Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <------NtERF2                                                                                        --------->ATERF1(1)                                                                                       ------>NtERF2                                                                                       <---------RRTF1(1)                                                                                       <---------RAP2.3(1)                                                                                    <---------ATERF1(1)                                                                                   <---------ARR14(2)                                                                                   --------->ALFIN1                                                                                   --------->ARR14(2)                                                                                  <-------GAMYB                                                                                  --------->ATERF1(1)                                                                                 <---------DEAR3(2)                                                                                 --------->MYB55(2)                                                                                 <---------MYB46(3)                                                                                <---------DREB2C(2)                                                                                <---------ANAC58                                                                                <---------DEAR3(1)                                                                                <---------ANAC58                                                                                <---------RAP2.6(2)                                                                                <---------ANAC46                                                                               <------NtERF2                                                                              ------------>AtMYB77                                                                              ------>NtERF2                                                                             <---------AtMYB61                                                                             --------->ALFIN1                                                                             ----------->HVH21                                                                             <---------DEAR3(1)                                                                            <---------ABI4(1)                                                                            <-------GAMYB                                                                            --------->ATERF1(1)                                                                           <---------DEAR4(2)                                                                           <---------ATERF1(1)      <                                                                           <---------DEAR3(2)       <                                                                           <---------MYB46(3)       -                                                                          <---------DEAR3(1)       <-                                                                          <---------DREB2C(2)      <-                                                                          <---------AtMYB61        <-                                                                          <---------ANAC46        ---                                                                          --------->ALFIN1        <--                                                                         <---------ABI4(1)       <---               <------MYB83                                              --------->ATERF1(1)---------               <---------ANAC58                                          <------NtERF2<---------RAP2.3(2)               <------MYB46(1)                           <---------ZAT14 ------>NtERF2<---------ANAC58               <---------ANAC46                      <------NtERF2      <---------RRTF1(1)<------NtERF2               <---------ANAC58                     --------->LBD16     <---------RAP2.3(1)<------NtERF2              --------->MYB46(2)                   --------->DEAR3(1)  <---------RRTF1(3) ------>NtERF2              <---------AtMYB61                   <---------LBD16      <---------RRTF1(2) <---------At4g35610        <---------YAB1          <---------ANAC46 --------->LBD16       <---------RAP2.3(2)<---------LBD16      <---------ICU4            <---------ANAC58 ------>NtERF2         <---------DEAR3(1)--------->DEAR3(1)     --------->ICU4             <---------ANAC58--------->ANAC46       <---------RAP2.6(2)--------->LBD16     <---------YAB1        <----------DOF2      --------->DEAR3(1)     <---------RAP2.3(3)--------->At4g35610 --------DEAR3(1)<-----------RAV1(1)           <---------LBD16        <---------LBD16 <---------ANAC58 --->ZAT2     --------->MYB111(2)       <---------At4g35610  ---------->DOF2<------NtERF2<---------ANAC46   ttcggtgattatgagtttggtgttggaggctttggcttgtttagctatctccgccggagtgaagaaagggtttgcggcggtggcggttgcgccgcggaag  19164800         ---------->DOF2    --------->DEAR3(1)    <---------ANAC46   --------->ATERF1(1)   <------NtERF2  ------>NtERF2  <---------ORA47(2)  <---------ATERF1(1)  <---------DEAR4(2)  <---------RAP2.3(1)                                                                        <------NtERF2  <---------ERF1                                                                             -------- <---------RAP2.3(3)                                                                        <-------- <---------RAP2.3(2)                                                                        <-------- <---------ANAC46                                                                           <-------- <---------RAP2.6(2)                                                                        ------>NtERF2 <---------DEAR3(1)                                                                        <---------DREB2C(2) --------->ATERF1(2)                                                                       <---------RAP2.3(3) ---------ABI4(1)                                                                          --------->ATERF1(2) ------NtERF2                                          <---------bZIP60(1)                 <---------RAP2.6(2) -------->ATERF1(1)        ----------->HVH21           <---------O2                        <---------RAP2.3(2) --------ATERF1(1)        <---------HSFB2a(2)          --------->bZIP60(1)                 <---------RRTF1(2) --------RAP2.3(1)    <---------ARR14(2)               --------->O2            ----------->GT1  <---- --------DEAR4(2)     --------->ARR14(2)         ----------->TGA1         ------>NtERF2    <---------ANAC46 ------>ALFIN1     ----------------->AGL1        ----------->HVH21       --------->DEAR3(1)<---------DEAR3(1) -------DEAR3(1) <------ZmHOX2a(1)          <------ZmHOX2a(1)       <---------DOF5.7(2)    <---------RRTF1(3) ---ZmHOX2a(1)  <----------ID1            --------->ALFIN1         <---------WRKY38(1)     <---------ATERF1(2) >LBD16 <------ZmHOX2a(1)<---------LBD16 <------ZmHOX2a(1)        --------->DOF5.7(2)     <---------LBD16   gaggcggcgaggaaagagaggacgaattcgggacagtttgggaggaggagcatgacgacgtcgttttggttaacgccgagtttgtgaaaattggcggcga  19164900                                               <---------DEAR3(2)                                               <------MYB46(1)                                             <---------MYB55(1)                                             <--------P                                             <---------MYB52(1)                                            <---------MYB52(1)                                            <-------GAMYB                                           <---------MYB46(3)                                           <---------DEAR3(2)                                          <---------DEAR3(1)                                         <---------ANAC46                                      --------->ALFIN1                                      ----------->HVH21                                     <-------MYC4                                     <-------MYC2                                     ------->MYC3                                     <-------MYC3                                     ------->MYC4                                     ------->MYC2            =========================================MYC_MYB            <---------ANAC58         ------->PIF5            <---------ANAC46         <-------PIF5            <---------ANAC58         -------->ABF1            ========================================MYC_MYB            <---------O2            --------->ANAC55(2)            <---------bZIP60(2)     <---------O2            <---------TGA1a         --------->ANAC46   --------->ATHB12           ----------->bZIP911(1)   ==================MYC_MYB         ----------->TGA1           <---------TGA1a  <---------MYB52(1)         ----------->HVH21          --------->TGA1a <---------At4g35610       <---------At4g35610          ================MYC_MYB       --------->At4g35610          =================MYC_MYB    <------NtERF2      <------NtERF2================MYC_MYB   --------->LBD16   <---------DEAR3(1) ------------>AtMYB77  <---------ANAC58<---------TGA1a   --------->O2    <-------GAMYB  <---------ANAC46--------->TGA1a  ------------>OsbHLH66  <---------ANAC58====================================MYC_MYB <<<<<<<<<E2Fd    ==================================MYC_MYB <<<<<<<<<E2Fc    ===================================MYC_MYB                  --------->ARR14(2) <---------LBD16  ==================================MYC_MYB                   <---------ARR14(2)   <- ->ATERF1(1)--------->O2         <---------REM1(2) <---------MYB46(3)      <---------ANAC58       --- -ERF1 ----------->bZIP910(2)  --------->ZAT18 <---------MYB46(3)          <---------ANAC58 <-------- -RAP2.3(1)----------->STF1    <---------ZAT18 <------MYB83--------->MYB59 <---------ANAC46 --------- -ORA47(2)<---------TGA2(2)    --------->ZAT14<---------AtMYB61 --------->ANAC58      <---------ARR11(3) -----ARR14(2)--------->ALFIN1 <---------ZAT14<---------MYB46(3)--------->ANAC58      --------->ARR11(3)   tttggcgggagatgacgtggacgtcggagtaagtgtacacgtggccggttggtccgttgattaggcaaggcttagtggcgaattcggagatgttttggaa  19165000                                                                    <-----------RAV1(1)                                                               <-----------HVH21                                                               <-----------TGA1                                                              --------->ANAC55(2)                                                              --------->ANAC46                                                              <---------ANAC55(2)                                                              --------->bZIP60(1)                                                              <---------TGA2(1)                                                              <---------bZIP60(1)                                                              --------->bZIP60(2)                                                              <---------ANAC58                                         --------->At5g28300  <<<<<<<<<<HY5                         <---------HSFB2a(2)                  <---------ANAC58                         --------->HSFB2a(2)  ==========================bZIP_DOF                        <---------LBD16  <---------MYB52(1)   <---------bZIP60(2)                      <---------ARR14(2)----------->GT1       --------->TGA2(1)                    <---------MYB46(3)  --------->LBD16       <---------TGA1a                    --------->MYB55(2)<---------LBD16         --------->O2                   --------->ALFIN1 --------->ARR11(3)        <---------O2                 <------MYB83----------->GT1  <----------DOF2 --------->TGA1a                     <--     <---------ANAC46<---------SPL7 <---------ARR14(2)       ----------->STF1                     --- --------REM1(1) <------MYB46(1)    --------->ARR14(2)       <-----------STF1<---------REM1(1)    === ------>ARR11(3)--------->MYB111(2)<---------GLK1(1)        <---------TGA2(2)<-----------RAV1(1)  --- -HSFB2a(2)    --------->CCA1(2)   --------->CCA1(1)       ----------->TGA1  <---------MYB46(3) <---- >HSFB2a(2)  --------->CCA1(2)     --------->RVE1(1)------>ZmHOX2a(2)  <---------MYB46(3)     <------   gatgtagtcgtggagagataggtggttcgggatgtaaatatccggtaactttgatcggaaaatgacgtcactgttgttgttgttgctctgtttctccatc  19165100          <---------ANAC58          <---------ANAC58                                                                     <-----          <---------ANAC46   ----------->GT1                                                   ------     <---------ARR14(2)  <------NtERF2                                      --------->DAG2 <---------ANAC58     --------->GLK1(2)  >>>>>>>>>>>>>>>>>LFY                                <---------TOE2(3)  <-----     --------->ARR14(2) ------>NtERF2                                     ---------->DOF2  <-------GAMYB -------At4g35610      --------->bZIP60(1)                         ----------->GT1         <---------ANAC58 ------>At4g35610      <---------PCF2                           <---------ANAC46 <------MYB83  <----- =============================RAV   ----------->GT1        <---------ARR11(3)    <---------MYB46(3) -------->RAV1(2)      <---------bZIP60(1)     <---------YAB1  <---------TOE2(3) <------MYB46(1) -----ALFIN1          --------->RAP2.3(1)    ----------->GT1--------->CCA1(2)   <---------AtMYB61 -----HVH21       <-----------RAV1(1)    --------->ICU4    --------->ARR11(3)  <--------P <---------MYB46(3)   acctgagaaactgcttgttcttgtggcgccattgtaaatagtaaatattgtgatattcaaagatttaggtggaaaaaaaaggttggtttttttggttgtg  19165200                                                                                  <------MYB83                                                                                  ----------->GT1                                                                                  <---------MYB46(3)                                                                                  <------MYB46(1)                                                                                 <---------MYB46(3)                                                                                 <---------DEAR3(1)                                                                                 --------->MYB46(2)                                                                                 --------->MYB55(2)                                                                                 --------->MYB111(1)                                                                                 <---------AtMYB61                                                                                 --------->ALFIN1                                                                                 --------->MYB111(2)                                                                                <---------MYB55(1)                    *TSS    <------ZmHOX2a(1)                                   <--------P         <----------DOF2 <-----------RAV1(2)                                  <---------ANAC46 ----ANAC58     ----------->HVH21                               --------->LBD16<-------GAMYB ----->GT1    <---------ANAC58                        ------------>CBF  <---------DEAR3(1)         <- ----ANAC46   <---------ANAC58                <-------TEIL    <---------LBD16<------NtERF2      <---- ----ANAC58   <---------ANAC46            <------ZmHOX2a(1) <-----------GT1--------->ALFIN1     <----   tgaattttaggctttggcctgaaggaaacaggagttgtatcggaggagttcatatagacaattcaccggagtagacggtggggttggtgaaaatgttagt  19165300                                                                                       <---------ZAT2                                                                                  <------MYB83                                                                                  <------MYB46(1)                                                                                 --------->MYB59                                                                                 <---------MYB46(3)                                                                                 --------->MYB46(2)                                                                                <---------MYB55(1)                                                                               <---------MYB52(1)                                                                             <---------ANAC58         <---------YAB1                   --------------->AGL15              <---------ANAC58         --------->ICU4                   <----------DOF2               <---------O2   --------->ZAT2       --------->YAB1                 <-----------GT1                   --------->ANAC46  <-------TEIL --------MYB46(3)               ---------->ID1                          --------->O2   --------->At4g35610 -------RAV1(1) --------->At4g35610  <---------AHL20(2)               <-----------GT1  <---------At4g35610 -----ZAT6      <---------At4g35610 --------->AHL20(2)   <---------GLK1(1)   <---------ANAC46    <---   gttgttgtttcatgattttgctgagggtgattttgtcatttaatcttttttgagtatgggtttctcaaattttcacgttgcgtttggtaagctgcatttc  19165400                                           <---------ARR14(2)                                      --------->ANAC46                                  --------->YAB1                              <---------AHL20(2)                             <---------AHL20(2)                             --------->AHL20(1)                             <---------ARR11(3)                             --------->ARR11(3)                             --------->AHL20(2)                             <---------AHL20(1)                                         --------->ANAC58                       ----------->GT1--------->ANAC58           <-----------GT1        --------->ANAC58 <----------DOF2      <---------ZAT6  --------->ANAC58           --------->MYB52(1)     --------->ANAC46 -------DOF2<---------ANAC55(2)   <---------AHL20(2)            --------->AHL20(2)  --------->YAB1<--   tttcttttaaaatcacataaactagtggtaatatatttataagcaaatttgtatttttctgaaaaattaactggattttgtatttttcataagcaaattt  19165500                               --------->YAB1                               --------->TOE2(3)                              <---------YAB1                             <---------TOE2(3)                          <---------AHL20(2)                      <---------AHL20(2)                      --------->AHL20(2)       --------->AHL20(2)                     <---------AHL20(2)       --------->AHL20(2)                                   <-                 <---------AHL20(2)  -------->HAHB4                     <---------ARR14(2)         --                 --------->AHL20(2)  --------->YAB1                     --------->ARR14(2)     ------        ----------->GT1 <---------YAB1  ----------->GT1   ----------->GT1                 ----------- --------DOF2    <---------AHL20(1) <---------YAB1 ---------->DOF2 <---------TOE2(3)  --------->AHL20(2)   ctttgttgaaatgttatattttatttatttttatgttaattatagtaaataaaaaaagaatggttatttaagaatatttgcaaaaaaaaaaaatgtaaca  19165600                                                                               <---------ICU4                                                                              <---------YAB1                                                                        --------->DAG2                                                                       ---------->DOF2                                       --------->AHL20(2)          <---------AHL20(2)                               <---------At5g28300                <---------AHL20(2)  ----------->GT1        <---------ANAC55(2)                      --------->AHL20(2) <---------TOE2(3)       --------->ANAC55(2)                  --------->AHL20(2) --------AHL20(2)       <---------TOE2(3)                     <---------AHL20(2)             <------- ------->AHL20(2)   --------->YAB1--------->At5g28300        --------->AHL20(2)--------->ATHB12 --->ICU4          <---------YAB1--------->TOE2(3)        --------->ATHB12    <---------ATHB12     <- >GT1     --------->AHL20(2)  <-----------GT1          --------->ANAC55(2)    --------->ICU4<--------   attaatgtaaaaaaaaatgttttgataacgtattaccgtaattgaatatgtttcttcacatgatttaattaaataaagtaatgatttgtatgtttttcca  19165700  Previous    Next  AGI:  At1g51680.1    Description:  4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase. Identical to 4-coumarate--CoA ligase 1 (4CL1) [Arabidopsis Thaliana] (GB:Q42524;GB:Q8RY63); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL3 (4-coumarate:CoA ligase 3), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G65060.1); similar to 4CL5 (4-COUMARATE:COA LIGASE 5), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21230.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1) Range:  from: 19162420    to: 19165220    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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