Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ----------->GT1                                                      --------->YAB1                             <---                                                      <---------AHL20(1)                <---------ARR14(2)                                                      <--------ATHB1                    --------->ARR14(2)                                                      --------->ATHB51                 xxxxxxxxxxxxxx                                        <------MYB83  <---------ICU4                 <---------TOE2(3)               <---------AHL20(2)       <------MYB46(1)  <---------AHL20(2)         <-----------GT1            ------->TEIL             <<<<<<<<<MYB98  --------->ICU4                ----------->HVH21  --------->DAG2              <---------AHL20(2)     <---------ATHB51       --------->ZAT6      <---- ---------->DOF2         --------->ICU4--------->MYB59--------->AHL20(2)  --------->MYB52(1)  ------- ----ID1 --------->ANAC55(2) --------->AHL20(2)      <---------ATHB12   <---------MYB52(2)  <------MYB46(1) >YAB1  <XXXXXXXXXXXXXXXXXXXXMIR825  <---------MYB52(1)  --------->AHL20(2)>>>>>>>>>>AtWER  <------MYB83   caaaaaagtttatgtatttttttggcaaatattaaataagttaggtttttttccaataattttttgtaaataaaactaacagtatttgacgatttggtta  19659100                                                                     --------->MYB46(3)                 <---------ANAC46                                    ----------------->AGL2             <-------GAMYB                                           ----------------->AGL3            <---------MYB46(3)                                      --------->ANAC58        ------->GAMYB                                               --------->ANAC46     <---------DOF5.7(2)                                       <-----------GT1     --------->MYB52(1)                                    <---------AHL20(2)   --------->DOF5.7(2)---------->DOF2                      <---------AHL20(1) ------TOE2(3)<---------MYB52(1)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     - xxxxxxxxx>smallRNA(se3)          ----------->GT1          --------->AHL20(2)                      xx -----DOF5.7(2) <---------At5g28300      --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      -- -->DOF5.7(2)<-----------HVH21--------->ATHB12 <---------AHL20(2)   --------->ANAC58         --------   acgtcgttaacggtctgttacggcgaaaggagtaattggaaaaacataataaatcgtgtattttatttccacccaaaattagtttgtgtatttttctgac  19659200                                --------->AHL20(2)                            --------->ARR11(3)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <---------ARR14(2)                            <---------ARR11(3)     --------->DAG2         --------->ARR14(2)    ---------->DOF2   --------->HSFB2a(2)                                          <---------ATHB12 ------>GAMYB         <---------HSFB2a(2)                               <---------AHL20(2) xxxxxxxxxxxxxx>smallRNA(i) <---------GLK1(2)                          --------->AHL20(2) --------->GT1 --------->MYB52(2)                                    <---------ARR11(3) --->HVH21   <---------MYB52(1) <---------AHL20(2)                   --------->ARR11(3)   aacgaaaaaagttcagttagttttctagcagattttaaatagttcgggttttttttggaaattttcccaaagattttataaacaaatcaacttgtttaag  19659300                         --------->ANAC55(2)                         --------->ANAC46                                       <---------ATHB12                         --------->ANAC58  <---------YAB1                    <---------AHL20(2)                         <---------ANAC55(2)                       --------->YAB1                         --------->ANAC58  <---------TOE2(3)       <---------ICU4--------->YAB1                         --------->ANAC55(1)                --------->YAB1  --------->AHL20(2)            <---------YAB1          --------->YAB1   <----------DOF2  --------->MYB52(1)    <--------            <---------TOE2(3) --------->YAB1     ---------->ID1   <---------ATHB12          <--------   tcttctagcttattaagtttgagttatacgtaacataatcatattaagtttgtttctttcattcataaatcataacgaataaatcatacatcatctgttg  19659400                                                    <------------CBF                                                   <---------ICU4                       <-----------TBP                                                   --------->ATHB51                <---------WOX13(1)                                                  --------->ICU4                  <---------ANAC58                           ------>ZmHOX2a(1)      <---------YAB1                  <---------ANAC58                          --------->TOE2(3)     --------->YAB1          <---------ARR11(3)          --------->HSFB2a(2)               <---------ARR11(3)          --------->ARR11(3)     <----- <-----------GT1      --------->KAN4(2)     --------->ARR11(3)          <-----------ARR10<---------YAB1 -MYB46(3)<---------HSFB2a(2)          ----------->TBP          --------->GLK1(1) <------------CBF ---RAV1(1)      ----------->GT1     ------>ZmHOX2a(1)          <---------GLK1(1)--------->ATHB12   gaataacttcttctagggcctgaaaattcctaaattttcctacaaaaatctcataattgtttttggatttctaaaatctaagttgattgtttttatagga  19659500                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                 <---                                                     --------->SPL7                         ---------                                              <---------YAB1                                ---------       --------->GLK1(2)                    <---------ICU4                                  ---------       *TSS                                --------->ICU4                                   ---------    --------->ANAC58              <----------DOF2   <------ZmHOX2a(1)                       ---------    --------->ANAC58           ------->TEIL<---------YAB1                                   --------- -ZmHOX2a(1)        <----------DOF2      --------->YAB1                  <----------DOF2  --------->MYB52(1)   aatggcaagaatttgctgtttcctttggaattgtacctttgagtcatgatgagaggacgacgtttcaatgtaagacttttcaagaacagagcaaacgtaa  19659600                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                ----- ---------ANAC58                                                                                ----- ---------ANAC58                                                                               <----- ---------ANAC46                 --------->ZAT14                                               ------ ------WOX13(1)                 <----------DOF2                                                <----- >YAB1                          <---------DAG2                                                <------NtERF2 >ANAC58                      ------>MYB83                         ---------->DOF2           -------- >ANAC58--------->ANAC58      ------>MYB46(1)                  <----------ID1               --------- >ANAC46--------->ANAC58     <---------ALFIN1           --------->LBD16                    <---------LBD16 >ANAC55(1)         --------->MYB52(1)              <---------ALFIN1                <---------ARR11(3) >ANAC55(2)       <---------MYB52(2)  --------->ANAC46  --------->At5g28300         --------->ARR11(3)   ttgcttacacactctataaaactaactaaacccactttacacacattacaacttccaccgtgaaaaaaacaaagacatggacaaaacatcttcgccggaa  19659700     <---------ALFIN1        --------->AtMYB61     --------->AtMYB61   <---------WRKY12   ------>NtERF2        <---------MYB52(1) ----->At4g35610        --------->WRKY18(1) ------At4g35610       <-----------HVH21 ------HSFB2a(1)       --------->LBD16 ----->HSFB2a(1)      --------->ANAC46 ----->TaMYB80   <-----------ARR10 -----ARR14(2)   --------->ARR14(2) ---->ARR14(2)   <---------ARR14(2)           <---------ANAC58 ---->GLK1(2)   ------>MYB46(1)     --------->LBD16                                          -------- ----GLK1(2)    ------>MYB83--------->MYB46(3)<---------ANAC58                         <---------ICU4 --->ARR14(2)   <---------CCA1(2)   ----------->GT1                                --------->ICU4 ----ARR14(2) --------->AtMYB61 <---------ALFIN1<---------ZAT6     <-------GAMYB -------------------- ->LBD16      <---------MYB111(1) <---------LBD16<---------ZAT14  <---------MYB46(3)  <---------YAB1 >LBD16      --------->ANAC46------->GAMYB    <---------ANAC46    --------->MYB55(2)--------->YAB1  -   tctgccaccatctccaccaaatctccgtcaacctccaccggaaaaatggagtgttcttggttcgacgatggttgcattcttggcattgattatttcgtca  19659800                                                 --------->WOX13(1)                                                <-------TEIL                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              <---------ARR14(2)         <------NtERF2                  --------->ATHB12        --------->LBD16                <---------YAB1      <---------LBD16             ====================HOX2a_HOX2a                           ------>NtERF2    --------->DEAR3(1)            =====================HOX2a_HOX2a                         <---------ETT(1) --------->AtMYB61                ------>ZmHOX2a(1) --------->YAB1                         ---------- ->TOE2(3)               --------->ALFIN1     --------->ARR14(2)                  ----------->HVH21 ->WRI1--------->LBD16--------->DAG2  ------>ZmHOX2a(2)                         ----------->RAV1(2) -------->MYB46(3)  ---------->DOF2 <---------ARR11(3)                    <---------ATHB12 --------->ANAC46   aaaccatcgccggaatcaaatccaaaggtgttcgtcctgatctcattggatccatcatcgttcattacgcttcccaatggctccctgacctctccgacat  19659900                                    <---------At4g35610                                    --------->At4g35610                                   ----------->RAV1(1)                                 --------->At4g35610                                ----------->RAV1(1)                               <-----------RAV1(2)                              --------->LBD16                              --------->At4g35610                             --------->RAP2.3(2)                             ----------->RAV1(1)                            --------->RAP2.3(1)                           --------->At4g35610                           <---------ZAT2                           ------>NtERF2                           --------->ZAT2                           <---------At4g35610                           <---------ATERF1(1)                          --------->DEAR3(1)                         --------->ERF1                        --------->At4g35610                       --------->ANAC46                       ------->GAMYB--------->ZAT2                      <------------AtMYB77                      --------->MYB46(3)                     -------->P<------NtERF2                   --------->MYB46(3)                  --------->At4g35610         <---------ARR11(3)                 --------->ANAC58--------->ZAT2                 --------->ANAC46<---------ZAT2               <---------ANAC46                 --------->ANAC58<---------At4g35610          <---------ANAC58            --------->WRKY38(1)================RAV            <---------ANAC58            --------->WRKY12--------->ATERF1(1)           <---------At5g28300            ----------->HVH21--------->DEAR3(1)<---------At4g35610          <---------At4g35610--------->ANAC46 --------->ARR11(3)  ------>ZmHOX2a(1)<---------MYB55(2)  <-----------HVH21<---------MYB52(1)     <---------HSFB2a(1) ->HVH21  --------->At4g35610--------->RAP2.6(2)       <-----------HVH21       --------->HSFB2a(1)   cgtcctaaactccgatgaccagcaaccgcagccgcagcagcagtcagagagcttctctgttactgcgtttgtgatgaagaaacgttccttcgtcgaaact  19660000  Previous    Next  AGI:  At1g52770.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT3G15570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46021.1); contains InterPro domain NPH3; (InterPro:IPR004249) Range:  from: 19659507    to: 19661402    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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