Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ARR11(3)                               <---------ARR11(3)                              <---------CCA1(1)                              --------->CCA1(1)                              <---------RVE1(1)                              <---------GLK1(1)                              --------->GLK1(1)                                                   <<<                              --------->RVE1(1)                                                  ---- <---------ANAC58            --------->ARR11(3)                                                 <---- <---------ANAC58            <---------ARR11(3)        --------->ZAT6                           ----- -------RAV1(1)            --------->ANAC58         --------->REM1(1)                <----------DOF2- >TOE2(3)                  --------->ANAC58  ---------->DOF2               ---------->DOF2      <---- -DAG2           <---------AtLEC2    --------->HSFB2a(2)          ----------->GT1  ------->TEIL <----   ggtgcttcccttcatgcttccatggccacaagatatcttcttgaactaaaagcttcaactctaaataagagtaacaaaaaagatgaactttgatgccaac  19205100      <---------ANAC58                                                                     --------->AHL20(2)      <---------ANAC58                                                                     --------->AHL20(1) <<<<<<<<<<<<<<LFY                                                                         <---------AHL20(2) --->GAMYB   ------>ZmHOX2a(1)                                        xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -----MYB111(2)                                                 <-----------GT1            <---------AHL20(1) ---->MYB46(3)                                             <----------DOF2              --------->YAB1 -------->ATHB12                                         ---------->ID1            --------->ICU4 -----MYB52(2)                                          <-----------GT1          ---------->DOF2 -----MYB55(2)                   ----------->GT1 <------------MYB.PH3(1)      --------->AtLEC2   aaacattggcttctcctattcttctactctgaaaaatgtcaaaacatggtaacagttttttcttttttacagagcctgccatgtaaagattaataaattg  19205200                                                                                               <-----                                                                                               ------                                                                                         --------->WRKY18(1)                                ----------->GT1                                         --------->At5g28300                    <---------AHL20(2)<-----------GT1                                  ----------->GT1          --------->ANAC58 --------->ANAC46              --------->CCA1(2)       ----------->HVH21          --------->ANAC58 --------->ANAC58             --------->ARR14(2)     <---------At4g35610      <-----------HVH21    --------->ANAC58             <---------GLK1(2)      --------->At4g35610     <---------ZAT6--------->AHL20(2)<---------YAB1     <---------ARR14(2)     <---------ZAT2 -------   ttatgcagtgtcaagcttctattaaatccaagaaatgttattactgcaaacaaaaacagatttgggccattgcaatgagagagctgaaacggtcaattta  19205300                            ----------->HVH21                           <-------TEIL                          --------->CCA1(2)                          --------->ARR14(1)                         --------->ARR14(2)                         <---------ARR14(2)                         --------->ARR11(1)                        --------->HSFC1(2)                        <---------HSFC1(2)                        --------->HSFB2a(1)                        <---------HSFB2a(1)                <---------ANAC58                       ----------->ARR10                 <---------ARR11(3)                         <                     <---------At4g35610                 --------->ARR11(3)            ------------>CBF ----AHL20(2)      <---------HSFB2a(2)                <---------HSFB2a(2)              <-------TEIL < --->AHL20(2)   <---------GLK1(1)                     --------->HSFB2a(2) --------->MYB52(1)  <------ -->AHL20(2)    --------->GLK1(1)           ----------->GT1<---------ANAC58      ---------->DOF2 <---   aacaaatcagattgagagatttcagaagattcgacgcataaacaaatgctaaaattcgagagcttgttaacatgtctaactgataaagattcaatttttc  19205400                                                <----------DOF2                                            <---------ANAC58                                            <---------ANAC58                                        <----------DOF2        <-----------GT1                <---------ICU4            <----------DOF2 ---------ANAC58                     <---------ARR11(3)       --------->ARR11(3) ---------ANAC58    <----------DOF2  --------->ARR11(3)       <-----------ARR10     --------->YAB1 <- -----GT1      <<<<<<<<<TBF1    <---------ARR11(3)           <---------CCA1(2)   --------->HSFB2a(2) -------DOF2<<<<<<<<<TBF1  <-------TEIL------>ZmHOX2a(2)  *TSS<---------ARR11(3) <---------HSFB2a(2)   tttcttgttttttcttcttcttctttagattcaagttctgatctttgcttctttgaaaatcacaaatcttttcttctgggtttctataaaaaacccattt  19205500                            <---------YAB1                       --------->ANAC46                <---------ICU4         <---------SPL7--------->LBD16        <---------ANAC58    --------->ICU4        <---------ANAC58  ---------->DOF2        <---------ANAC46--------->LBD16       <---------------AtSPL8       --------------->AtSPL3                 --------->ANAC58                <----------DOF2       --------------->AtSPL8--------->ATHB12 --------->ANAC58             --------->GLK1(2) ----------RAV1(1)    <---------LBD16   <---------ANAC46          ---------->DOF2      ---------->DOF2   tttgttgttgtcgtacaaacatttcccgtaaagattggatttttgtgtaagcatttgaagatagctaagaaagtgagaagcttttagatgaaagtgatgg  19205600                                                                                                   --                                                                                                  <--                                                                                           <---------At4g35610                                                                                      <---------ANAC58                                                                                      <---------ANAC46                                                                                      <---------RAP2.6(2)                                                                       <---------ZAT18<---------ANAC58                                                                       <---------At4g35610 --------->At4g35610                                                                 <---------ATHB12     <---------ANAC55(1)                    ---------->DOF2       --------->TOE2(3)     ------>MYB83       <---------MYB52(1)           <------ZmHOX2a(1)           <---------ALFIN1         ------>MYB46(1)<---------At5g28300<--      --------->ALFIN1          <-------TEIL                   --------->WOX13(1) <-------GAMYB   ---   taatggagatggaggaatgtgttaaagaaaatggttcatcaacacctaaatctagagtcacaaaccaatctagagctctcttaccgttgcgtctgcttca  19205700                                                                                       ------>ZmHOX2a(1)                                              --------->ZAT14                          <-----------RAV1(1)                                       <---------MYB46(3)                            ----------->RAV1(2)             <---------ANAC58        <-------GAMYB                                   ------>ZmHOX2a(2)             <---------ANAC46       <-----------RAV1(1)                            <---------ARR11(3)             <---------ANAC58    ------>ZmHOX2a(2)                                 --------->ARR14(2)    <---------MYB52(1)          --------->GLK1(1)                                  --------->ARR11(3) ------->GLK1(2)                <------ZmHOX2a(2)                                  <---------ARR14(2) -------ARR14(2)                <---------GLK1(1)                                  --------->AGP1 -------GLK1(2)                <---------ARR11(3)                                ----------->ARR10<-- ------>ARR14(2)               --------->ARR11(3)                       <-------TEIL<------ZmHOX2a(2)   gattctgttattgtttcttgttttgactcttgggatctctgttgttagtatacacatgatcaagtttttgaagattcaacgtttagatcctgtggctcca  19205800                             ----------->GT1                                           ----------->GT1                       <---------YAB1                                          <---------ATHB12                     --------->YAB1                                       --------->ANAC58       <---                     <---------ICU4                                       --------->ANAC58      <----             <---------ANAC46<---------ZAT6  <---------DAG2       --------->ATHB12  --------->YAB1  <----------DOF2   --------->ICU4           <----------DOF2     <---------ATHB12 <---------WOX13(1) -------ATHB12    --------->YAB1   <----------DOF2         ------>ZmHOX2a(1)   <---------YAB1   <----   attactttgctctctacgtataatcatgagagtgttactttagatagctttattagacctccttccaatgtttggcacacaatgaatgatagtgaattgc  19205900                                                  <-----------------AGL3                                                  ----------------->AGL2                                                  <-----------------AGL1                                              --------->ALFIN1                                            <---------TGA1a                                            ============================bZIP_DOF                     =================================bZIP_DOF                   --------->LBD16          <---------ANAC58                  --------->RAP2.3(2)       --------->TGA1a                  --------->RRTF1(2)        ============================bZIP_DOF    --------->ALFIN1 ---------->DOF2        <---------ANAC58   <---------ZAT18--------->ANAC58          --------->ANAC55(2)  <---------ANAC46--------->ANAC58          <---------O2  <---------ANAC58--------->RAP2.3(3)       --------->O2     <----------DOF2         <----------DOF2  <---------ANAC58--------->RAP2.6(2)  --------->REM1(2)    <---------ANAC58         ------>ZmHOX2a(1) -------DOF2     --------->RAP2.3(1)  <---------MYB52(1)    <---------ANAC58 ---------->DOF2 -----ANAC58 =========================================bZIP_DOF         <---------ANAC58 -----ANAC58 ---------->DOF2    <---------GLK1(1) ----------------->AG <---------ANAC58            <-   tttggcgtgcttctatagagccgcaaagaaatggttatccgtttagacgtgtccctaaattggctttcatgtttcttgccaaaggtcctttaccatttgc  19206000  Previous    Next  AGI:  At1g51760.1    Description:  IAR3 (IAA-ALANINE RESISTANT 3); metallopeptidase. Identical to IAA-amino acid hydrolase ILR1-like 4 precursor (ILL4) [Arabidopsis Thaliana] (GB:O04373;GB:O81642); similar to ILL5 (IAA-leucine resistant (ILR)-like gene 5), metallopeptidase [Arabidopsis thaliana] (TAIR:AT1G51780.1); similar to IAA-amino acid hydrolase 3 [Brassica rapa] (GB:ABB60090.1); similar to IAA-amino acid hydrolase 3 [Brassica rapa] (GB:ABB60091.1); contains InterPro domain Peptidase M20D, amidohydrolase (InterPro:IPR010168); contains InterPro domain Peptidase M20; (InterPro:IPR002933); contains InterPro domain Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro Range:  from: 19203088    to: 19205311    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g51770.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45744.1); contains InterPro domain Protein of unknown function DUF266, plant (InterPro:IPR004949) Range:  from: 19205458    to: 19206893    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version