacagctgatatgaaagaggcaaaactgtatcaccggagacacaaagtgtgtgaagttcatgcaaaggcatcttctgtc  19810400                                                --------->SPL7(1)                                                <-------TEIL<---------At5g28300                ------                                             <---------ANAC46                                 <------                                             <---------ANAC58                          ------>ZmHOX2a(2)                                             <---------ANAC58                        --------->ARR11(3)                                            --------------->AtSPL3                   <---------RVE1(2)                                            --------------->AtSPL8                   <---------ARR11(3)                                            <---------------AtSPL8                   <---------ARR11(2)                     <----------DOF2       --------->MYB52(1)                        --------->ARR11(2)                 ------>MYB46(1)           <---------DOF5.7(2)                       --------->ARR14(2)                 ------>MYB83           <------MYB46(1) --------->WOX13(2)           <---------ARR14(2)                --------->MYB52(1)      <------MYB83   ------>MYB83                  <---------AGP1               ------->GAMYB            <---------ANAC55(2)<-----------GT1           --------->GATA12              --------->MYB46(3)       --------->MYB59 ------>MYB46(1)               <---------GATA12       <------ZmHOX2a(1)              <---------MYB55(1)<---------WOX13(2)          <---------CCA1(2) -------DOF2  <---------MYB52(2)  <---------ZAT14    <---------MYB59      <----------DOF2   <-------- -----DOF5.7(1)--------->AtMYB61  --------->ZAT14    --------->TOE2(3)    <---------DAG2<----------DOF2   tttctctcaggacttaaccaacgcttttgtcaacaatgcagtaggtaacgtacaacctaatttacccttcaaaaaactttttgtctggatctttgaatgg  19810500                                                                          --------->ZAT2                                                                          <---------ZAT2                                                                          --------->At4g35610                                                                          <---------At4g35610                                                                       <----------DOF2                                                                      <----------CDC5                                                                   --------->ATERF1(1)                                                                   <------NtERF2                                                                  <---------DEAR4(2)                                                                 --------->ALFIN1                                                                 <---------DEAR3(1)       --------->ARR11(3)                                       <------ZmHOX2a(1) ----->GT1                                     <---------At4g35610<---------ATERF1(1) ---YAB5                                      ------->TEIL      --------->ATERF1(1) -AtLEC2               --------->YAB1      <---------REM1(1) <-----------RAV1(2)   tttttttgagttcttgaaacaggtttcatgacctccaagagtttgatgaagctaagagaagttgcaggaggcgcttagctggacacaatgagcgaagaag  19810600  Previous    Next  AGI:  At1g53160.1    Description:  SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor. Identical to Squamosa promoter-binding-like protein 4 (SPL4) [Arabidopsis Thaliana] (GB:Q9S7A9;GB:Q9SMX8); similar to SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G15270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69773.1); contains InterPro domain Squamosa promoter-binding protein (InterPro:IPR017238); contains InterPro domain Transcription factor, SBP-box; (InterPro:IPR004333) Range:  from: 19810089    to: 19810969    Orientation: Forward Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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