Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ------>ZmHOX2a(2)                                                                           <---------At4g35610                                                                           --------->At4g35610                                        <------MYB83                       <------ZmHOX2a(2)                                        <------MYB46(1)                   --------->ARR14(2)                                       --------->MYB59                    <---------ARR14(2)                             <---------ZAT18                              <---------ARR11(3)                             --------->ZAT14                              <---------AGP1        <----               <---------bZIP60(1)    <---------MYB55(1)       ====================HOX2a_HOX2a  -----      ----------->RAV1(1)    <---------ZAT14      <---------ALFIN1    <---------LBD16           ----- <------ZmHOX2a(1)           --------->ZAT18    >>>>>>>>>>>>>>>>>LFY <---------LBD16        --------- --------TOE2(3)  --------->MYB52(1) <---------MYB52(1)        ------>ZmHOX2a(1)         --------->WOX13(1) ----->TOE1(2) --------->bZIP60(1)  <----------DOF2            ===================HOX2a_HOX2a  <-----   ttaggatgcaacaagggacatcacggtccagtacactgcgttaggtttactcccactggtttatcctatgcctcgggatctgaagacgggacaatcagaa  19648500                       --------->LBD16                  --------->ARR14(2)                  <---------ARR14(2)    --------->ANAC58  --------->LBD16    --------->ANAC58 <---------HSFB2a(2)      <------ZmHOX2a(1) -----ARR14(2)   <---------GLK1(1)         <---------HSFB2a(2) --------->ALFIN1 ---->GLK1(2)--------->ANAC58          --------->STY1(2)     <---------ANAC58 ---->ARR14(2)   --------->GLK1(1)     <---------STY1(2)     <---------ANAC46 >YAB1       --------->ANAC58  --------->ANAC58              <---------ANAC58 ----GLK1(2) --------->ANAC46  --------->ANAC58         --------->YAB1      ---------->DOF2 <--------   tctggcaaacaacaccagcaaatcccgaagagaacgaaactagctcgaggagagtgaagcatagcgtggatgaagtttcaaagaagattgaaggctttca  19648600                                                       <---------ZAT18               --------->ARR14(2)                      --------->ZAT18               <---------ARR14(2)          <---------At4g35610          ----------->GT1                  --------->At4g35610--------->DAG2          --------->ATHB12    ---------->DOF2--------->LBD16    <---------ANAC55(2)    ---------->DOF2         --------->ICU4 --DOF2   <----------ID1       ----------->RAV1(2)     <---------SPL7                <---------YAB1   catcaacaaagaaggaaaaaccgcagagaaaccatctgatacttaagctaaactgagcgtacaaaaagcctctatatgtcttagttcatgatttgctatg  19648700                                           ------>ZmHOX2a(2)                                          --------->GLK1(1)                         <---------AHL20(2)                                          <------ZmHOX2a(2)                        --------->AHL20(2)                                          <---------GLK1(1)                        --------->AHL20(1)                <---------ICU4           <---------ARR14(2)                        <---------AHL20(2)                --------->ATHB12         --------->ARR14(2)                <-------GAMYB                --------->YAB1           <---------ARR14(3)                ----------->GT1               --------->ICU4            <-----------ARR10                ----------->GT1              <---------WOX13(1)         <---------ARR11(3)             <---------ANAC58      --------->HSFB2a(2)                --------->ARR14(3)          --------->TOE2(2)      <---------HSFB2a(2)                --------->ARR11(3)    --------->YAB1 --------->AHL20(2)   <-----------GT1<---------YAB1     ---------->DOF2   <----------DOF2  <---------ANAC58       <-----   ttttgtttccagactgaatgattatacagagaaaacaaacaaagatctccctctcttcttttgaatcaaaacatgggtgttaaaatttaatagttttctt  19648800                                                                                             <------MYB46(1)                                                                                             <------MYB83                                                                                            ---------                                                                                           --------->ALFIN1                                                                                           <--------P                                                                                         --------->ZAT2                                                                        <---------ANAC58 <---------ZAT2                                                             <----------DOF2   <----------DOF2 <-----                                     ------->TEIL   <---------YAB1      <---------ANAC58<---------TOE1(2)      <----------DOF2          <----------ID1     --------->YAB1  <------------CBF      <---------TOE2(2) -----DOF2           <-----------------AGL3      <---------YAB1  <<<<<<<<<RAP2.2       <-----------RAV1(2)   tcaagtgtctttttcaatattgaactaaatttagggacgaatttgtgatttatgattatttgactttagattgggcttgggcttttttcgcaggttgggg  19648900                                 ---------->ID1                --------->At4g35610                <---------At4g35610            <-----------TGA1------>MYB83   ----------->GT1          ------>MYB46(1)                               --------------------->WRI1  ----------->GT1 ----------->HVH21 *TSS      --------->LBD16           ------>ZmHOX2a(1) >ALFIN1    <-----------HVH21    <---------CCA1(2)                <---------ATERF1(1) ----ANAC46--------->YAB1--------->DEAR3(2)   <---------LBD16<---------LBD16   <---------At4g35610<--   tataagggtaaaatcgtcatttgacagaccgacttgtctctctctatctggggaaaacgtctatcgggagactcctcttcgagctcatcttcttctctct  19649000                                                                           <-----------HVH21                                                                    <------NtERF2                                                                   --------->LBD16                                                                  <---------ANAC58                    ------>ZmHOX2a(2)                             <---------ANAC58                   --------->GLK1(1)                              <---------ANAC46                   <------ZmHOX2a(2)                             <<<<<<<<<E2Fc             ----------            <---------MYB46(3)                                   <---------LBD16    --------->DAG2          <-------GAMYB                                    <---------RVE1(1)   <------NtERF2          <---------ANAC58                                --------->ARR11(3) <---------LBD16          <---------ANAC58                                <---------ARR11(3) <---------ANAC46         <---------MYB46(3)                         <---------ZAT6>>>>>>>>>>E2Fa  ---------->DOF2      <----------DOF2   <----------DOF2           <---------At5g28300     <-----------RAV1(1)    <---------YAB1 <---------GLK1(1)      <---------TOE1(2)<---------CCA1(1) --------->ETT(1) --------DOF2  <---------ZAT18<----------DOF2    <-----------GT1 <<<<<<<<<E2Fd<---------LBD16<-------   ctttttatctttggttgtgcgatctcctttctctttcaatctccaaggattttactgtgagatatttggcgggaaaatgtcggggaaaggtgctaaaggt  19649100                                                                                  <--------P                                                                               --------->LBD16                                                                              <-----------RAV1(2)                                                                 --------->HSFB2a(2)     <---------LBD16   <----------ID1                            <---------HSFB2a(2) <---------YAB1 --------->At4g35610 <------ZmHOX2a(1)--------->ZAT6  --------->ZAT2    --------->YAB1 >DOF2         --------->MYB52(1)  <----------ID1   <---------ATHB12 <---------ZAT2<-------TEIL    <- --TOE2(3)--------->GLK1(1)   --------->YAB1       <-----------HVH21 <---------At4g35610 <---------YAB1   ttgattatggggaaacccagcggtagcgacaaggataaggacaagaagaagcctatcactcgttcttctcgagctggtctccaggtagattataatctcc  19649200                --------->LBD16                                        ------>ZmHOX2a(2)               --------->ANAC55(2)                                   --------->ARR11(3)               <---------ANAC58                                      <---------ARR14(2)               <---------ANAC58                             --------->ATHB12               <---------ANAC55(2)                     ----------->HVH21               <---------ANAC55(1)                   <---------At4g35610            <--------P  <---- <---------ALFIN1          <----------DOF2           --------->At4g35610          ----------->GT1---- --------ALFIN1<---------ANAC46                      ----------->RAV1(2) <---------ANAC46     -------   ctcacactctaagtcttccgtgtctgtttctttgggaatcgaaatggtcttatacacctgaacgattagtagatcgcgtttaagtggtagatcgatgaga  19649300                      ----------->RAV1(2)                      --------->ZAT2                      <---------At4g35610                      <---------ZAT2            <------MYB46(1)            <------MYB83            ----------->GT1        <---------GLK1(2)        <---------ARR14(2)        --------->ARR11(1)        --------->ARR14(2)      ----------->ARR10     --------------->AGL15     <---------------AGL15    <-----------------AGL3    <-----------------AGL2                               <<<<<<<<<MYB2     <---------At4g35610    <-----------------AG                               <------MYB46(1)     --------->At4g35610    ----------------->AGL2                             <------MYB83<---------ZAT6 -----GLK1(2)         --------->At4g35610           --------->CCA1(2)      --------->ZAT2         <-- ----->GLK1(2)      <-----------RAV1(2)            --------->ARR14(2)     <-----------RAV1(1)  <----- ---->ARR10--------->MYB59                         <---------ARR14(2)   <---------At4g35610    <-----   ttctgagctagatttggtaatttcagctgagaattagagacattgggatgcgagatttggttttctattgtgttatctgctggagaattgtttcattaag  19649400  Previous    Next  AGI:  At1g52730.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46029.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 19646197    to: 19648802    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g52740.1    Description:  HTA9; DNA binding. Identical to Probable histone H2A variant 3 [Arabidopsis Thaliana] (GB:Q9C944); similar to HTA11, DNA binding [Arabidopsis thaliana] (TAIR:AT3G54560.1); similar to unknown [Populus trichocarpa] (GB:ABK96206.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 19648936    to: 19650150    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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