Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ------->GAMYB                                                                                  <---------MYB55(2)                                                                     <---------At4g35610                                                                     <---------ANAC58                                                                     <---------ANAC46                                                                     <---------bZIP60(2)                                                                     <---------ANAC58           -----         ------->GAMYB                                               --------->At4g35610    <-------- --------ARR11(3)      ----------->GT1                   --------->ZAT18        <-----------GT1 <---- ------->ARR11(3)     --------->DAG2              --------->CCA1(2)<---------ZAT14--------->MYB46(3) ------->GLK1(2)     ---------->DOF2       --------->YAB1<---------ZAT18    ------>ZmHOX2a(1)   -----   aaatctttcaacagcatagaactaaaagtgaaaacttagaataaatgataagagacgagtgcatacgagtgaggtgtccttgtaaccaccatttgcaagg  19611900                      --------->ANAC58          <---------At4g35610                      --------->ANAC58       ---------->DOF2              --------->ANAC55(2)                      --------->ANAC46      ----------->HVH21             <---------ANAC58                    --------->ZAT6        ----------->RAV1(2)             <---------ANAC58 ---->ARR14(3)      <---------ALFIN1      <---------LBD16               <-----------GT1 -AtLEC2         --------->ZAT14      <---------ARR14(2)   --------->ANAC58       <---------TOE2(3) -----ARR11(3)   <---------REM1(2)    --------->ARR14(2)   --------->ANAC58========================== ---->ARR11(3)------>ZmHOX2a(1)   --------->At4g35610      --------->ANAC46--------------->AGL15   tctccattccattatcctcttcacactccatatatcagaagaacccctgaagcagagaaacacacaattcaattttacttgattaagtttctatatgatc  19612000                                                                                                   --                                                                                           --------->At4g35610                                                                                          <---------ARR14(2)                                  --------->CCA1(2)                                       --------->GLK1(2)                               ----------->HVH21                                         <---------GLK1(2)              --------------->AGL15                                                   --------->ANAC58              <---------------AGL15                                                 --------->MYB52(1)    ----------->HVH21      ------->GAMYB                    <---------ICU4   --------->LBD16  -------  <---------At4g35610    <---------At5g28300      ---------->DOF2          <---------LBD16--------->ARR14(2)  --------->At4g35610   --------->ARR14(2)        --------->ZAT14         ------->TEIL--------->ANAC58 =============================MADS_MADS        ----------->GT1   --------->ZAT6    <---------ARR14(2)   aaacatctgactacttctcaatacagtaaccgtgtgatacgattcgaagcagtaaagacgaatacttacactgatgaaccggaaggaaacggaatctgca  19612100                                                                                        <---------ICU4                                                                                        --------->ATHB12                                                                                        <--------HAHB4                                                                                     --------->WOX13(1)                                                                                  <------ZmHOX2a(2)          <---------ANAC46                                                        --------->CCA1(2)          <---------O2                                                           <---------ARR14(2)         <------NtERF2                                                           <---------ARR11(3)         --------->ATERF1(1)                                                     --------->ARR11(3)        ------>NtERF2                                                            --------->ARR14(2)       --------->ETT(2)                                                          --------->AGP1   <--       ----------->HVH21                                                        --------->GLK1(1) <--       <---------DEAR3(1)                                                       <---------GLK1(1)----    --------->ALFIN1              <------ZmHOX2a(1)                          --------->LBD16     <---  <-----------RAV1(1)      <----------ID1                                  <---------LBD16   -------- ------->GLK1(2)         --------->MYB52(1)   ----------->GT1            <-----------GT1--------->YAB1 -->At4g35610         --------->YAB1        ---------->DOF2         <---------MYB46(3) <---------ATHB12   gaatatgtggcgacggggatagaagaataacgacgaggagaagagagaaagttaagacgaagacgaacagtggtttcaccggagatccaatcatttgatt  19612200                                                                              <---------ORA47(2)                                                    ---------->DOF2           <---------DEAR3(2)                                                  --------->YAB1              <---------ATERF1(1)                                               <---------------AGL15         <---------DREB2C(2)                                               --------------->AGL15         <---------At1g77200                                              <-----------------AGL3        <------NtERF2                                              ----------------->AGL3        *TSS                                        <---------AGP1                    <---------DEAR3(1)                                        --------->AGP1                  <-----------HVH21                                        --------->ARR14(2)       --------->ANAC58     <---------AHL20(2)                 <---------ARR14(2)       --------->ANAC46         <----------   <---------YAB1                       <---------ARR11(3)       --------->ANAC58        --------->AHL20(2) ----MYB46(1)              --------->DAG2 ------>ZmHOX2a(2)    --------->ANAC58      --------->ICU4 ----MYB83                ---------->DOF2<------ZmHOX2a(2)     --------->ANAC58   <------NtERF2 ----->MYB59        <---------GLK1(2)   <-----------ARR10      <---------ALFIN1  ------>NtERF2 ------TOE2(3)      --------->ARR14(2)  --------->ARR11(3)   <---------ALFIN1<---------DEAR3(1) ->ATHB12           <---------ARR14(2) <---------CCA1(2)   <---------ALFIN1<-----------HVH21        <   aggttatgaaattgcaacttcagatttgtaaagtgtctctcagatctatctataaaaagctccacacacactaccgtcgtcggtgccaaaattaactctg  19612300                                                     <---------HSFC1(2)                             -                                                     <---------HSFB2a(1)                           <-                                                     --------->HSFB2a(1)               --------->MYB52(1)                                                   <---------ARR14(2)                  ------>MYB83<-                                                --------->ANAC58                       ------>MYB46(1)                                                --------->ANAC58                     <---------MYB59<                                        --------->AHL20(2)                           --------->AtMYB61                               <------ZmHOX2a(1)--------->ANAC46                  <-----------GT1  -- -GT1                   <------ZmHOX2a(1)      <---------LBD16 --------->YAB1   <---------WOX13(1) -- -----------GT1----------->RAV1(1) ------------>CBF--------->ARR14(2)        <---------YAB1----------   tttcaccagagaagaaacaacacagaggaagaaggagaacaatataaaactcggaaccctctgaatcatcgagagggttttgattaaccaaaccggttga  19612400    <---------AHL20(2)   --------->AHL20(2)   <---------AHL20(2)  <---------YAB1 ------->ATHB1                                                                        ------->TEIL --------ATHB51       <-------TEIL                                     --------->ARR11(3) --------AHL20(2)    --------->CCA1(2)                                 <---------ARR14(3)       ----- ---------ICU4      --------->ARR14(2)                      <---------ZAT18        --------->ANAC55(2) ------->ICU4       <---------ARR14(2)                  <---------ICU4 --------->GLK1(2)--------->ZAT6 ------->AHL20(2) --------->LBD16                   --------->AHL20(2) <---------ARR11(3)       ----- ->GT1          <---------LBD16                     <---------AHL20(2) --------->ARR14(3)      <-----   aattattaatttccaattcccagatacacactctgtacattgttcttaaacaaattaaacattgcacatccaaaatcttgaattcatgtaactctaaatg  19612500                                                              <---------ICU4                                                        <---------ICU4                                                        --------->YAB1        <---------AHL20(2)                             <---------YAB1     --------->TOE2(3)                               --------->YAB1     ----------->GT1                                 <---------ICU4    ----------->GT1                                 <---------YAB1 ---->ATHB12     --------->KAN4(2)                --------->YAB1                  --------->ANAC46 --->HAHB4     ------->TEIL                     <---------ARR11(3)        <-----------GT1      ------ ----ATHB12 ----------->GT1        <----------DOF2<---------ICU4        <-----------GT1  --------->ARR14(2)   attcaaatgttaaaatgtatattctcatatagtgtctctttcaagctcaaaatcatcatcatcatcttcactattttcacttctacgtcccaatctcctt  19612600                       <---------ARR11(3)                       <---------ARR14(2)                       <---------ARR11(1)                                                           <                       --------->ARR14(2)                                                          --                       --------->ARR11(3)                                                          --                      <---------CCA1(2)                                                          ----                 --------->ANAC58                                                                ----                 --------->ANAC46                                                                ----                 --------->RAP2.6(2)                                                            -----                 --------->DREB2C(2)                                                            <----                 ------->GAMYB                                                                  -----                 --------->ANAC58       --------->ARR14(2)                                     ------                 --------->DEAR3(1)     <---------ARR11(3)                                     ------                <---------MYB55(2)      <---------ARR14(2)                                     ------                --------->DEAR3(2)------>MYB83                            --------->ANAC46   <-------          --------->At4g35610   <---------MYB59                ------>NtERF2             ---------->ID1          <---------At4g35610  --------->DEAR3(2)           <---------ANAC58      <-------TEIL------- >ZmHOX2a(1)    --------->MYB46(3)------>MYB46(1)           <---------ANAC58--------->ANAC46 --------   ctcttccctctcatctcaaccgccatatcttgaaccgaacaagaactgcttctctccatcttccctgccaaaacatccacaacatccatttgtccccaac  19612700        <---------ARR14(2)    <------------MYB.PH3(1)   -------->P  --------->MYB52(1) ---------MYB52(2) ---->MYB83 ---->MYB46(1) ----->DREB2C(2) ----->DEAR3(1) --->GAMYB ---->MYB46(3)                                                                  <---------HSFC1(2) -----MYB55(2)                                                     ---------->DOF2 ---->DEAR3(2)                                                 --------->At4g35610    ------>ZmHOX2a(1) >MYB46(1)                                                   <---------ICU4     --------->HSFC1(2) -->P   --------->ARR14(2) <---------MYB52(1)             --------->YAB1--------->ARR11(3) >MYB83<---------GLK1(2)--------->MYB46(3)                <---------ICU4<---------ARR14(2) --ALFIN1        <---------ARR11(3)                --------->REM1(1)    --------->ARR14(2) -->MYB52(1)------>ZmHOX2a(1)     --------->ARR14(2)     <---------ATHB12      --------->ANAC58 ->MYB46(3)--------->TOE2(3)      <---------ARR14(2)   --------->WOX13(1)      --------->ANAC58  <---   cgactaaccgattcctcaacatctcaaccgttgtcgaatacggtggtatcccttcatcaatcatcatctcaaagtatctacaagcttcctctaacttccc  19612800  Previous    Next  AGI:  At1g52630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G02250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62763.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) Range:  from: 19610003    to: 19612276    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g52640.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G77360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62764.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19612399    to: 19614120    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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