Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------ARR11(3)                                                             -        --------------->AtSPL8                                                                   ----       <---------ANAC58                                                                          <---       <---------ANAC46                                                        --------->YAB1    ----       <---------ANAC58              <------ZmHOX2a(1)                        <---------YAB1---------   tgtttgttttcttgtactctcaagttctcttgtcgatgaggaagaaagtctgttcttgttcttgttcttgctctgtgtttatcattctatttcagaaagt  19198500    ------->TEIL    --------->ARR14(2)    <---------ARR14(2)    --------->GLK1(2)    <---------ARR11(1)   <---------ARR14(1)   <---------CCA1(2)   <---------GLK1(2)                                                           <---------ICU4 -------->ANAC46                                                      <---------ANAC58 ----->ZAT18      ---------->DOF2                                     <---------ANAC58 ------ZAT14    ------>ZmHOX2a(1)                      ----------->HVH21    --------->WOX13(1) ----->ZAT14   --------->TOE2(3)                    --------->DAG2  <---------ZAT14 ->DOF2        --------->TOE1(3)                   ---------->DOF2  --------->ZAT14     ---------->DOF2   tcaccgaatctttgattccttaaaaccctcacaagggcaaataaactcttaataaaagtgacattttcagttcagtgtcaatcttggcattaaagccaaa  19198600                                                                                    --------->ANAC58                                           <---------AHL20(2)                --------->DAG2                    <---------At4g35610   --------->AHL20(2)              <----------DOF2                    --------->At4g35610   <---------AHL20(2)             <---------ANAC58               <---------DAG2            <---------YAB1                  <---------ANAC58               <----------DOF2     <---------TOE2(3)               <---------MYB46(3)  ---------->DOF2           <------ZmHOX2a(2)       <---------TOE1(3)           ------->TEIL ---------->DOF2         ------->GAMYB             --------->MYB59    <---------MYB46(3) <---------ANAC46        --------->MYB46(3)     <----------DOF2   ---------->DOF2<-----------RAV1(1) --------->ANAC58   actcgtttcaacgatcactttttgctgcaacttcttttaggttattaatttgaaagttgttgatgtatgttgttggcttaaagtgcaagaaaagatggag  19198700                                                   <---------HSFB2a(2)                                                --------->GLK1(2)                                               --------->KAN4(2)                                              <---------HSFC1(2)                                              <---------KAN4(1)                                              --------->KAN4(1)                                              <---------HSFB2a(1)                                              --------->HSFC1(2)                                              --------->HSFB2a(1)                    <---------ARR14(2)       <---------KAN4(2)                                      -                   <------ZmHOX2a(1)      --------->ANAC58                               <----------DOF2       <---------AHL20(2)      --------->YAB1------->TEIL    <---------YAB1         --------->YAB1  <   --------->AHL20(2)  <----------DOF2    --------->ANAC58   <---------ATHB12    --------->TOE2(3)  -   atggattatatatatgggagaggaactttacaatcacaattcacacgaacattctggtaaacaatgaatgagaaaatagaaaacattaatacttttgttc  19198800                                                                                       <---------TOE2(3)                                                                                     <---------WRKY12                                                                                     <---------WRKY38(1)                                                                                    --------->WRKY18(1)       <XXXXXXXXXXXXXXXXXXXXMIR776         <---------WOX13(1)              --------->ANAC58      --------->ARR11(3)                <---------YAB1          ------->TEIL------->GAMYB      <---------ARR11(3)              --------->YAB1           *TSS        --------->ANAC58     --------->CCA1(1)               --------->ICU4         <---------------AtSPL3 <-----------HVH21 -------->YAB1---------->DOF2      ------->TEIL      <------------CBF<---------HSFB2a(2)       ------ ---------ANAC55(2)        <---------TOE2(3)       <---------YAB1    --------->HSFB2a(2) --------->YAB1 -------->ANAC55(2)       ---------->DOF2--------->YAB1 --------->YAB1   --------->MYB52(1)   <------   ttacataatatctatggaaagcttagattaaagtatgcatttatgatagacttctcattgaaaatgtacttctagcaacggaattggtcaaggattatca  19198900                                                                                    <---------DAG2                                                <----------DOF2                     <----------DOF2                                        --------->HSFB2a(2)                  <---------YAB1                 ------->MYC3           <---------HSFB2a(2)               ------>ZmHOX2a(1)    --------->MYB52(1)               <---------ARR11(3)                  <---------ANAC58    <-----------GT1       --------->AtLEC2 ---------->DOF2               <---------ANAC58          <- --->YAB1        <-------MYC3        --------->ARR11(3)                  --------->TOE2(3)        --- ---YAB1      <---------ALFIN1      <---------GLK1(1)                 ------>ZmHOX2a(1) <---------At4g35610   taagagtaacgtttcaacacgttgtgccatgaaaattgatatctcgaaagctttcgactctcttcaatggtccttccttatcaatgctttatctgctatg  19199000        <---------ANAC58        <---------ANAC46  --------->ARR11(3)                    --------->WRKY18(1)        <---------ANAC58  <---------ARR11(3)          <-----------------AGL1  <---------At4g35610    <---------LBD16      <---------GLK1(1)        <----------DOF2    --------->YAB1   ----------->RAV1(2)   --------->GLK1(1)     --------->ARR11(3)<---------WRKY12----------->GT1 --------GLK1(1)         <---------CCA1(2)     <---------ARR11(3)<---------WRKY38(1)     <---------HSFB2a(2) ---->TEIL        <-----------GT1          --------->REM1(1)   <-----------HVH21<---------TOE1(2)   aatttccctggcgagtttattcactggatatctcgttgcattactacaacatctttttcagttcaggtcaatggtgagttagcaggttatttcagaagtg  19199100                     --------->ANAC58                    --------->ZAT18                   <---------ANAC58                   <---------ANAC58                --------->ARR14(2)                <---------ARR14(2)             --------->ANAC58             --------->ANAC58        <----------ID1                                                              <---------ANAC46        <---------ETT(1)                                                           <---------At4g35610     --------->GLK1(2)                                                             <------NtERF2     <---------ARR14(2)                                             --------->ARR11(3)     --------->ARR14(2)          --------->ARR14(2)                 <---------ARR11(3)    <---------GLK1(1)--------->ANAC46                    <---------ARR11(3) <------ZmHOX2a(2)    --------->GLK1(1)--------->ANAC58        --------->ICU4     ---------->DOF2    --------->At4g35610   <------ZmHOX2a(1)<---------ZAT18       <---------YAB1 --------->ARR11(3)--------->ARR11(3)   caagaggaatccgacaaggatgcgcgctatctccatatttgtttgtcattagtatggaagttctctcaaagatgttagatcaggcagcgggagggaaacg  19199200                         --------->TOE1(2)                        <---------ICU4                         --------->TOE2(2)                    <---------YAB1           --------->ANAC58                              <---------bZIP60(1)           --------->ANAC46                           --------->WRKY12                    <---------ANAC46           --------->ANAC58                           ----------->HVH21                 --------->ZAT14       <-----------GT1   --------->TOE2(3)            --------->WRKY38(1)              <---------MYB52(1)   <<<<<<<<<MYB2--------->AtLEC2                    --------->At4g35610         --------->DAG2 <------MYB46(1)----------->GT1                     <---------At4g35610        ---------->DOF2 <------MYB83 ---------->DOF2          <---------CCA1(2) --------->bZIP60(1)----------->GT1   atttggttttcacccgaaatgcaaaaaccttggactcactcatctctgttttgccgatgacctcatgatacttactgatggtaaagtccgttcagtagat  19199300                                                                           <---------At4g35610                                                                           --------->ZAT2                                                                           <---------ZAT2                                                                           ----------->RAV1(2)                                                                           --------->At4g35610  -----                                                                      <---------REM1(2)         <----                                                                      <---------ZAT14           -----                                                     ----------->GT1  --------->ZAT14          <-----                ------->TEIL     <-------TEIL <---------ATHB12        --------->ZAT18     --------->YAB1   ggcattgtcgaagttatgaacctatttgctaaacgttcagggttacaaatcaatatggagaaaacaacattgtacacagctggagtctctgatcacaatc  19199400  Previous    Next  AGI:  At1g51745.1    Description:  Identical to Uncharacterized protein At1g51745 [Arabidopsis Thaliana] (GB:P59278;GB:Q9C8I2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21295.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45735.1); contains InterPro domain PWWP (InterPro:IPR000313) Range:  from: 19195191    to: 19198456    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g51750.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.6e-20 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 19198863    to: 19200818    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version