Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ANAC58                                      ----------->GT1              --------->CCA1(2)                                      --------->ANAC58           ----------->TBP                                    <--------P                 --------->AHL20(2)                                  <------MYB46(1)              <-----------TBP                                  ----------->GT1        ------>ZmHOX2a(1)                     ------                                <---------WOX13(1)     <---------ANAC46                    --------->AHL20(1)    <------ZmHOX2a(1)         --------->ATHB12      --------->GLK1(1)                      --------->ARR11(3) --------->At4g35610  --------->ARR11(3)           <---------ARR14(2)   ------->TEIL  ----------->GT1 -------At4g35610     <---------ARR11(3) *TSS--------->DAG2    <---------AHL20(2)   ----------->GT1 ------>At4g35610 ---------->DOF2 <------MYB83     --------->ARR14(2)  --------->ANAC46    <---------AHL20(1) -->ALFIN1<------ZmHOX2a(1)  <---------YAB1 ---------->DOF2  <-----------TBP  ---------->DOF2<-------   agcagaggaagaggagagagcaaagacatttttgattggtaagtaaaaaagcgtatttcctgtatttatatatgcgcctcgaaagagagagaaaatattg  19569000                      --------->AHL20(2)  --------->ARR11(3) <---------AHL20(2)              <---------ICU4        ----------->GT1     --------->AHL20(1)              --------->YAB1      <---------ANAC46      <---------AHL20(1)              -------->HAHB4  <------------CBF          <---------ARR11(3)             <---------ATHB12 >>>>>>>>>ARR1             --------->ARR11(3)       <---------MYB46(3)   <---------YAB1--------->GLK1(2)<---------AHL20(2) ----->GT1   --------->ICU4 <---------TOE2(3)<---------HSFB2a(2) -----CBF   <---------TOE2(3) >>>>>>>>>ARR2  --------->HSFB2a(2)    --------->AHL20(2)          <----   aaaaattagtggttaatgatgacataaattaagattgtgggtaaaatctagaaattgatatattttttttttatatatgctgttttataagctcataaat  19569100                             <-----------HVH21                          <---------ICU4                   --------->GLK1(2)                 <---------ANAC58                      --------->LBD16           <---------GLK1(1)     --------->YAB1   <-----------GT1                 <---------LBD16            --------->GLK1(1) -----ICU4       <---------ANAC58                    <---------LBD16      --------->ICU4   atcacattcacaagtttgtgcgttttactaatgtcatagactcatagatttcatttcagggaatctatgtaatgcaattttggatttcatttcatagcat  19569200                                                                                                    -                                                                                           <-------MYC2                                                                                           <-------PIF4                                                                                           ------->PIF4                                                                                           ------->MYC3                                                                                           ------->MYC2                                                                                           <-------MYC3                                                                                           <-------MYC4                                                                                           <-------PIF5                                                                                           ------->MYC4                                                                                           ------->PIF5                                                                                          <---------ANAC55(2)                                                                                         ------------                                                                                        <------------OsbHLH66                                                                                        <---------ALFIN1                                                    --------->YAB1           ------>NtERF2--------->ANAC55(2)                    <---------ANAC46     ----------->GT1                    --------->DEAR3(1) <-----                   ---------->ID1       ----------->GT1                 --------->SPL7 <---------At4g35610   tccctccgtttcagtgtaattgtcgtttaagtgtcttaagtgaaggaaaaacaaaaatgatatgtttaagtgcgaacgacgacgtttgcagcacgtgctt  19569300                                                                                             <-------                                                                                             --------                                                                                        --------->DEAR3(1)                                                                                    ----------->HVH21                                                                                   <---------ALFIN1                                                                                   --------->AtMYB61                                         ----------->GT1                          --------->bZIP60(2)     <---------ANAC46                    <------MYB46(1)                          --------->ANAC46  --------->TOE2(2)                      <---------MYB46(3)                     <---------ALFIN1 ------>TEIL                             <------MYB83                           --------->AtMYB61>>>> >OsbHLH66                           <-----------RAV1(1)              ----------->RAV1(1)<-----------HVH21 -----DOF2                   --------->ALFIN1             <-----------GT1 ---------->DOF2<-----------TGA1   tgaacctgtgtgtgaaaaccctaagcctaaggtgtctctatgttggtgaaaatgctagagtcaccagtcgagccccaaaagaccacctcaccgtcagaag  19569400                                                                     --------->LBD16           ------                                                                    <---------ANAC58           ------                                                                    <---------ANAC58         <-------                                                                    <---------ANAC46    ------>ZmHOX2a(2)                                                                <----------DOF2       <---------AGP1                    <----------DOF2                           <------ZmHOX2a(2)       <---------ARR14(2)                --------->MYB46(3)                           --------->ARR14(2)       --------->AGP1              --------->MYB52(1)                             <-----------ARR10        <-----------ARR10              ------>MYB83                                   <---------ARR11(3)       <---------ARR11(1)              ------>MYB46(1)                                --------->ARR11(3)       --------->ARR14(2)             --------->MYB55(1)                              <---------ARR11(1)       <---------ARR11(3)             ----------->HVH21         --------->ANAC58      <---------ARR14(2)      <---------ARR14(1)            --------->AtMYB61------------>CBF <------ZmHOX2a(2)------>ZmHOX2a(2)     <---------CCA1(2)            <---------MYB111(2)       --------->LBD16       <---------ARR14(1)      --------->LBD16            <---------MYB46(2)        <---------LBD16       <---------CCA1(2)      --------->HSFB2a(2)      <-----------GT1   ---------->DOF2--------->ANAC46   --------->ETT(1)      <---------SPL7------- ----------->GT1<------------MYB.PH3(1)--------->ANAC58 <-----------HVH21       <-----------HVH21 --At4g35610<---------MYB52(2)        *TSS   <---------ARR11(3)<---------HSFB2a(1)<---------LBD16 ->At4g35610<---------MYB111(1)     <---------LBD16 <---------LBD16 <---------ANAC55(1)<------ZmHOX2a(2) >>>>>TBF1  <---------MYB59----------->GT1   --------->ARR11(3)--------->HSFB2a(1)--------->SPL7  ---   aagaagttaaactacctaaccgctttcaaaggtcaatacccgcgcaagatcactctcgggtcggatctttccgtgtaagacccgtccggatctatcccgg  19569500  ============================HOX2a_HOX2a                       --------->LBD16                    <-  <---------ATHB12                                          -------->P                        <<<<<<<  <------ZmHOX2a(2)                                        <-----------GT1                ------>MYB46(1) ----->HVH21                                  <----------DOF2   <---------------------WRI1------>MYB83 --->LBD16             ------>ZmHOX2a(1)     <---------ANAC58 --------->TOE1(2)         <---------MYB59 --LBD16        <---------ZAT14              <---------ANAC58 <---------LBD16           --------->AtMYB61 -->LBD16<-----------GT1           --------->DAG2   --------->YAB1                   <---------ARR14(2) ------>DEAR3(2)--------->ZAT14   ---------->DOF2--------->YAB1--------->ANAC46     <------ZmHOX2a(1)   accgatcaatttcacgagtgttctccttcaatcgaataaagtcaagtgctttcatcaaaatttacccgcgaattgaagaaggaagaggaaccaaacctcc  19569600                                                                                         <---------GLK1(2)                                                                                         --------->ARR14(2)                                                                                     ------->TEIL                 <---------MYB52(1)     --------->ZAT6                            <---------YAB1     <---------ZAT14      <---------ARR11(3)                   <---------LBD16--------->ARR11(3) --------ATHB12 <---------At4g35610   <-----------GT1 <----------DOF2       --------->ICU4 <<<<<<<<<<LFY  <-------GAMYB ------->TEIL          ------>ZmHOX2a(1)       <---------YAB1   aatggagagaagtgagtccgttgatgaagatgtatgtgtttaactctaaaactcctcttttcaattctggattttgtgaagattatgaatcgattcgcac  19569700                                         --------->YAB1                                        <---------YAB1                                      --------->YAB1                     <------------------------ANAC81 --------->At4g35610          ----------->GT1              <-----------GT1    <--------P          <---------At4g35610   --------------->AGL15           ----------->GT1      <-------GAMYB        <---------ZAT2       --------->TOE2(3)        --------->ICU4    --------->ATHB12 <---------YAB1 ------>ZmHOX2a(1)<---------------AGL15   aagggttgtgatgatgttacatttgatttcattgggttgattatcatttttgttcagctccttcacaagtttgatgcctcaattgagtaaatagggtttg  19569800                                                                                                   --                                                                                                 <---                                                                                                 <---                                                                                             <-------                                                                                   ==================                                         --------->At4g35610                       ------>ZmHOX2a(2)<                                         <---------At4g35610                 --------->CCA1(2)<------                           <-----------GT1                          <---------ANAC58         <-------                 <----------DOF2     --------->ANAC46               <---------ANAC46         --------                 <---------DAG2      --------->ANAC58               <---------ANAC58        <--------     ---------->DOF2      <---------YAB1--------->GLK1(2)          <-------TEIL   >>>>>>>>>>>>>>>>>LFY    --------->YAB1     <---------YAB1--------->ANAC58     <----------ID1---------->DOF2 <-----------HVH21   ctagaatcaaagtttatagctttttgttattacaggtccaagcatctgcatatttagagaacgacgaggttcgtgaaagagatgatccaatgtcagatac  19569900  Previous    Next  AGI:  At1g52510.1    Description:  hydrolase, alpha/beta fold family protein. similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G12830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62689.1); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase-like; (InterPro:IPR000639) Range:  from: 19565179    to: 19568941    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g52520.1    Description:  FRS6 (FAR1-related sequence 6); zinc ion binding. similar to FRS8 (FAR1-related sequence 8), zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G80010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62693.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62694.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75288.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1 (InterPro:IPR004330) Range:  from: 19569438    to: 19572053    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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