Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <-----------GT1                     ------>MYB46(1)          --------->AHL20(2)                     <---------ARR14(2)       <--------ATHB1                     --------->ARR14(2)       <---------AHL20(2)                     ------>MYB83             --------->ATHB51                ------>MYB83                  <---------ICU4                --------->MYB52(1)           <---------ATHB51                ------>MYB46(1)              <---------ATHB12             --------->YAB1      -------              <---------MYB46(2)             --------->ICU4              <---------ATHB12  --------->ANAC55(2)              --------->AtMYB61          <---------ZAT14  --------->AHL20(2)            <---------ARR14(2)              <---------MYB59            --------->ZAT14  <---------AHL20(2)            --------->ARR14(2)         --------->YAB1              <---------ALFIN1    --------->AHL20(2)       <---------TOE2(3)   acccaaaccaataagacctaacctatcttcagacttatcccactgcaataatttacaaatttaaaaaatgtccaaatcaaaactaaggcatatatgtaac  19458000                                                       --------->YAB1                                                      --------------->AtSPL8                 <-------                                                      <---------------AtSPL8         ------->TEIL             <---------REM1(1)                        --------------->AtSPL3         --------->GLK1(2)  <---------ZAT14 ----------->GT1                 <---------YAB1          <------ZmHOX2a(2)--------->At4g35610 >TEIL      <---------TOE2(3) --------->CCA1(2)--------->GLK1(2)         <---------ARR11(3)<---------At4g35610   tgagaacagagtctaatgtagggtttatagagatttagggactcacaacattctgaatcgtactaacaacgtcgagatcagtcgatgaatctgagctttc  19458100                                                                     ------->TEIL                                                                  <---------ANAC58                                                               --------->KAN4(2)                                                             <------ZmHOX2a(2)                                                             <---------YAB1                                                            <---------ARR11(3)                                                            --------->ARR11(3)                                                 --------->MYB52(1)  --------->SPL7      <----------DOF2                <---------ANAC46   ---------->DOF2 ---DOF2                <---------At4g35610    --------->ARR11(3) <---------ANAC58   tccactagctttcaccatcagactgatgctgctagggtttcgagtaagagataatggagaaagatcattcgtacctcgagttagagaaaatgggagtttt  19458200                                                                                      ---------->DOF2                                                                                   --------->AHL20(2)                                                       <---------HSFB2a(2)     <---------AHL20(2)                                                ---------->DOF2                --------->AHL20(2)                <---------GLK1(2)        <---------ANAC46                <----------DOF2   tgaatcgatgtgagattggattttctctgtgtgagtaacaatggcgaaggcaaagttgcagaaattgaagccattctttaaaaaaataaaaagaacagaa  19458300                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  ===                                                                                                  ---                                                                                                  >>>                                                                                                  ---                                                                                                  <--                                                                                         --------->YAB1                   <---------GLK1(2)                                                     <-----------GT1                   <---------ARR11(3)                                                <----------DOF2            <----------DOF2                                                          ================  <---------AHL20(2)                                                           --------->TOE2(3)  <--  --------->AHL20(1)   <---------YAB1                                          <---------DAG2     ---  --------->AHL20(2)--------->GLK1(2)                             *TSS  <---------ZAT6 <-----------TBP --------->AHL20(2)--------->ARR11(3)                           <---------TOE2(3)<---------CCA1(2)---   caaaaaaattgaaactttagagattttgattcgattttggagacagagacgaagaaatttttggttatggattagagatagccttatctttttataatcc  19458400                                                      ------->MYC2                                                      <-------MYC2                                                      <-------PIF5                                                      ------->PIF5                                                      <-------MYC3                                                      ------->MYC4                                                      <-------MYC4                                                      ------->MYC3                                                     <---------TGA1a                                                     --------->PIF3(3)                                                     --------->O2                                                     <<<<<<<<<<HY5         --------->TOE2(3)                           --------->TGA1a     <---------GLK1(1)                               <---------O2     --------->GLK1(1)                               <---------PIF3(3) ------MYC4                                          >>>>>>>>>>HY5 ------PIF5                                          --------->bZIP60(2) ----->PIF5                                          <---------bZIP60(2) ----->MYC4                                         ------>NtERF2 ------MYC3                                        <---------ALFIN1 ----->MYC2                                       ---------------->PIF3(2)                --------->GLK1(2) ----->MYC3                                     --------->ANAC58     ------>ZmHOX2a(2)   <---------ARR14(2) ------MYC2                                     --------->ANAC46    <------ZmHOX2a(2)    --------->ARR14(2) -------O2                                ------------>CBF         --------->ARR11(3)    <---------GLK1(2) ========================================bZIP_DOF<-----------------PIF3(1)               <---------ARR11(3) ------>O2------>ZmHOX2a(1)               =====================MYC_MYB--------->WOX13(1) --------->ARR11(3) >>>>>>>HY5                             --------->ANAC58           --------->ARR14(2)   <---------HSFC1(2) ------>TGA1a                 ---------->DOF2<---------ARR14(2)    <---------ARR14(2)   --------->HSFC1(2) -------TGA1a                 =================================bZIP_DOF                 --------->HSFB2a(1) =======bZIP_DOF           --------->TOE2(3) --------->ARR14(2)    <---------ARR11(3)   <---------HSFB2a(1) -------PIF3(3)         <---------CCA1(2) ------->GAMYB--------->ALFIN1       --------->ATHB12     <- ------>PIF3(3)  <---------ANAC58       --------->ANAC58           --------->AGP1      ----------->ARR10 ------>ANAC46   <---------ANAC58--------->YAB1 --------->ANAC58   <---------AGP1 <---------ZAT14  --   acgtggcatttcctaagtggcatatcaaatctcaaagatgacaacccaattcgccacgtggcagaacaagatctatcaaatgagtgaagaagattctcca  19458500                                                                                                -----                                                                                                >>>>>                                                                                                >>>>>                                                                                              <------                                                                                             xxxxxxxx                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <------NtERF2                                                                                           ------>NtERF2                                                                                           <---------ATERF1(1)                                                                                           --------->ABI4(1)                                                                                          <---------DEAR3(1)                                                                                          --------->DEAR3(1)                                                                                          --------->ANAC46                                                                                          --------->RAP2.3(2)                                                                                          -----------                                                                                         --------->ORA47(2)                                                                                         --------->ERF1                                                                                         --------->DEAR4(2)                                                                                    --------->AtMYB61                                                                                    ------->GAMYB                                                                                   --------->MYB46(3)                       <-----------------AGL1                              <----------DOF2--------->RRTF1(3)               <<<<<<<<<GATA-3            --------->ANAC46               <------NtERF2   --------->ATERF1(1)               <<<<<<<<<GATA-1       ------->GAMYB ---------->DOF2     <---------RAP2.6(2)--------->RAP2.3(3)             --------->WOX13(1)     --------->MYB46(3)                 <---------ANAC46  --------->RAP2.3(1)     *TSS --------->TOE2(3) <----------DOF2     ----------->RAV1(1)    <---------ANAC58 <---------ATERF1(1) --------ZAT14 <<<<<<<<<GATA-2      <---------MYB52(2)                 <---------ANAC58--------->DEAR3(1) ------->ZAT14 <<<<<<<<<GATA-4    ----------->RAV1(1)           <-----------GT1    <---------MYB55(2)   ctatacaaattacatcaatccactcacttactttggcaacaaacaaacaacaacaaagagagaaattaacatggcgtcttttgcaaccatcgccgccgta  19458600             ----------->HVH21        --------->RAP2.3(2)        --------->ATERF1(2)        <---------ATERF1(2)        --------->DEAR3(1)       --------->ATERF1(1)       --------->RAP2.3(1)      <---------At4g35610      --------->At4g35610     <-----------RAV1(1)                         ----------->ARR10   ----------->RAV1(2)                       --------->At4g35610 ---->SPL7  <-----------HVH21                <---------ZAT2 >>>>SPL4 <------NtERF2                      --------->ZAT2 >>>>SPL7<---------RAP2.6(3)                 <---------At4g35610 ---SPL7--------->RAP2.6(2)                 <-----------ARR10 xxxxxxxxxxxxx>smallRNA(le3)               <------NtERF2 --ANAC46------>NtERF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ->DEAR3(1) --------->LBD16               --------->LBD16                ---------->DOF2       <----- >ATERF1(1) --------->At5g28300--------->At4g35610 <---------ARR11(3)--------->ANAC58    <---------ARR14(2) >RAP2.3(1)<---------ANAC46  <--------P  --------->ETT(1)            --------->ANAC46    --------->ARR14(2) ------>AtSPL3     <------ZmHOX2a(1)    <---------LBD16        --------->HSFB2a(1)      ------>MYB83- ------->SPL14 ---------->DOF2 <---------At4g35610 --------->ARR11(3)--------->ANAC58   ------>MYB46(1)   caaccttctgccgccgtgaaaggacttggaggtagctctcttgccggagctaagctcttcatcaaaccttctcgccaaagcttcaaaaccaaatccacca  19458700                                                                                                    <                                                                                              <------                                                                                       --------->REM1(2)                                                          <---------TOE2(3)            --------->ZAT14                                                   ----------->GT1                     <---------ZAT14                                                --------->ARR14(2)             <---------WOX13(1)   <                                                <---------ARR14(2)            >>>>>>>>>ARR2 <--------            <----------DOF2                    <------ZmHOX2a(1)             --------->ATHB12 -------       ---------->DOF2                         --------->ATHB12       <-----------GT1 <---------ANAC46  ----------->GT1                             <---------YAB1 ---------->DOF2<---------YAB1  <-------- --------->DAG2         <---------GLK1(2)--------->YAB1  ---------->DOF2 <----------DOF2   <---------AGP1 ------RAV1(2)     >>>>>>>>>CBP60g----------->HVH21<------MYB46(1) ----------->GT1<---------ANAC58<-- --------->DOF2    >>>>>>>>>SARD1<---------WOX13(1)<------MYB83  <------ZmHOX2a(1)<---------ANAC58<--   ggtaaagtttaaagctttgaaatttggaatcttggattgacattgatgaggattggtattaaagaaaggatgttacttttgattgtttgtgtagagctgg  19458800       <------NtERF2     <---------ANAC46     <---------RAP2.6(2)   <---------MYB46(3)                                                                 ------>ZmHOX2a(2)  <---------AtMYB61                                                                   ===============  --------->ALFIN1                                          ----------->RAV1(1)       =============== ---------ANAC46                                           --------->ANAC46         <---------ARR14(2) -----RAV1(1)                                  <---------ARR14(2)                   --------->ARR14(2) -----------RAV1(1)                            --------->ARR11(1)                   ------->TEIL -At4g35610                                    --------->ARR11(3)              <---------AtLEC2 -->ALFIN1                    <---------ARR14(2)--------->CCA1(2)<------ZmHOX2a(1)  <---------AGP1 -ZAT2<---------MYB46(3)      <---------ZAT14  <---------ARR11(3)<<<<<<<<<<<<<<<<<LFY<---------At4g35610 -------At4g35610      ---------->DOF2         --------->ARR14(2)============================HOX2a_HOX2a -------ZAT14     <----------ID1  <----------DOF2        --------->ZAT6    <---------ANAC46     -----   tgctgtggtggctaagtatggagacaaaagtgtatactttgatttagaagatttgggtaacacaacaggacaatgggatgtgtatggatctgatgctcct  19458900  Previous    Next  AGI:  At1g52220.1    Description:  similar to PSAP/PSI-P/PTAC8/TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) [Arabidopsis thaliana] (TAIR:AT2G46820.2); similar to PSAP/PSI-P/PTAC8/TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA), DNA binding [Arabidopsis thaliana] (TAIR:AT2G46820.1); similar to unknown [Populus trichocarpa] (GB:ABK95860.1) Range:  from: 19457238    to: 19458366    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g52230.1    Description:  PSAH-2/PSAH2/PSI-H (PHOTOSYSTEM I SUBUNIT H-2). Identical to Photosystem I reaction center subunit VI-2, chloroplast precursor (PSAH2) [Arabidopsis Thaliana] (GB:Q9SUI6); similar to PSAH-1 (photosystem I subunit H-1) [Arabidopsis thaliana] (TAIR:AT3G16140.1); similar to Photosystem I reaction center subunit VI, chloroplast precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GB:O04006); contains InterPro domain Photosystem I reaction centre subunit VI; (InterPro:IPR004928) Range:  from: 19458505    to: 19459337    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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