Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->AHL20(2)                                                                <---------AHL20(2)                                                              --------->AHL20(2)              <------                                                              <---------AHL20(2)             xxxxxxxx                                                            --------->AHL20(2)              <--------                                                            <---------AHL20(2)            <---------AHL20(2)                                                        --------->AHL20(2)               <---------AHL20(1)                                                        <---------AHL20(2)               --------->AHL20(1)                                                      --------->AHL20(2)                <---------AHL20(2)                                                      <---------AHL20(2)              --------->AHL20(2)                                          --------->ANAC58--------->AHL20(2)         --------->AHL20(1) ---------ATHB12         <---------AHL20(1)         --------->AHL20(2)               <---------AHL20(1) ------->ANAC58          --------->AHL20(2)        --------->AHL20(1)             --------->AHL20(2) ------->ANAC46          <---------AHL20(2)        <---------AHL20(1)           --------->AHL20(2) <x ------->ANAC58          --------->AHL20(1)     --------->AHL20(2)<---------AHL20(2)--------->AHL20(2) --DOF2                 --------->AHL20(2)--------->ANAC58<---------AHL20(2)    <---------AHL20(2)<--   cactcaatttcagtttttaagtagaattttatttgttttgcaccaagaaataatatatatatatatatatatatgtttttaaaaaaatatatatattttt  19184000                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           ------>ZmHOX2a(2)           ==================================HOX2a_HOX2a           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          <------ZmHOX2a(2)         <---------ARR14(2)           ------>ZmHOX2a(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->ARR14(2)           --------->ICU4        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(i)    <---------YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ANAC55(1)    <----------DOF2 <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->ANAC55(2)   <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->ANAC46     --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ANAC55(2)  <---------AHL20(1) <---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                 <---------AHL20(2) --------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)     <-----------GT1<---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->TOE2(3)<------------MYB.PH3(1)            <---------MYB46(3) ---AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---------LBD16   --------->AHL20(2)  --------->AHL20(2) xxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------AHL20(2)  <---------AHL20(2) -AHL20(2)===================================HOX2a_HOX2a   <---------AHL20(2) <---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ICU4  --------->MYB52(1)        <---------AHL20(2) ---------GT1xxxxxxxxxxxxxxxx>smallRNA(i)<---------YAB1    --------->AHL20(2) --------->AHL20(2)   tgacatctttggatccacaatgtccagtccatagttaatccttattatacggaataactgttttattaatttttttttaaaaaatttatattggttacta  19184100                                                                                       <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                              <---------AHL20(1)                                                                              --------->AHL20(2)                                                                              <---------AHL20(2)      --------->YAB1                              ---------->DOF2         <---------RVE1(1)     <---------YAB1          <---------ATHB12    <---------AHL20(2)  ----------->RAV1(2) <---------DAG2             --------->GLK1(2) <---------AHL20(1)     --------->ANAC55(2) <----------DOF2           --------->WOX13(1) --------->AHL20(1)   <-----------GT1<---------AHL20(2)   tcactttatgataacaaatgtatagtagccaatctataatttgcataatatataaagaattagggaaatttacctgatattttatttatttttttgatga  19184200                     <---------AHL20(2)                    --------->AHL20(2)                                                 <------MYB46(1)                <---------AHL20(2)                                                     <------MYB83            <---------AHL20(2)             --------->AHL20(2)                     <---------AHL20(2)        --------->AHL20(2)                <---------AHL20(2) <---------YAB1      <---------AHL20(2)       <---------AHL20(2)     <---------AHL20(2) <---------YAB1              <----------DOF2    --------->AHL20(1)     <---------GLK1(2)   <---------AHL20(2)         ---------->ID1            -   aaaacatatattatttagtttatttaatagaattttttgaacatattatttattcttgagtttatatttgtaatttgttcttttttatttggtgaaagaa  19184300                              <---------AHL20(2)                     <---------ANAC55(2)                     --------->ANAC55(2)                     <---------ANAC46                     <---------ANAC58                     <---------ANAC58                       --------->AHL20(2)                 <---------GLK1(1)                   ----------->GT1           ---------->DOF2 <---------AHL20(2)  <---------AHL20(2)---------->DOF2 ------>TEIL     --------->GLK1(1)          ----------->GT1 --------->YAB1               <-----------GT1   tgaatatttgttctaaaggaaatgcgtattattttcttagaacaaatagttaaatgagttaataaaaaaaagaaattagataaactagattaaaccctta  19184400                                                                          <---------AHL20(2)                                    --------->ATHB12           <---------MYB46(3)                                   <---------YAB1              <------MYB46(1)  <---------ANAC58                               <---------DAG2              <-----------RAV1(1)  <---------ANAC58                      --------->ANAC55(2)              <----------DOF2  <---------YAB1         <-----                      --------->ANAC58                 <---------DAG2<---------YAB1           ------>MYB46(1)                      --------->ANAC58  *TSS      <-----------GT1    <---------AHL20(2)       ------>MYB83                      <---------ANAC55(2)        <------------------------ANAC81<---------ANAC46             <-----------GT1<-----------GT1     <-----------GT1<------MYB83     <---------RAP2.6(2)<-   agaagttagtagttcttacttcttacgcattaaccttttgatttgggatttttctctctttttgttggttttttattattttgcgtctgcaataccaatc  19184500                                            --------->TOE2(2)                                            --------->TOE1(2)                                          --------->ARR14(2)                                         <---------GLK1(2)                                      --------->YAB1                                    <----------DOF2                                     --------->At4g35610                                <---------DAG2 <---------AtMYB61     --------->At4g35610<---------ARR14(2)                       --------->DEAR3(2) ----ATHB12<-----------GT1 ---------->DOF2--------->GLK1(2)                      --------->MYB52(1) ---------DOF2<----------DOF2      --------->YAB1                              --------->DEAR3(1) <--   gctttggtcgatttatctttatccccgctcaaagctctcatcagaatctgcgaagacaccaaaattatcaacaagttcgagccgaacagactttatgtct  19184600                                                          --------->ANAC58                                                          --------->ANAC58                                                 <-----------HVH21                                                --------->O2                                                <---------O2                                                --------->ANAC46                                            <---------ATERF1(1)                                            ------>NtERF2 --------->ANAC46                                           ----------->HVH21                          <----------DOF2           ----------->RAV1(1)     <----------DOF2        --------->AtLEC2          ---------->ID1          <----------ID1     <---------GLK1(1) --------->MYB46(3)  --------->DAG2  <-----------GT1   <---------ZAT6      <-----------RAV1(1) --------->DEAR3(1)     ---------->DOF2 <------------------ --------DOF2        <----------DOF2     <---------RAP2.3(1) ---------->DOF2  <----------DOF2   ctttagtcttaagcgacaattgtctttgtgggtttctctttttcggcgacccgtcgctacaggcaaagtaaagttgtaatctttttttctttttttttgg  19184700                               --------------->AGL15                               <---------------AGL15                  --------->ANAC58           --------->ARR11(3)        --------->MYB46(3)                  --------->ANAC58           <---------ARR11(3)       ------>MYB46(1)                  --------->ANAC55(2)     --------->ANAC58            ------>MYB83                  --------->ANAC46        --------->ANAC58            -------->P              <----------DOF2 ----------------->AGL2           --------->HSFC1(2)           <-------- ------ANAC81 <---------DAG2 --------->At4g35610               <---------HSFC1(2)    ---------->DOF2   gtcttcttcattttagctttacgaaattatctgctaaaatcagcaagtatctctcactatattgaagtttccaacctctgggtatgccaaagttagctta  19184800                                                      <------MYB46(1)                                                      <---------ANAC55(2)                                                      --------->ANAC55(2)                                                      <------MYB83                                                     --------->MYB59                                                     --------->MYB111(1)                                                     --------->MYB46(2)                                                    <---------MYB55(1)                                                   <---------MYB52(1)                                               <---------ANAC46                                               <---------ANAC58                                               <---------ANAC58                                             ------>NtERF2                                            <---------DEAR3(1)                                            <---------RAP2.6(2)               <---------WOX13(1)                                           <---------At4g35610             <---------YAB1            --------->ARR11(3)             <---------LBD16               <---------ANAC46        ---------->DOF2                <-----------RAV1(1)   ----------->GT1--------->ATHB12      <-- -At4g35610 <---------ARR11(3)         --------->ALFIN1 <XXXXXXXXXXXXXXXXXXXXMIR781             -----   ttgattttgtgaaagatgttagatttgatcaaatgtttcaagtgctgcggcttgttaggtattcagtaaattttggtgtgattgaagtttttttgagtta  19184900  Previous    Next  AGI:  At1g51720.1    Description:  glutamate dehydrogenase, putative. similar to GDH2 (GLUTAMATE DEHYDROGENASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07440.1); similar to GDH2 (GLUTAMATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G07440.2); similar to hypothetical protein OsJ_002154 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12329.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69269.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45733.1); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase, dimerisation region; (InterPro:IPR006097); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase; (InterPro:IPR006095); contains Int Range:  from: 19184440    to: 19190200    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version