Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                        <---------YAB1                      ---------                                                       --------->AHL20(2)                  --------->AHL20(2)     --------->MYB52(2)        --------->ZAT2          --------->AHL20(1)                  <---------AHL20(2) <---------MYB46(3)       <---------At5g28300        <---------AHL20(1)                <---------YAB1 ---------ANAC46         <-----------GT1             --------->AHL20(1)            <----------DOF2 ------>ATHB12--------->ALFIN1 --------->At4g35610--------->AHL20(2)           <----------DOF2  <----   tgatgggtagtggccagtggggatgaattaccctgctaactcatgtataaaaaaaaatattatacacttatttctctgaaactttctttataaataattt  19433500                                 <---------YAB1         --------->AHL20(1)     <---------AHL20(2)         <---------AHL20(2)     --------->AHL20(2)         --------->AHL20(2)<---------YAB1                    <---------GLK1(2) ------YAB1                <---------AHL20(2)             <---------AHL20(2)                 <------- >AHL20(2)<---------AHL20(2)  <---------YAB1              --------->AHL20(2)                 -------- -------GT1               --------->AHL20(2)      --------->YAB1             <----------DOF2<--------   tcattttgaaatttaatagaaatttcatttttattaatataaacttgatttttcataaatataaattctcttattaagcctttatattcttgatatatct  19433600                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                 --------->YAB1                      ------>MYB46(1)                                            --------->AHL20(2)                      ------>MYB83                                               <---------AHL20(2)                    <---------MYB59                                             <---------------AGL15      --------->At5g28300                           --------->TOE2(3)        <---------AHL20(2) --ARR11(3)  <---------HSFB2a(2)      <------MYB83<-------TEIL               --------->AHL20(2) ->ARR11(3)  --------->HSFB2a(2)      <------MYB46(1)                       --------->AHL20(2)    <-- -CCA1(2) --------->ZAT6           <---------MYB52(1)                   <---------AHL20(2)     ------   tatttgactgtaactctagaaaccaaactaagagtccatttggttttaaaaatacattagaacattttctatgttttatttaattaaaatggaagtatca  19433700                                 <------------------------ANAC81                                <---------AHL20(2)                               <---------AHL20(1)                               --------->AHL20(2)        <-------TEIL           <---------AHL20(2)           <---------------------WRI1 --------->AHL20(2)           --------->ICU4     ------>ZmHOX2a(1)                              <---- -------ICU4             ----------->GT1         <----------DOF2    <-----------GT1    <------------- --->YAB1         --------->AHL20(2)     <-----------GT1 <---------AHL20(2)        <-----------------   aaattatacattcatttcaattacattgagtaatttttttttgtttccatcctttttagttaatcgatttttactatgaagactcgtttttttttttttt  19433800                <---------LBD16             --------->ARR14(2)             <---------ARR14(2)             <---------GLK1(2)         <---------LBD16       <----------DOF2                                                         ---------->DOF2      <---------ANAC58                                                        <---------AHL20(2)      <---------ANAC58                                                    <---------------AGL15    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->YAB1--------------->AGL15   <---------MYB52(1)   <---------YAB1                     <---------ATHB12   --------->AHL20(2) -----YAB1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -----------ANAC81  <XXXXXXXXXXXXXXXXXXXXMIR406 <---------At5g28300      ----------------->AGL3 -------ANAC81--------->GLK1(2)                <-----------GT1    --------->AHL20(2)   gattcgtttctttcggattctggattacaatagcattctatttgaatagttactgtctcaaatcaaaatttaagaactaataaaagaaaaatcaaatcta  19433900                                                                                                 ----                                                                                                 <---                                                                                              xxxxxxx                                                                                            xxxxxxxxx                                                                                        ------------>CBF                                                                                       <-----------GT1                                                                                 --------->AHL20(1)                                                                  --------->TOE1(3)  --------->YAB1                                                           <---------ARR11(3)    <---------AHL20(1)                                              *TSS---------->DOF2 --------->TOE2(3)  --------->AHL20(2)                 --------->YAB1              ----------->GT1  <-----------GT1    --------->AHL20(2)                 ----------->GT1           <---------YAB1  --------->ARR11(3)    <---------AHL20(2)<x <---------WOX13(1)<---------YAB1      <----------DOF2   --------->GLK1(2)   --------->AHL20(2)  xxxx   tagattgatatgtgctaaatcgtgataactaaaaattaagactttattagtaaaaagagaatatatacccttaaaccatgtaattaattatacaatgttt  19434000                                                                                                  xxx                                                                                                 xxxx                                                                                                xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                           <xxxxxxxxx                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                <xxxxxxxxxx                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              --------->ANAC58                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <xxxxxxxxxx                     <------MYB46(1)                                                      --------->ANAC58                     <------MYB83                                                      xxxxxxxxxxxxxx                    --------->MYB59                                                    <xxxxxxxxxxxxx                    <---------TOE2(3)                                                  <xxxxxxxxxxxxx                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <-----------HVH21          --------->TOE1(2)                                                           xxxxxxxxxxxxxxx         <---------ANAC58                                                            <xxxxxxxxxxxxxxx         <---------TGA1a                                                             <---------bZIP60(1)         <---------ANAC58                                                            xxxxxxxxxxxxxxxx         --------->TGA1a                                                             --------->ANAC46         <---------ANAC46                                                            xxxxxxxxxxxxxxxx       xxxxxxxxxxxxxxxx>smallRNA(s)                                                  <xxxxxxxxxxxxxxx      xxxxxxxxxxxxxxxx>smallRNA(s)    <---------AHL20(2)                             --------->bZIP60(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxx   <------------AtMYB77xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ================MYC_MYB <------------CBF                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->At5g28300     xxxxxxxxxxxxxxxxx ----->ZAT6      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ----------->GT1<---------HSFB2a(2) <xxxxxx --------GT1     <xxxxxxxxxxxxxxxxsmallRNA(i)           --------->MYB52(1)--------->HSFB2a(2) xxxxxxx xxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxx>smallRNA(le3)  <---------TOE2(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC46 xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <-----------TBP xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->TEIL    ----------->GT1<-----------GT1   <xxxxxxxxxxxxxxxx   cactaactgctacgtgcgaaattaggttccattgatgtatatatatgaacaagtggaaaaacggtatatttctctacgagaagtatcacatcacgccaaa  19434100                <---------LBD16               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxx>smallRNA(i)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxsmallRNA(s)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(si3)                                          <---------------AtSPL3 xxxxxxxxxxxxxxxxx>smallRNA(i2)                                          <---------------AtSPL8 xxxxxxxxxxxxxxxx>smallRNA(si3)                                        --------->MYB52(2) xxxxxxxsmallRNA(i)                                                 --------->TOE2(3) xxxxxxsmallRNA(s)                                                 --------->ANAC55(2) xxxxxxsmallRNA(i)--------->LBD16                                  <---------ANAC55(2) xxxxxxxx>smallRNA(se3)                                            --------->ANAC58 xxxxxxxxxxsmallRNA(i2)                                            --------->ANAC58         --------- xxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(se3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(i2)                                         --------->LBD16              --------->HSFB2a(2) xxxx>smallRNA(le3)  <---------ETT(2)                         --------->ANAC46             --------->LBD16 xxxxxxx>smallRNA(si3)                                       --------->LBD16              <---------LBD16 xxxxxxxxsmallRNA(si3)        --------->TOE2(3)              --------->HSFB2a(2)         <xxxxxxxxxxx xxxxxxx>smallRNA(le3)     --------->ARR14(2)                <------NtERF2           <---------ARR11(3) xxxxx>smallRNA(le3) --------->ETT(2)--------->AHL20(2)      <---------HSFB2a(2)<---------At4g35610 xxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2)     <---------LBD16     --------->At4g35610 xxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <--- xxxxxxx>smallRNA(si3)     <---------ARR14(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------HSFB2a(2) xxxxxxsmallRNA(l2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)-----   tagagcctaaacttcaactccggtctacatatccataaaataaatgttttcaacctatttgtccccgaaacgtaagttgtacagctaaatctccccgaat  19434200           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         --------->ARR11(3)           <------------MYB.PH3(1)         <---------ARR11(3)         --------->MYB52(1)      --------->HSFB2a(2)  <---------LBD16      <---------HSFB2a(2)<---------ARR14(2)  <---------TOE2(3)  <xxxxxxxxxxxxxxxxsmallRNA(i)      <-----------GT1                                 --------->DOF5.7(2) >LBD16  --------->AGP1  --------->ARR11(3)  <---------------AtSPL8                <----------DOF2 xxxxxxxxxsmallRNA(le3) <---------CCA1(2)    <---------------AtSPL3 ------->GAMYB  --------->TOE2(3) ------AHL20(2)       <---------CCA1(2)----------->GT1             --------->MYB46(3) ---->AHL20(2)  <-----------GT1  <----------DOF2                 <-----------GT1   --------->TOE1(3)   taatacttcgagatctattaacccatatatctgggttttaacggtttaatgtacagcaattcagttttaaccatcttaaaacaaactttaaccaaaacta  19434300                                        <---------TOE2(3)                                        <---------TOE1(3)                                       <---------DOF5.7(2)                                       --------->MYB52(1)                               <---------ATERF1(1)                               ------>NtERF2                              --------->RAP2.6(2)                              ----------->HVH21                              --------->DEAR3(1)                             --------->DEAR3(2)                          --------->DEAR3(1)                         --------->DEAR3(2)                        <---------ARR11(3)                         --------->MYB46(3)                        --------->ARR11(3)                   <-----------------AGL1                          --------->ARR14(2)                  -------->P --------->SPL7                       --------->GLK1(1)                 <-----------GT1       <-----------GT1  <---------------AGL15         --------->YAB1--------->ARR14(2)             <<<<<<<<<TBF1<---------ARR14(2)        <---------YAB1 <---------ARR14(2)   --------->CCA1(2)     <---------GLK1(1)   <----------DOF2   aaccaaaattatcaaaaattaacccgaaccggccgacccattaacgatacgacttcttcttcacatggaaatcttcttcacccattaacttttgcctcat  19434400  Previous    Next  AGI:  At1g52185.1    Description:  MIR406; miRNA Range:  from: 19433747    to: 19433946    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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