Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->YAB1                                                      <---------------AtSPL8                 <-------                                                      --------------->AtSPL8         --------->GLK1(2)             <---------REM1(1)                        --------------->AtSPL3         ------->TEIL  <---------ZAT14 ----------->GT1                 <---------YAB1          <------ZmHOX2a(2)<---------At4g35610 >TEIL      <---------TOE2(3) --------->CCA1(2)--------->GLK1(2)         <---------ARR11(3)--------->At4g35610   tgagaacagagtctaatgtagggtttatagagatttagggactcacaacattctgaatcgtactaacaacgtcgagatcagtcgatgaatctgagctttc  19458100                                                                     --------->SPL7                                                                  <---------ANAC58                                                               --------->KAN4(2)                                                             <------ZmHOX2a(2)                                                             <---------YAB1                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                 --------->MYB52(1)  ------->TEIL      <----------DOF2                <---------ANAC46   ---------->DOF2 ---DOF2                <---------At4g35610    --------->ARR11(3) <---------ANAC58   tccactagctttcaccatcagactgatgctgctagggtttcgagtaagagataatggagaaagatcattcgtacctcgagttagagaaaatgggagtttt  19458200                                                                                      ---------->DOF2                                                                                   --------->AHL20(2)                                                       <---------HSFB2a(2)     --------->AHL20(2)                                                ---------->DOF2                <---------AHL20(2)                <---------GLK1(2)        <---------ANAC46                <----------DOF2   tgaatcgatgtgagattggattttctctgtgtgagtaacaatggcgaaggcaaagttgcagaaattgaagccattctttaaaaaaataaaaagaacagaa  19458300                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ===                                                                                                  >>>                                                                                                  <--                                                                                                  ---                                                                                         <-----------GT1                   <---------ARR11(3)                                                    --------->YAB1                   --------->ARR11(3)                                                ================            <----------DOF2                                                          <----------DOF2  <---------AHL20(2)                                                           --------->TOE2(3)  ---  --------->AHL20(1)   <---------YAB1                                          <---------DAG2     <--  --------->AHL20(2)--------->GLK1(2)                             *TSS  <---------ZAT6 <-----------TBP --------->AHL20(2)<---------GLK1(2)                            <---------TOE2(3)<---------CCA1(2)---   caaaaaaattgaaactttagagattttgattcgattttggagacagagacgaagaaatttttggttatggattagagatagccttatctttttataatcc  19458400                                                      <-------MYC3                                                      ------->MYC3                                                      ------->MYC2                                                      <-------PIF5                                                      ------->MYC4                                                      <-------MYC2                                                      ------->PIF5                                                      <-------MYC4                                                     <---------TGA1a                                                     --------->TGA1a                                                     <---------O2                                                     --------->O2         --------->TOE2(3)                           --------->bZIP60(2)     <---------GLK1(1)                               <<<<<<<<<<HY5     --------->GLK1(1)                               <---------bZIP60(2) ------MYC2                                          <---------PIF3(3) ----->MYC3                                          --------->PIF3(3) ----->MYC2                                          >>>>>>>>>>HY5 ------MYC3                                         ------>NtERF2 ----->MYC4                                        <---------ALFIN1 ------MYC4                                       ---------------->PIF3(2)                --------->GLK1(2) ------PIF5                                     --------->ANAC58     ------>ZmHOX2a(2)   <---------ARR11(3) ----->PIF5                                     --------->ANAC58    <------ZmHOX2a(2)    <---------GLK1(2) ------>ANAC46                            ------->GAMYB--------->ALFIN1                  --------->ARR11(3) -------PIF3(3)                           =====================MYC_MYB--------->WOX13(1) --------->ARR14(2) ========================================bZIP_DOF<-----------------PIF3(1)               <---------ARR14(2) >>>>>>>HY5                             --------->ANAC58           --------->AGP1       <---------HSFB2a(1) -------TGA1a                 ---------->DOF2<---------ARR14(2)    <---------AGP1 <---------ZAT14  <- ------>PIF3(3)               =================================bZIP_DOF       --------->ATHB12     -- =======bZIP_DOF        <---------CCA1(2) ------------>CBF         --------->ARR14(2)   --------->HSFC1(2) ------>O2       <---------ANAC58       --------->ANAC58           <---------ARR11(3)   --------->HSFB2a(1) -------O2------>ZmHOX2a(1)--------->TOE2(3) --------->ARR14(2)    --------->ARR11(3)   <---------HSFC1(2) ------>TGA1a    <---------ANAC58--------->YAB1 --------->ANAC46   <---------ARR14(2)  ----------->ARR10   acgtggcatttcctaagtggcatatcaaatctcaaagatgacaacccaattcgccacgtggcagaacaagatctatcaaatgagtgaagaagattctcca  19458500                                                                                                >>>>>                                                                                                -----                                                                                                >>>>>                                                                                              <------                                                                                             <-------                                                                                             xxxxxxxx                                                                                             --------                                                                                            ---------                                                                                            <------NtERF2                                                                                            ---------                                                                                            ---------                                                                                           ------>NtERF2                                                                                           <---------ATERF1(1)                                                                                           --------->ABI4(1)                                                                                          --------->ANAC46                                                                                          --------->RRTF1(3)                                                                                          --------->RAP2.3(3)                                                                                          --------->RAP2.3(2)                                                                                          -----------                                                                                         --------->ORA47(2)                                                                                         --------->ATERF1(1)                                                                                         --------->DEAR4(2)                                                                                    --------->AtMYB61                                                                                    ------->GAMYB                                                                                   --------->MYB46(3)                       <-----------------AGL1                              <----------DOF2<---------DEAR3(1)               <<<<<<<<<GATA-2            --------->ANAC46               <------NtERF2   --------->ERF1               <<<<<<<<<GATA-1       ------->GAMYB ---------->DOF2     <---------RAP2.6(2)--------->DEAR3(1)             --------->WOX13(1)     --------->MYB46(3)                 <---------ANAC58  --------->RAP2.3(1)     *TSS --------->TOE2(3) <----------DOF2     ----------->RAV1(1)    <---------ANAC46 <---------ATERF1(1) --------ZAT14 <<<<<<<<<GATA-4      <---------MYB52(2)                 <---------ANAC58--------->DEAR3(1) ------->ZAT14 <<<<<<<<<GATA-3    ----------->RAV1(1)           <-----------GT1    <---------MYB55(2)   ctatacaaattacatcaatccactcacttactttggcaacaaacaaacaacaacaaagagagaaattaacatggcgtcttttgcaaccatcgccgccgta  19458600             ----------->HVH21        --------->RAP2.6(2)        --------->RAP2.3(2)        --------->ATERF1(2)        <---------ATERF1(2)       --------->ATERF1(1)       --------->RAP2.3(1)      --------->At4g35610      <---------At4g35610     <-----------RAV1(1)                         ----------->ARR10   ----------->RAV1(2)                       --------->ZAT2 >>>>SPL4   <-----------HVH21                --------->At4g35610 ---->SPL7<------NtERF2                      <---------ZAT2 >>>>SPL7------>NtERF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---SPL7--------->DEAR3(1)                   <---------At4g35610 --ANAC46<---------RAP2.6(3)                <-----------ARR10 xxxxxxxxxxxxx>smallRNA(le3)               <------NtERF2 ->DEAR3(1) --------->At5g28300           --------->LBD16                ---------->DOF2       <----- >RAP2.3(1) --------->LBD16    --------->At4g35610 --------->ARR11(3)--------->ANAC58    <---------ARR14(2) >ATERF1(1)<---------ANAC46  <--------P  --------->ETT(1)            --------->ANAC58    --------->ARR14(2) ------>AtSPL3     <------ZmHOX2a(1)    <---------LBD16        --------->HSFB2a(1)      ------>MYB46(1) ------->SPL14 ---------->DOF2 <---------At4g35610 <---------ARR11(3)--------->ANAC46   ------>MYB83-   caaccttctgccgccgtgaaaggacttggaggtagctctcttgccggagctaagctcttcatcaaaccttctcgccaaagcttcaaaaccaaatccacca  19458700                                                                                                    <                                                                                              -------                                                                                       --------->REM1(2)                                                          <---------TOE2(3)            --------->ZAT14                                                   <------MYB46(1)                     <---------ZAT14                                                <---------ARR14(2)             <---------WOX13(1)   <                                                --------->ARR14(2)            >>>>>>>>>ARR2 <--------            <----------DOF2                    --------->ATHB12              --------->ATHB12 <------       ---------->DOF2                         <------ZmHOX2a(1)      <-----------GT1 <---------ANAC46  ----------->GT1                             <---------YAB1 ---------->DOF2<---------YAB1  <-------- --------->DAG2         <---------GLK1(2)--------->YAB1  ---------->DOF2 <----------DOF2   <---------AGP1 ------RAV1(2)     >>>>>>>>>SARD1<---------WOX13(1)----------->GT1 ----------->GT1<---------ANAC58<-- --------->DOF2    >>>>>>>>>CBP60g----------->HVH21<------MYB83  <------ZmHOX2a(1)<---------ANAC58<--   ggtaaagtttaaagctttgaaatttggaatcttggattgacattgatgaggattggtattaaagaaaggatgttacttttgattgtttgtgtagagctgg  19458800       <------NtERF2     <---------RAP2.6(2)     <---------ANAC46   <---------MYB46(3)                                                                 ===============  --------->ALFIN1                                                                    ===============  <---------AtMYB61                                         ----------->RAV1(1)       ------>ZmHOX2a(2) -----------RAV1(1)                                        --------->ANAC46         <---------ARR14(2) -->ALFIN1                                     --------->ARR11(3)                   <---------AGP1 ---------ANAC46                               --------->ARR11(1)                   --------->ARR14(2) -At4g35610                                    <---------ARR11(3)              <---------AtLEC2 -----RAV1(1)                 <---------ARR14(2)--------->CCA1(2)<------ZmHOX2a(1)  ------->TEIL -ZAT2<---------MYB46(3)      <---------ZAT14  <---------ARR14(2)<<<<<<<<<<<<<<<<<LFY<---------At4g35610 -------ZAT14          ---------->DOF2         --------->ARR14(2)============================HOX2a_HOX2a -------At4g35610 <----------ID1  <----------DOF2        --------->ZAT6    <---------ANAC46     -----   tgctgtggtggctaagtatggagacaaaagtgtatactttgatttagaagatttgggtaacacaacaggacaatgggatgtgtatggatctgatgctcct  19458900            --------->TGA1a            ======================================bZIP_DOF            --------->O2           ------>MYB83                <----------DOF2           ------>MYB46(1)<---------ZAT14          <---------ALFIN1--------->ZAT18     ------>ZmHOX2a(2)         ------->GAMYB    --------->ZAT14    <------ZmHOX2a(2)         =============MYC_MYB       --------->ARR11(3)       --------->ANAC46   <---------ZAT18   --------->AGP1                             <---------ANAC58      <-----------GT1    <-----------GT1    <---------ARR11(3)                         <---------ANAC46  ------>ZmHOX2a(1)   <---------------AtSPL8<---------AGP1                        <-----------RAV1(1) ========HOX2a_HOX2a  --------------->AtSPL8--------->ARR11(3)                 --------->ICU4       < ==HOX2a_HOX2a  <---------TOE1(3)   <---------ARR11(3)                      <---------YAB1          - ->ZmHOX2a(1)  <-----------RAV1(2) <---------CCA1(2)                    <----------DOF2<---------ANAC58   tctccttataacccacttcaggtttttgtacactcttaaatctttagatctatatgcttcttcaaattctaagactttgtgattatgttgcttgcagagc  19459000  Previous    Next  AGI:  At1g52220.1    Description:  similar to PSAP/PSI-P/PTAC8/TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) [Arabidopsis thaliana] (TAIR:AT2G46820.2); similar to PSAP/PSI-P/PTAC8/TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA), DNA binding [Arabidopsis thaliana] (TAIR:AT2G46820.1); similar to unknown [Populus trichocarpa] (GB:ABK95860.1) Range:  from: 19457238    to: 19458366    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g52230.1    Description:  PSAH-2/PSAH2/PSI-H (PHOTOSYSTEM I SUBUNIT H-2). Identical to Photosystem I reaction center subunit VI-2, chloroplast precursor (PSAH2) [Arabidopsis Thaliana] (GB:Q9SUI6); similar to PSAH-1 (photosystem I subunit H-1) [Arabidopsis thaliana] (TAIR:AT3G16140.1); similar to Photosystem I reaction center subunit VI, chloroplast precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GB:O04006); contains InterPro domain Photosystem I reaction centre subunit VI; (InterPro:IPR004928) Range:  from: 19458505    to: 19459337    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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