Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               xxxxxxxx                                            --------->MYB52(1)                              ------>ZmHOX2a(2)                                           <---------GLK1(1)                               <------ZmHOX2a(2)                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 --------->AGP1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ---------->DOF2                  <---------ARR14(3)               <---------SPL7             --------->ARR14(2)                              <---------ARR11(3)             <---------------AtSPL8       <---------ARR14(2)                              --------->ARR14(2)       --------->LBD16 <-------TEIL      <------ZmHOX2a(1)             --------->At5g28300<---------ARR14(2)     <---------LBD16xxxxxxxxxxxxxxxx>smallRNA(s)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     XXXXXXXXXXXXXXXXXXXX>MIR826  <---------LBD16    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR11(3)  ------->TEIL <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->HSFB2a(2)----------->GT1     --------->ARR14(3) --HVH21     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------HSFB2a(2)<---------MYB46(3)----------->ARR10   aatgtactccggtttagagtacgcgttcatcttcgtctcggaaggataccggtctagagcaaagagtcttggtggtaactcttcaactgtaagatcttca  19348400                                                 --------->MYB52(1)--------->ZAT14                                    --------->ARR14(2)             --------->ZAT18                 --                            ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxx       <---------ALFIN1   --------->AHL20(2) --------->ANAC58      <---------ZAT14  <---------GLK1(2)     ----------->RAV1(1)  --------->YAB1  <---------MYB52(1)   <---------------AtSPL8   <---------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ZAT6      <---------ANAC46      --------->LBD16<--- <------NtERF2   --------->MYB52(1) <---------ARR14(2)      <---------ZAT6       --------->HSFB2a(2) xxxxxxxx>smallRNA(i)     <---------AHL20(2) --------->ANAC58  ------->TEIL      <---------HSFB2a(2)   gtcggagcaacacttggactacctgcaattaaaagtcatatactgttaagcaaaccgaagtagtgtatgtacacagacattttccagattataactcaaa  19348500                                                          --------->ARR14(1)                                                          --------->GLK1(1)                                                          <---------GLK1(1)                                                          --------->CCA1(2)                                                         --------->ARR14(2)                                                         <---------ARR14(2)                      --------->GLK1(1)                  --------->ARR11(3)             --------->ARR14(2)                          --------->ARR11(1)            <------NtERF2                                <---------ARR11(3)           --------->LBD16                           ---------->DOF2          <---------ANAC46                          ------>ZmHOX2a(1)         <---------LBD16                         ---------->ID1 ------->YAB1<---------ARR14(2)                <---------ANAC58       <---------ETT(1)      --------- xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------ANAC58       <----------ID1  <----------DOF2 ------ARR11(3)       <---------GLK1(1)      <-----------GT1 ----------->GT1     <-----------GT1   atcatatttttggcggaaacagagatttccaattctacttctcaatttttcgtcctaaagatatgctaaattccgacaaattctaaccctttaatcaaat  19348600                               --------->MYB52(1)                              ------->GAMYB                             <---------MYB52(2)                             <---------MYB55(2)                             --------->MYB46(3)                            xxxxxxxxxxxxxxxx>smallRNA(i)                      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <-----------RAV1(1)                     ---------->DOF2                                   <----------DOF2                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58                  --------->ANAC58    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------HVH21                  --------->ANAC46 --------->At5g28300               <---------ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         ------>ZmHOX2a(1)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxsmallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ARR14(2)                       --               <xxxxxxxxxxxxxxxxsmallRNA(i)               <---------ARR14(2)                   ------            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->GLK1(2)    <xxxxxxxxxxxxxxxxsmallRNA(s)   <-     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <-----------ARR10  <---------MYB52(1)          <------   <-----------GT1--------->ANAC58----------->GT1 xxxxxxxxxxxxxxxx>smallRNA(s)               <------- <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(s)  --------->ARR14(2) >AHL20(2) <---------YAB1 <----------ID1      <---------GLK1(2)  <-------GAMYB        <---------ARR14(2)   aagctttacaattctgatacacccaaagacaacaaacggtaaattagagattctaacccagttcctccgttgcctttgtcgcagagcgttttctctgcgg  19348700                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                      <---------At4g35610      <---------DAG2                                      --------->At4g35610 --------->DOF5.7(2)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC46                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC58                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58                            xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           --------->LBD16     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->LBD16   ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <---------LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         ----------->RAV1(2)<---------LBD16<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --                       <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxsmallRNA(si3)---------->DOF2 ---                      ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------MYB52(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->LBD16     <---------GLK1(2)xxxxxxxxxxxxxxxxx>smallRNA(si3)<----------DOF2   *TSS  xxxxxxxxxxxxxx --------ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(i)<---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<--- ---ANAC46   --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --LBD16 <-----------GT1 <---------ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ggaaactcttaatacccgcttctccttccctggaccatgctgcttcctcgggacttcgtcgttagctttattcccagccatagctaaagatgctatctcg  19348800                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  <------NtERF2                                                  ----------->GT1                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ZAT14                                                 --------->LBD16                        <---------ZAT14                                                 ------>NtERF2                          --------->ZAT18                                                <---------LBD16                        <xxxxxxxxxxxxx                                                --------->LBD16                       --------->GLK1(1)                                              xxxxxxxxxxxxxxxx>smallRNA(i)            <---------GLK1(1)                                            --------->ATERF1(1)                     <xxxxxxxxxxxxxxxx     <-------TEIL          --------->At5g28300<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ALFIN1  <---------MYB46(3)<---------KAN4(2)     <---------ANAC58 --------->At5g28300 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC58----------->GT1     <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->LBD16 ------NtERF2     <------NtERF2      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->LBD16 ------->LBD16   --------->LBD16 xxxxxxxxxxxxxxxx>smallRNA(i)             <---------LBD16 ------>DEAR3(1)--------->LBD16 <----------DOF2<---------LBD16  <----------DOF2--------->ALFIN1 xxxxxxxxx>smallRNA(si3)  ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2) ------LBD16   <---------LBD16 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->LBD16   ccggaggttcaaatttcgccggaataaacagtaactttctcttggcttcgccgggaaaaacagtaactttcacttccccggatgtgggagttcagtggct  19348900             <---------ATHB12           ------>MYB83           ----------->RAV1(1)           ------>MYB46(1)         <---------MYB59         --------->MYB46(3)         <---------MYB55(2)        --------->ANAC46        --------->ANAC58        --------->ANAC58                                                <---------GLK1(2)       -------->P                                                     <---------YAB1      ------->GAMYB---------->DOF2                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------MYB111(2)                                  <---------ANAC58     --------->MYB46(3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <<<<<<<<     <---------MYB52(2)                        --------->ARR14(2) <----------DOF2            <-------     <---------MYB55(2)                        <---------ARR14(2) <---------DAG2            <-------GAMYB     <---------MYB46(2)                --------->ANAC58   <---------ANAC58          <xxxxxxxxxxxxxxxx     <---------MYB111(1)               --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)      --------->ANAC46 xxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <-----------ARR10 xxxxxxxsmallRNA(se3)    --------->MYB59   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------CCA1(2)   caattcaactacccaacaattcaaagttatgtcgaattttgaagcaatggatactgaatttcgtttcgctttctgattctctctcaaatctctccgttac  19349000                                                                                            ---------                                                                                           xxxxxxxxxx                                                                                          --------->MYB46(3)                                                                                          <xxxxxxxxxx                                                                                         ------>MYB83                                                                                         ------>MYB46(1)                                                                                       <xxxxxxxxxxxxx                                                                                      --------->MYB46(3)                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<------                                                       xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB52(1)                   <---------ANAC46                 xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <---------LBD16                  xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxx                 <-----------GT1                   <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <MYB98   ---------->ID1      <------------------------ANAC81    ------->TEIL <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --MYB52(1)  <---------MYB52(1)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxx xxxxxxxsmallRNA(fl3)  --------->GLK1(1)         ---------->ID1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   tctcttctcttcttcgttttttcgggtttcttcgtttcagtttttttttttgtctttttcaaaactgaaccgcatcaactaaaccgaaaccaactgctgt  19349100                                                                                        <xxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxx                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxx                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxx                                                <------MYB46(1)                      xxxxxxxxxxxxxxxx                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxx    <------MYB46(1)                     xxxxxxxxxxxxxxxx>smallRNA(i)                <------MYB46(1)    <------MYB83                       --------->ZAT14                  <---------LBD16xxxxxxxxxxxxxx   <---------AtMYB61                   <---------ZAT14      <--------HAHB4          <------MYB83   --------->MYB59                  --------->At4g35610     --------->ATHB51       --------->MYB59 >At4g35610                   --------->ANAC58  <------MYB83<---------ICU4         xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC58 --------->MYB59        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxsmallRNA(s)         <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxx xxxsmallRNA(i)--------->DOF5.7(2)  <---------At4g35610    <---------YAB1        <xxxxxxxxxxxxxxxxxxx xxx>smallRNA(si3)    --------->MYB52(1)<---------ALFIN1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxx ----DOF2 --------->ANAC46 --------->ARR14(2)<---------MYB52(1)  <---------TOE2(3) xxxxxxxxxxxxxxxxxx x>smallRNA(se3)<---------WRKY12   <-----------RAV1(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxx xxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ICU4 --------->LBD16<xxxxxxxxxxx   agggtttggtttacgtcgtcaacttaaccgatacgaactgctgcacagtttggtttgtgccattattaagttttcccagagtaatttggtccgaaattga  19349200           ----------->GT1           <---------ANAC55(2)   <----------ID1                                  --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <---------ARR11(3) ---------->DOF2                                   <---------ARR14(2) xxxxxxxxxxsmallRNA(le3)                           --------->GLK1(2) xxxxxxx>smallRNA(si3)                             <-----------ARR10 xxxxxxxxxsmallRNA(le3)                            --------->ARR14(2) xxxxxxx>smallRNA(le3)                             <---------ARR11(1) xxxxxxx>smallRNA(si3)                            <---------CCA1(2) xxxxxxx>smallRNA(s2)                             <---------ARR14(1) xxxxxx>smallRNA(le3)                       ---------->DOF2 xxxxxxxx>smallRNA(si3)                  --------->At5g28300 xxxxx>smallRNA(i2)                     ----------->GT1                <xxxxxxxxxxxxxxxxsmallRNA(i) xxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------ANAC46 xxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)--------->ANAC58  <---------ALFIN1 xxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxx>smallRNA(l2)                  --------->MYB52(1)     <---------ANAC58 xxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ANAC58              <---------AHL20(2) xxxxxxxxxxxsmallRNA(le3)     <----------DOF2 --------->ANAC58 <---------ZAT18    <----------DOF2 ---   atgaaaagacaaaacgtgaaaaccagttctcactttgacaaacggtgaaagcaaatcttttttcgtccacttctgtgaaaatttcttttgaaaaaattga  19349300  Previous    Next  AGI:  At1g52020.1    Description:  transposable element gene. pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At3g24390, At4g05280, At1g25886, At4g03300 Range:  from: 19343010    to: 19348781    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version