Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->MYB46(3)                       --------->ANAC58                       --------->ANAC58                     --------->MYB46(3)                    --------->At4g35610                      <---------WRKY18(1)                    <---------At4g35610                     --------->WRKY12 <---------ANAC46                   --------->ANAC58        <---------------AGL15       <----------DOF2                   --------->ANAC58        --------------->AGL15    --------->ARR11(3)                ------>NtERF2             ----------------->AGL1    <---------ARR11(3)   <---------GLK1(1)               --------->LBD16         <---------MYB52(1)   --------->WRKY38(1)   <-----------RAV1(1)              <---------LBD16  ------->TEIL--------->TOE2(3)--------->WRKY45 <---------ANAC58     ----------->GT1<------NtERF2      --------->DOF5.7(2)<----------DOF2   ---------->ID1 ->AHL20(2)  <---------LBD16<---------ATHB12<----------DOF2 ----------->HVH21<---------ANAC58 -YAB1  ---------->DOF2-------->P   <---------TOE1(2) <---------ALFIN1------>ZmHOX2a(2)  --------->GLK1(1)   tagcattcagtaaaacccgggcagcaaccaatgaatccaacgttacctttaagagaccacctttgaccatgatcttttggcgttctggtggaactccagt  19183200                                                                                   --------->ANAC58                                                                              --------->O2                                                                      <----------DOF2     <---------ZAT6                                                                  ======================bZIP_DOF                                                                  <----------DOF2  --------->ANAC58                                                             ----------->RAV1(1)<---------REM1(2)        <---------At4g35610               --------->TOE2(3)--------->MYB46(3) --------->bZIP60(2)        ----------->RAV1(2)            --------->MYB52(1) ------>MYB46(1)     --------->TGA1a<<<<<<<<  --------->YAB1                <------NtERF2--------->WOX13(1)<---------ALFIN1 --------->ZAT14 <---------ATHB12            <------ZmHOX2a(1)            ------>MYB83==================bZIP_DOF   caaatcatacaactgagccttgaaaacataaggaggcagactaacgtcaatctcgataccatccaacactttcttttgccacttcacgcttactgtcaaa  19183300                                                                  --------->ANAC58                                                                  --------->ANAC46                                                                  --------->ANAC58                            <-----------GT1                      --------->SPL7                        <------ZmHOX2a(1)      --------->YAB1 <---------HSFB2a(2)              ----------->RAV1(1)             <---------ATHB12<-----------RAV1(2) <WRKY18     --------->MYB46(3)   --------->WOX13(1) --------->MYB46(3)      --------->ZAT14 <------NtERF2   atcaaacaaaaatcaacaacaaattaggatttacatcagtcaaatccaaacatcatccactatcccagacgacacaaacttcactatcaactctcggcaa  19183400                   <---------ARR14(2)                   --------->ARR14(2)                           ----------->RAV1(1)              --------->At4g35610                              --------->At1g77200             XXXXXXXXXXXXXXXXXXXX>MIR2111A*                    --------->DEAR4(1)            --------->YAB1                                     --------->DEAR3(1)            --------->ATHB12                                   ----------->HVH21            <---------ICU4                     <-------TEIL    --------->DREB2C(2)           <---------ATHB12                <---------------AtSPL3         ------>MYB83                      --------------->AtSPL8         ------>MYB46(1)               ---------->DOF2   --------->MYB46(3)       --------->TOE2(3)     <---------YAB1<---------------AtSPL8            <---------ARR14(2)       <---------MYB59       <---------ANAC55(2)      --------->REM1(1)      --------->ARR14(2) <----   aatcaaaaacctaatcatcggaatccagattacgaaaactcgaaaggagtacatctacaacaacaccgacagagaaatggattcgaagaagtaaacgagg  19183500                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                              --------->ARR14(2)                           <---------AtLEC2                        <---------HSFB2a(2)   <---------ARR14(2)                <---------HSFC1(2)  - --ZmHOX2a(1)  <---------ICU4       ---------->DOF2       <---------HSFB2a(1)   --------->HSFC1(2) --   agaaatagatcgattaagcattagttatcgaagaaatcgaaagagaaggaacctgtaggcatcttcgctgtgagaactgagaggcttcttcttgcttgga  19183600                                                                                                   <-                                                                                                <----                                                                                      <---------ANAC46        ------->GAMYB      <-----------RAV1(1)                                      <-----------HVH21       --------->ANAC58<----------DOF2                                              --------->ARR14(2)       --------->ANAC58<---------DAG2                                    <----------DOF2  --------->ALFIN1   <------NtERF2--------->ARR11(3)                               <---------CCA1(2)  <---------ARR14(2) --------->ANAC58     <---------ANAC58                         --------->DEAR3(1) <---------MYB46(3) --------->ANAC58     <---------ANAC58                       <---------At5g28300 <---------ANAC58  -- -------->RAP2.6(3) <-----------GT1                         <-----------GT1      <---------ANAC58<--- ------->CCA1(2)<---------GLK1(2)  *TSS    ---------->DOF2<-----------HVH21     <---------At4g35610<-   gagacggcaacgaaattagattttgctttttgttgtctgattctacaaagttccgatatatgtcaccgtctcttccttttggagcgggtcgggtttgggg  19183700       --------->ARR14(2)       <---------TCP16(1)       <---------ARR14(2)     --------->LBD16   <---------LBD16   ------>ZmHOX2a(2)  --------->ARR14(1)  <------ZmHOX2a(2)                                             --------->LBD16 <---------ARR14(2)                                             ----------->GT1 --------->ARR14(2)                 ------->TEIL              <---------LBD16                  ------ -----MYB83                  --------->MYB52(2)          <---------ZAT18                   <--------- ---GAMYB <---------ALFIN1 <--------P                  <---------ZAT2                    --------->AHL20(2) --------->ARR10           <---------MYB52(1)          --------->At4g35610           <---------YAB1 -----P<---------TCP20    <---------MYB52(1)           <---------At4g35610         --------->YAB1 -----MYB46(1)         <---------LBD16                 --------->ZAT2   <-----------HVH21<---------AHL20(2)   ttggatccggttccactcgggtttgtccggttagtttgaatctcggttctaaatatcagctccctccggttatatgtcacttcaattctaattaaaccgg  19183800                                                                                                    <                                                                                                   --                                                                                         <-----------GT1                        <---------CCA1(2)                                           <---------AHL20(2)                     <------ZmHOX2a(2)                                   <---------AHL20(2)        --                    <---------ARR11(3)             ------>ZmHOX2a(2)  <------------------------ANAC81                    --------->ARR11(3)<---------REM1(2)              <---------AHL20(2) <<<<<<<<<<GT-3b               --------->TOE2(2)    <---------ETT(2)            <---------YAB1<---------AHL20(2)   -- ----->GT1     --------->TOE1(2)    --------->ETT(2)     <---------TOE2(3)<---------AHL20(2)<-------- --GT1        --------->YAB1<----------DOF2    <---------YAB1 <---------At4g35610  <---------AHL20(2)   ttgaaaatttgggttaacataagatcatctcttttctgtctacacacatatgatcgattaaggcatatgattttttttatttttttttatttttcttttc  19183900                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                              <---------AHL20(2)              <------                                                              --------->AHL20(2)             xxxxxxxx                                                            --------->AHL20(2)              <--------                                                            <---------AHL20(2)            <---------AHL20(2)                                                        <---------AHL20(2)               --------->AHL20(1)                                                        --------->AHL20(2)               <---------AHL20(1)                                                      --------->AHL20(2)                <---------AHL20(2)                                                      <---------AHL20(2)              --------->AHL20(2)                                          --------->ANAC58<---------AHL20(2)         --------->AHL20(1) ---------ATHB12         --------->AHL20(1)         --------->AHL20(2)               <---------AHL20(1) ------->ANAC46          <---------AHL20(1)        --------->AHL20(1)             --------->AHL20(2) ------->ANAC58          <---------AHL20(2)        <---------AHL20(1)           --------->AHL20(2) <x ------->ANAC58          --------->AHL20(2)     --------->AHL20(2)<---------AHL20(2)--------->AHL20(2) --DOF2                 --------->AHL20(2)--------->ANAC58--------->AHL20(2)    <---------AHL20(2)<--   cactcaatttcagtttttaagtagaattttatttgttttgcaccaagaaataatatatatatatatatatatatgtttttaaaaaaatatatatattttt  19184000                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           ==================================HOX2a_HOX2a           ------>ZmHOX2a(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          <------ZmHOX2a(2)         <---------ARR14(2)           <---------YAB1         --------->ARR14(2)           --------->ICU4         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ANAC55(2)      xxxxxxxxxxxxxxxx>smallRNA(i)    ------>ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ANAC55(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ANAC46    <----------DOF2 <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->ANAC58      <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->ANAC58     <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ANAC55(1)  --------->AHL20(2) --------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                 <---------AHL20(2) <---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)     --------->MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->TOE2(3)<------------MYB.PH3(1) <---------AHL20(1) ---AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---------LBD16   --------->AHL20(2)  --------->AHL20(2) xxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------AHL20(2)  <---------AHL20(2) -AHL20(2)===================================HOX2a_HOX2a   <---------AHL20(2) --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ICU4  <-----------GT1<---------AHL20(1)    <---------MYB46(3) ---------GT1xxxxxxxxxxxxxxxx>smallRNA(i)<---------YAB1    --------->AHL20(2) <---------AHL20(2)   tgacatctttggatccacaatgtccagtccatagttaatccttattatacggaataactgttttattaatttttttttaaaaaatttatattggttacta  19184100  Previous    Next  AGI:  At1g51710.1    Description:  UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 6 (UBP6) [Arabidopsis Thaliana] (GB:Q949Y0;GB:Q56ZE7;GB:Q9C8H9;GB:Q9FPT4); similar to UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT3G21280.1); similar to Os01g0550100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043299.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45730.1); similar to unknown [Picea sitchensis] (GB:ABK24394.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal Range:  from: 19179310    to: 19183635    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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