Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->ARR11(3)                           <---------ARR11(3)                                           <---------ANAC58           --------->TOE1(2)                       <----------DOF2                      <---------ANAC58    <-------GAMYB <---------LBD16              <---------WRKY12                --------->ANAC58 ------->ARR14(2)<---------bZIP60(2)     <------ZmHOX2a(2)                     --------->ANAC46 --------ARR14(2)<---------ANAC46       --------->ARR11(3)       --------->MYB46(3)   --------->ARR11(3) --->At4g35610   ----------->RAV1(2) --------->ANAC58        --------->TOE1(1) --------->ANAC58 ----At4g35610----------->HVH21      --------->ANAC58   <---------PCF5   <---------AtLEC2  <---------WRKY18(1)   tgattcggttgaacatatgacctggagaagctcttgcacaaggatcaagtcaactttgggacctcgaacaactctccatggacgcaaatgtcttgaccat  19796000                       <---------AHL20(2)                       --------->AHL20(2)                      <---------YAB1                      --------->ICU4                    <--------HAHB4                                                  <---------ZAT14                    <---------ICU4      <---------MYB52(1)                          --------->ZAT14                    --------->ATHB51 =========================HOX2a_HOX2a       ------>ZmHOX2a(1)                   --------->ICU4    ------>ZmHOX2a(2)        ---------->DOF2  <---------ANAC58   ---                   <---------YAB1  --------->ARR11(3)  <------ZmHOX2a(1)       <---------ANAC58  <---          <-----------HVH21<---------AHL20(1)        <---------TOE1(2) ------>ZmHOX2a(1)  --------->At4g35610   gactccaaacacagtcacttcataattaatatgttttgatctcttagttgagtcttaggaactaaaaagcatcctcttagtccttgtgtagtagcttcag  19796100                                      --------->ARR11(3)       <---------AtLEC2              <---------------AGL15      <---------REM1(2)              --------------->AGL15      --------->ZAT14       ---------->DOF2    <---------ZAT14               <-----------GT1               <---------ZAT14 <---------ZAT18 <---------ANAC46               <---------ANAC58                --------->ZAT18 <---------ZAT14 ------>GLK1(2)                 <---------ANAC58   --------->ANAC46 ----------->HVH21<---------WRKY38(1) ------GLK1(2)              ------->TEIL <----------DOF2--------->MYB46(3)      --------->ZAT14   aatgtgtgtacatggaagagagacctcatgaatttcttactatctttagataaacacaacaacttgtggactgaccatttagtacagtcaaagtctcttg  19796200                                                                   --------->AHL20(2)                                                                   -------->ATHB1                                                                   <---------AHL20(2)                                                                   <--------HAHB4                                                                   --------->ATHB51                                                                   <---------ICU4                                                                  <---------ATHB51                                                                  <---------ATHB12                                                                  --------->ICU4                                                   <-----------------AGL3                                                   ----------------->AG                                                   <-----------------AGL2                                                   ----------------->AGL1                                   <---------AHL20(2)------>ZmHOX2a(1)                        <------                                  <---------AHL20(1)--------->TOE2(3)                        --------                                  <---------AHL20(2)--------------->AGL15                  --------->ANAC55(2)                           --------->ZAT6          <-----------------AGL1              <-----------HVH21            ------>ZmHOX2a(2)     --------->AHL20(2)<---------------AGL15<----------DOF2   <---------ANAC55(2)   tcttgaaaatgtgatcggaaaactttgaaacactaattaatttgttctcgttttccttatctggttcaattatttctttgaaacaactcagtcatgtaac  19796300                    ------>MYB83                    ------>MYB46(1)                  --------->AtMYB61                 --------->MYB46(3)             <------ZmHOX2a(2)                -------->P<---------YAB1  <---------ANAC46                  <---------ANAC46             --------->At4g35610          <---------ANAC58               <---------ARR14(2)         -             <---------HSFC1(2)           <---------AtLEC2             <------MYB83       -----------             --------->HSFC1(2)           <---------ANAC58             <------MYB46(1)    ----------- -----GT1   --------->ANAC58            <---------YAB1           --------->MYB52(1)    <---------AHL20(2) --->HVH21  --------->ANAC58     ------------>CBF               ---------->DOF2  ----------->GT1    <   agttcttaacacagaagctaccaacgtttttattagccaattttgcttggatcaaaccctctataccaaagggaggtttcgagttgtattatatgacgag  19796400                            --------->ANAC58                            --------->AtLEC2                                      <---------ATERF1(1)                            --------->ANAC58                                <---------ANAC58                         *TSS                                               <---------ANAC58 -------->HSFB2a(1)     --------->HSFB2a(2)                                --------->ZAT2 >HVH21            --------->HSFC1(2)           --------->CCA1(2)   <-----------HVH21------>ZmHOX2a(1) >TGA1   <---------ZAT18<---------HSFB2a(2)--------->ZAT14--------->ANAC58--------->ANAC58 ---------HSFB2a(1)<---------HSFC1(2)      <---------ZAT14--------->ANAC58--------->ANAC58   aaaccttctactggacttagaggcttctccaagcacaggtttcagttcagagacgagaacaggctatggctgtcacaagcttggctcctccatgggtcat  19796500                                                                    --------->GLK1(2)                                          --------->ANAC58          ------->TEIL                          <---------GLK1(2)                         <-----------ARR10                         --------->At4g35610                       <---------GLK1(2)              ===                   --------->At4g35610    --------->ANAC46       <---------ANAC55(2)              ---               <---------MYB52(1)         --------->ANAC58       --------->ANAC58                 ---               <-----------HVH21        <---------ALFIN1         --------->ANAC55(2)             ----              --------->LBD16          <---------REM1(2)       --------->YAB1                    <---            <---------LBD16         ---------->ARF1           <---------ATHB12               ------>ZmHOX2a(1)         <----------DOF2 <---------HSFC1(2)              --------->TOE2(3)               --------->ARR14(2)        <---------ANAC58 <---------At4g35610             --------->TOE1(3)               <---------ARR14(2)        <---------ANAC58 --------->HSFC1(2)     <---------ATHB12 --------->ANAC58<---------ALFIN1----   cttgagactagctttccggtcagtagcagcttcttcttgtctccacacaaatcaaaaaaccctaatcacgaatctctccattcccacttcgtttcctctc  19796600          <---------ANAC58          <---------ANAC58         <-------TEIL     --------->MYB59    <-----------RAV1(2)   <---------MYB52(1) ===============RAV                                                          --------->YAB1 --->NtERF2<---------SPL7                                                   <---------YAB1 -------->RAV1(1)                                                         --------->YAB1 ------->HVH21                    <-----------GT1        <---------YAB1   <---------ICU4       <----- ------ETT(1)         <---------YAB1         --------->ICU4              --------->ICU4   <---------DAG2 ----->ANAC46--------->SPL7    --------->ARR14(2) <---------AHL20(2)     <---------YAB1   <----------DOF2   cgacagtcaggttcgtccgaagttttgattttggattcaccatcgtacttattcaattgatgaaagtttctcttcatgatgatagtttgcaacttttctt  19796700                                                                                          <---------At5g28300                                                                               --------->HSFB2a(2)                                                                   <---------ICU4    --------->ARR11(3)                                                                --------->YAB1 <---------HSFB2a(2)<--                                                                --------->AHL20(2)   <---------ARR11(3)                  <----------DOF2                            --------->YAB1 <----------DOF2    <-----                <---------ZAT18                  <---------At4g35610      <---------ZAT2 <-----------GT1        <---------TOE2(3)     ---------->DOF2    --------->At4g35610      --------->At4g35610  ------ -----DOF2      --------->ZAT18        ---------->ID1 <---------GLK1(1)   <---------At4g35610  <-----   tgggaatttagaggttagggcattaacttcatcaaagttttgttttttttctgatgaaatctctaataaaaattgcagctttgagaagatgttacagtgc  19796800                                                                    --------->ANAC58         --------                    <---------ARR11(3)                              --------->AtLEC2     --------->KAN4(2)                    <---------GLK1(2)                     ---------->DOF2               --------->KAN4(1)                    --------->ARR11(3)                  ----------------->AGL1          <----------TaMYB80       ---------->DOF2 <-----------GT1                  ----------------->AG <---------------AGL15   <---------------AGL15       ---------->DOF2          =====================================MADS_MADS  ========================================================================MADS_MADS     <---------KAN4(1)  <-----------------AGL3     ------>ZmHOX2a(1)     <---------MYB46(3)        --------------->AGL15 -------At4g35610   --------->ARR14(2)             <-----------RAV1(1)   <---------GLK1(2)   <------- ----ZAT18          <---------ARR14(2)           <---------ZAT2     --------->ANAC58   <---------KAN4(2) --->ZAT14        ----------->ARR10             ------>MYB46(1)    --------->WOX13(1)  ---------->TaMYB80 ----ZAT14     <---------REM1(1)                ------>MYB83     --------->WRKY18(1)----------->GT1   agaagctataaaaggagatgtagattttctcctcaaaggagttggagaccaagctgttgccaaagaagtcaagcaaattcttgaaatggtatattctcga  19796900  Previous    Next  AGI:  At1g53110.1    Description:  chorismate mutase. similar to PPI2 (PROTON PUMP INTERACTOR 2) [Arabidopsis thaliana] (TAIR:AT3G15340.1); similar to PPI2 (PROTON PUMP INTERACTOR 2) [Arabidopsis thaliana] (TAIR:AT3G15340.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN81802.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701) Range:  from: 19793857    to: 19796157    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g53120.1    Description:  RNA-binding S4 domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO39290.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942) Range:  from: 19796425    to: 19798446    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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