Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                               <-----                                                                                              ------>ZmHOX2a(1)                                                                                           <---------ATERF1(1)                                                                                     <---------ARR14(2)                 --------->TOE2(3)                                                   <---------GLK1(2)      <---------HSFC1(1)                                            <---------MYB52(1) <-------TEIL--      --------->HSFC1(1)                                           --------->LBD16   --------->ARR14(2)      <---------HSFB2a(2)    ----------->GT1                     <---------LBD16    --------->At4g35610      --------->HSFB2a(2)   ----------->GT1                     ------>NtERF2       <---------At4g35610 --------GT1     --------->TOE1(3)   --------->TOE2(3)       ------>NtERF2        <-----------RAV1(2)   cacattttctagaatcaaacctcaaattagatgttaaaacattaaacctccaaactggttctctgcctccggtagtcaccagtatcagatgcgctcctcc  19645800    <------NtERF2                                               <---------ICU4   ------>NtERF2                                                --------->ATHB12  <---------bZIP60(1)                                           -------->ATHB1  <---------ATERF1(2)                                           <--------ATHB1  --------->ATERF1(2)                                           --------->ATHB51  <---------ANAC46                                             <---------ATHB51  --------->bZIP60(1)                                          <---------YAB1 --------->RAP2.6(3)                                           <<<<<<<<<<AGL24 ---------ATERF1(1)                                            <---------ATHB12 --------->TGA1                                                <<<<<<<<<<AGL22 ---------HVH21                                                --------->ICU4         <----------DOF2 ----->At4g35610                                               <<<<<<<<<<AGL20        --------->TOE2(3) ------At4g35610          <---------MYB52(1)         <---------ARR14(2)               --------->TOE1(3) ----->LBD16             <----------DOF2   ----------------->AGL1            --------->TOE2(3) ----LBD16  <----------DOF2     ---------->DOF2      --------->ARR14(2)   <-----------GT1 --------->HVH21  <---------GLK1(2)  ----------->RAV1(2)    ------------>ATHB5<---------YAB1   ggtgacggcaatgcctttccgattttcctttagtaaaagccctgggccaatttgggatttggccaattattgaatataacattataaactttaaaaaaca  19645900                           <---------AHL20(1)               --------->ANAC46               --------->ANAC58               --------->ANAC58             ------>MYB83  --------->AHL20(1)             --------->MYB52(1)             ------>MYB46(1)<---------AHL20(2)            --------->MYB55(1)           <---------MYB46(2)           --------->AtMYB61--------->AHL20(2)           <---------MYB111(2)           <---------MYB52(2)         <---------TOE2(3)           --------->MYB46(3)   <---------AHL20(2)           <---------MYB111(1)  --------->AHL20(2)           <---------MYB55(2)  <---------AHL20(2)                                                ----          --------->ANAC46 <---------AHL20(2)                                                   -----       --------->MYB46(3)  --------->AHL20(2)             <---------DAG2                  -----------     <-----------GT1   <---------AHL20(2)       <----------DOF2                           <----------    ---------->DOF2   --------->AHL20(2)   --------->YAB1 <----------DOF2  <---------At4g35610<------ --------->TOE2(3)    <---------AHL20(2)--------->YAB1 <-----------GT1  --------->YAB1    <----------   aaacattaaaccaccaaacgaaattttaatttatttatttaagaatcatactttgttttactttattttcaaaatcatgctgacaaaaaaaaaacgtaca  19646000                                        --------->AHL20(2)                                        <---------AHL20(2)                                       <---------AHL20(1)                                       <---------AHL20(2)                                       --------->AHL20(2)                                    <---------AHL20(1)                                    --------->AHL20(2)                                    <---------AHL20(2) ----->At5g28300                    --------->AHL20(1) ------>GT1                 <-----------GT1 ---->AtSPL3           <---------AHL20(2)   <-----------GT1 -----AtSPL8      <---------YAB1   --------->AHL20(2)                        <---------ANAC55(2) -TEIL           <---------TOE2(3) <---------AHL20(2)                        <---------YAB1 -----AtSPL3    <-----------GT1--------------->AGL15    ----------->GT1 --------->WOX13(1)   gtaaaatacactactgatttacgatttttttttctaaataaattatttacaaatggtattgtgaattgttttgtcaattacgaaaatatagggtcgctta  19646100                                                               <---------HSFB2a(2)                                                       ------>ZmHOX2a(1) <---------GLK1(1)                            --------->AHL20(2)--------->ARR11(3)         --------->GLK1(1)                   <------ZmHOX2a(1)      ---------->DOF2      --------->HSFB2a(2) ----------->RAV1(1)        <---------AHL20(2)<---------ARR11(3)   <---------REM1(1)             *TSS   ttgcaacatatgaaacgtataggaactaaattaaaaaatacaaataaaggtcttctccttcccgtctagatgtagaaatccctaaaacttgctactgttt  19646200                            --------->MYB46(3)                           --------->ANAC58                           ------>MYB83                           ------>MYB46(1)                           --------->ANAC46                      <-----------GT1                         <----------DOF2                  --------->AHL20(2)     <----------DOF2      <---------DAG2         <---------------AtSPL8     ------>ZmHOX2a(1)        <---------DAG2        <----------DOF2        <---------ANAC46   --------->ANAC58               <---------ZAT18  <----------DOF2        <---------ANAC58 --------->AtMYB61               ---------->ID1 <-----------GT1          <---        <---------ANAC58--------->MYB46(3)    ------>ZmHOX2a(1)        <-----------GT1         <-----   tgcatacggggcttgtacaaataaaaaccacccaattcctacgctttcctctacaaattgtccccttttttttttaacttttatactttcaattcatctt  19646300                                                                                      <---------LBD16                                                                                     <-------TEIL                                                                                    --------->ARR14(1)                 <------ZmHOX2a(1)                                                  --------->CCA1(2)               <---------TOE1(2)                                                    --------->GLK1(2)               --------->LBD16                                                     <---------GLK1(2)         <---------GLK1(1)                                --------->ZAT6           --------->ARR11(1)         --------->GLK1(1)                              <-----------GT1            --------->ARR14(2)   <---------ANAC46  --------->YAB1  <---------At4g35610--------->MYB52(1)         <---------ARR14(2) ------TOE1(2)<---------LBD16       --------->ANAC58   --------->AHL20(2)    <---------YAB1 -----DOF2   <---------LBD16        --------->ANAC58   <---------AHL20(2)  <----------DOF2   tggttctgtagaattcccaggaatcagcattccactgtaagctactggtttctctaattaactgtagatcgatcgaacttttatagattcgggattgttt  19646400                                            --------->At4g35610                                            <---------At4g35610                                     <---------GLK1(2)                                     --------->ARR11(3)                                     <---------ARR11(3)                                   ----------->ARR10                                         <-------                              --------->AHL20(2)                                             --------                              <---------AHL20(2)                                           <---------                              --------->AHL20(1)                                          --------->TOE2(3)                             --------->AHL20(2)             --------->TOE2(3)         <----------DOF2   ctcccaatatttctgtagaaattactacaaaaaaaattagattttcagctactctgagtctaccttgaatcgtttgaaatcgaaaaccctttcctttaat  19646500                                                             --------->ALFIN1                         <------ZmHOX2a(1)                 --------->TGA1a                       <---------TOE1(3)         <---------YAB1                 <---------ARR11(3)  - --AHL20(2)            <---------TOE2(3)      ----------->HVH21   <---------bZIP60(2) <---------MYB46(3) ->AHL20(2)      <---------TOE1(3)            ----------->TGA1  <-----------HVH21  <-----------RAV1(1) -DOF2           <---------TOE2(3)     >>>>>>>>>TBF1       <---------TGA1a--------->AtLEC2--------->ATHB12   ttcaaagagtcgcttaattagggtttaggatagatggagaagaagaaggtgacgattccacaagtgtgtcatggccattcaagacctgttgttgatttgt  19646600                                                     --------->YAB1                                                    <---------YAB1                                              --------->DAG2                 --------->MYB52(1)         ---------->DOF2                ----------->HVH21        --------->ANAC58                ------>ZmHOX2a(1)        --------->ANAC58                                   <<<<<<<<<              ----------->RAV1(2)   --------->At4g35610   <----------DOF2---------->DOF2    <<<<<<<<<         <---------ATHB12     ------>ZmHOX2a(1)----------->GT1     <---------ANAC58         <<<<<<<<< -------->ZAT14 ----------->TGA1<-----------HVH21----------->GT1   <---------ANAC58  <---------AHL20(2)   tctacagtccaattactcctgacggtttcttcctcatcagcgctagcaaaggtgataatacttttggtttcttacaaaagtttggatttttttggtcaat  19646700  Previous    Next  AGI:  At1g52730.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46029.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 19646197    to: 19648802    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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