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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                  --
                                                                                                 ---
                     --------->ANAC58                                                            <--
          ---------->DOF2      ----------->GT1                                                ------
-------->MYB46(3)    --------->ANAC58    --------->ZAT6                    <----------DOF2----------
---------ATHB12   <---------REM1(2)     --------->At4g35610 --------->ANAC46           --------->TOE2(3)
 
caaccattcgattaaaagctctacaagcttcactaggtaaattagctctactataagctctaaacacaatccaaaacactttagaactaatctcaaagta  19613700
                                                                         ----------->GT1
                                                                    ------->GAMYB
                                                                    --------->TOE2(3)
                                                                    --------->YAB1
<-----------GT1                  ---------->DOF2                   --------->MYB46(3)
------->YAB1                  --------->ANAC58                --------->TOE2(3)
------>ICU4                   --------->ANAC58             <---------GLK1(2)            --------->ANAC58
-------YAB1                 ---------->DOF2 <---------ANAC58--------->ARR11(3)          --------->ANAC46
--->AHL20(2)        ---------->DOF2         <---------ANAC58<-----------ARR10           --------->ANAC58
>DOF2            --------->AHL20(2)         <---------ANAC46<---------ARR11(3)    <----------DOF2
 
attatactctctagcttcgattaaaaagtcccaaagcaaagcgaattgcttgctactacccaaaatctcaaccaaaatgtgataactttccaagctatgt  19613800
                                            <---------GLK1(1)
                                           ---------->DOF2
                                          <------ZmHOX2a(1)
            <---------YAB1               --------->ANAC58
        <---------GLK1(2)                --------->ANAC58
   --------->TOE1(2)                  <---------At4g35610                                          <
 <---------ARR11(3)                   --------->At4g35610                                         <-
 <---------ARR14(2)           --------->ARR14(2)    --------->ARR11(3)                           <--
 --------->GLK1(2)            --------->GLK1(2)     <---------GLK1(2)                      ---------
 --------->ARR11(3)           <---------ARR14(2)    <---------ARR11(3)                    <---------TOE2(3)
 --------->ARR14(2)          <---------GLK1(2)    ----------->ARR10                ----------->ARR10
 
gcaaaatctgggattcttcttgcccatagaaagaatctgtgagcaggaaagccgagatttttgcagcgtttcaatacttgttcgactagatttgacgaaa  19613900
                                                                                     --------->CCA1(2)
                                                                                     <------ZmHOX2a(2)
                                                                                    <---------AGP1
                                                                                    --------->AGP1
                                                                                    <---------ARR14(2)
                                                                                    --------->ARR11(3)
                                                                        ------>ZmHOX2a(2)
                                                                       <------ZmHOX2a(2)
                                                                      --------->ARR14(2)
                                             <---------LBD16          <---------ARR14(2)
                                           --------->ARR14(2)         <---------ARR11(3)
                                           <---------ARR14(2)         <---------ARR14(3)
                                        <---------TOE1(3)   ==================HOX2a_HOX2a          -
                                        <---------TOE2(3)   ================================HOX2a_HOX2a
                                    <----------DOF2         =================================HOX2a_HOX2a
                                ------>ZmHOX2a(2)           ===================HOX2a_HOX2a         <
                                ===================================HOX2a_HOX2a      --------->ARR14(2)
                               ====================================HOX2a_HOX2a      <---------ARR11(3)
                              --------->ARR11(3)            <------ZmHOX2a(1)    <---------------AGL15
                              <---------ARR14(2)  --------->ABI4(2)   --------->ARR11(3)         <--
                              <---------ARR11(3)  <---------MYB46(3)  --------->ARR14(3)      <-----
---------LBD16                --------->ARR14(2) --------->ALFIN1--------->LBD16 --------------->AGL15
--------LBD16              --------->HSFB2a(2)   <---------AtMYB61   <---------GLK1(1)       <------
-------LBD16----------->RAV1(1)<------ZmHOX2a(2)<---------MYB52(1)   --------->GLK1(1)------>ZmHOX2a(2)
>ANAC46    <----------ID1  <---------HSFB2a(2) --------->LBD16 <---------LBD16  <-----------------AGL2
 
ctcggggagagtaagcgacaagagtgtgttcgagatcgtctttagggttccggtggtcgctcaggacgcgggagatctcgtttactagatctggtgatgg  19614000
            <---------ZAT14
            --------->REM1(2)
    --------->REM1(2)              <---------TOE2(3)
 <---------ANAC46               <---------WOX13(1)  ---------->DOF2
 ------>ZmHOX2a(2)            -------->HAHB4     ----------->GT1
-------->ARR14(2)             --------->ATHB12   <------MYB83
---------ARR14(2)            --------->ICU4      <------MYB46(1)
-------MYB46(3)    ----------->ARR10  --------->CCA1(2)                                          ---
----MYB46(3)--------->ZAT14  <---------ATHB12   --------->MYB59                            ---------
---AtMYB61 --------->ALFIN1  <---------YAB1     --------->MYB46(2)                  --------->ARR14(2)
 
tggatcgtgtagaagtgtagagaagatgcgaaatgattgagatttaggggtttggtaaagagcgcgaacaagagaagagactgttcgaatcgccattcaa  19614100
                                                              --------->ZAT18
                                                              <---------ZAT18
                                                            <---------At4g35610
                                                            --------->PCF2
                                                            --------->At4g35610
                                   <------------CBF  <---------YAB1              <---------ALFIN1
                               --------->ANAC58    --------->YAB1             --------->PCF2
---->GAMYB                     --------->ANAC58    <---------AHL20(2)  <---------AHL20(2)
>AtLEC2            *TSS      ---------->DOF2     <-----------TBP       --------->AHL20(2)<---------AHL20(2)
 
cagagcaatggagccaatttgagttttaaacacaaagccattggatttgtatatttataagtgagcccacttaatttatcaggcccacttaatttatcgc  19614200
                                    ---------->DOF2
                                --------->MYB59
                               <-------TEIL
                              --------->GLK1(2)
                              --------->CCA1(2)
                              --------->ARR14(1)
                             <---------ARR14(2)
                             --------->ARR11(1)
                             <---------GLK1(2)      ----------->GT1
                           <---------YAB1       <---------ANAC58             ---------->DOF2
                           <---------TOE1(3) <---------RAP2.6(2)       <-------TEIL
                           ----------->ARR10 <---------DEAR3(1)     --------->At4g35610
                   <---------ARR14(2)       --------->SPL7          <---------At4g35610
                   --------->ARR14(2)    --------->LBD16      <------ZmHOX2a(2)
             --------->ATHB12--------->ARR14(2) <---------ANAC58  <-----------RAV1(2)
            <-------TEIL   <---------TOE2(3)--------->RAP2.6(3)------>ZmHOX2a(2)             -------
          --------->YAB1<---------MYB52(1)----------->HVH21  --------->ARR11(3)   --------->CCA1(2)
     <------ZmHOX2a(2)----------->GT1   <---------LBD16      <---------ARR11(3)  <----------ID1
     ------------>CBF------>ZmHOX2a(2) <---------LBD16   ---------->DOF2    --------->AHL20(2) -----
 
aagattagatcaatattcatgggatcggttaagattcggtaaaccgggacggcttgagttaaaagatcgccagatgcaaataaagagacaagagaagaaa  19614300
                                                                                    <---------ARR14(2)
                     --------->ANAC46                                       <---------ARR14(2) -----
      <---------TOE2(3)                                                     --------->ARR14(2) <----
--->DOF2 *TSS   <----------DOF2                     ---------->DOF2 <-----------GT1 --------->ARR14(2)
------>GT1  <---------RAP2.6(2)                ------->GAMYB    <----------DOF2     <---------GLK1(2)
 
gaaaattttgatgtttcggcttctacgaagcatttgcaaaacttgtccaactgaagaaagcttgagacttttcactgggtatttgcagtttctcactgaa  19614400
                                                                                                <---
                                                       <----------DOF2                        <-----
                                       --------->HSFC1(2)               <---------ANAC58      <-----
---->GLK1(1)                 <-------TEIL<----------DOF2                <---------ANAC58      <-----
-----GLK1(1)                <--------P <---------HSFC1(2)  <----------DOF2      ---------->DOF2<----
 
atccctaaaacttgggtcttgaagtatataggtagatgtcgaagcttttactcattttctttcttttttggtgtttcttacttcaaagtttctatttgcg  19614500
                                                                              ------->GAMYB
                                                                              --------->TOE2(3)
                                                                             --------->MYB46(3)
                                                                          ------>ZmHOX2a(1)
                                                                         <---------MYB59
                                                                  <---------AHL20(2)
                                                                  <-----------GT1
                                       -------->P             <---------AHL20(2)
                                <---------At4g35610          <---------AHL20(1)              <------
  <---------ANAC46              --------->At4g35610          --------->AHL20(1)         <---------At4g35610
------MYB52(1)                  --------->ZAT2               <---------AHL20(2)         <---------HSFC1(2)
----ANAC58                      <---------ZAT2               --------->AHL20(2)         --------->At4g35610
----ANAC46                  <-----------HVH21        <----------DOF2 <----------DOF2    --------->HSFC1(2)
----ANAC58              <------ZmHOX2a(2)--------->HSFB2a(2) --------->ARR11(3)        --------->GLK1(2)
---GAMYB               --------->ARR11(3)<---------HSFB2a(2) <---------ARR11(3)   ---------->DOF2
 
ttgttttgtgttttgcagagaagatggatcatgtcagcagtctaccagaaggtgttctttgcaatatattttctttcctaaccacaaaagaagctgcttt  19614600
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AGI:  At1g52640.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G77360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62764.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 19612399    to: 19614120    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g52650.1   
Description:  Identical to F-box/LRR-repeat protein At1g52650 [Arabidopsis Thaliana] (GB:Q9SSR7;GB:Q681K5); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G13960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63569.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566)
Range:  from: 19614310    to: 19616262    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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