Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------TOE2(3)                                               <----------ID1  --------->MYB52(1)                                          ---------->DOF2      <---------DOF5.7(2)                                         --------->AtMYB61   --------->DOF5.7(2)                                      --------->AtMYB61     --------->TOE2(3)                <-----------ARR10     <---------ALFIN1     <--------HAHB4                          <-              ---------->DOF2        --------->MYB46(3)    <---------ICU4                          --           --------->ANAC58        ------->GAMYB          --------->ICU4                        -----           --------->ANAC58        --------->AtMYB61      <---------YAB1                      <------ --------->ARR11(3)               <---------MYB55(2)     <---------ARR11(3)           --------->ARR11(3) --->DOF2---------->DOF2          --------->MYB46(3)     --------->ARR11(3)     --------->YAB1-------   gatgatatagctaaagcaaagctaacctccttgacaaccaccaccaaagagaacaagatgatcattaacgaagttgagagaatgagaagctctagggatc  19122600           --------->GLK1(2)          <---------ARR11(3)          --------->ARR11(3)          --------->ARR14(2)                 ----------->HVH21          <---------ARR14(2)             ------>ZmHOX2a(2)          <---------GLK1(2)             <------ZmHOX2a(2)         <---------HSFC1(2)            --------->AGP1--------->MYB52(1)         <---------HSFB2a(1)           <---------ARR14(2)         --------->HSFB2a(1)           <---------ARR14(3)         --------->HSFC1(2)--------->At4g35610    <---------At4g35610        ----------->ARR10  ----------->RAV1(2)    --------->At4g35610 --------ARR14(2)     <---------ICU4   --------->ARR14(3)  --------->GLK1(2) ------->ARR14(2)     --------->YAB1   --------->ARR11(3)  --------->ARR14(2) ->ZmHOX2a(2)        <---------YAB1    <---------ARR11(3)  <---------ARR14(2)                  ------ ---ARR14(2)       <---------ICU4      --------->ARR14(2) <---------GLK1(2)                 <-------TEIL -->ARR14(2)       --------->YAB1     --------->GLK1(1)--------->YAB1               --------->TOE2(3)   ggaaacgaagaagattcttcatcatcatcatctgggtctgagatcttgtgacagcaaacagaatccatcttataaactcgctgaaacatcaacatccatg  19122700                                                                                            <--------                       --------->TOE2(3)                                                    ---------                       <----------DOF2                                                     --------->ANAC58                       --------->TOE1(3)      --------->PCF5                          <------NtERF2              <---------ICU4                <------MYB83                          <-----------HVH21             --------->ICU4             <-----------RAV1(1)        <-----------ARR10--------->ETT(1)        <---------ANAC55(2)            --------->ARR11(3) <-----------HVH21--------->LBD16 --------->ANAC58 --->AtLEC2---------->DOF2---------->DOF2   <------MYB46(1)     --------->ANAC46 <-----------RAV1(1)<   aaaacccatctcgtaaagatgacaactttaaagcatctacagatgttggtccccattctcgttcacacagagcttcccagagactgtcggagcaagctag  19122800               <---------At4g35610                             ----------->GT1          <----------DOF2                    <---------HSFB2a(2)                    <--------P         <---------ANAC58                  <---------LBD16     <---------MYB46(3) ----------->GT1    <---------CCA1(2)                  ------->TEIL    --------->ANAC58      <---------WRKY12 -STY1(2)<---------ANAC46        <------ZmHOX2a(1)     --------->ANAC58    <-----------HVH21        < >STY1(2)<---------ANAC58   <------ZmHOX2a(1)--------->HSFB2a(2)       --------->CCA1(2)    <-------- ---------ANAC46      <XXXXXXXXXXXXXXXXXXXXMIR847  >>>>>>>>>TBF1<-------GAMYB<---------WRKY38(1)    <   agacttgtatcgcttgcaggtcattgagaaggagaggattgaatctacgggaagaagaagcaagatggttaagagatggtcatcgggtaaattgattata  19122900                                                   <---------RAP2.6(3)                                                  --------->DEAR3(1)                                                  --------->RAP2.6(2)                                                  --------->RAP2.3(2)                                                  --------->RAP2.3(3)                                                  --------->RRTF1(3)                                                  --------->RRTF1(2)                                                  --------->DREB2C(2)                                                  <---------ATERF1(2)                                                  --------->ATERF1(2)                                                 --------->ORA47(2)                                                 --------->RAP2.6(1)                                  --------->ARR14(2)                                  --------->GLK1(2)------>NtERF2                                  <---------ARR14(2)<------NtERF2                         <------NtERF2           --------->RAP2.3(1)                        --------->LBD16          --------->ERF1                       <---------DEAR3(1)        --------->RRTF1(1)                       <---------ANAC46          --------->ATERF1(1)                      <------NtERF2             <---------RAP2.3(1)                      --------->ATERF1(1)       --------->At4g35610                      <---------LBD16           <---------At4g35610                     <---------ORA47(2)         ------>NtERF2                                       -                     <---------RAP2.3(1)        <---------ATERF1(1)                                 < <----------DOF2    --------->ANAC46            --------->LBD16<---------GLK1(1)                    - ---------ANAC58    <---------RAP2.3(2)        --------->ANAC46--------->GLK1(1)   --------->GLK1(2)- -YAB1              <---------DEAR3(1)  <--------P--------->ANAC46        <------ZmHOX2a(1)        <- ---------ANAC58    <---------RAP2.3(3) <---------WOX13(1)   <------ZmHOX2a(1)    <---------GLK1(2)--   gggcttgaagactgagaagtagacggcggagaagagtttctggttgattccgccgccatgagaggaaatcggagaaggattttagattcttggtgagaag  19123000                         <-----------TGA1                         <-----------HVH21                        --------->bZIP60(1)                        ========================MYC_MYB                        --------->TGA1a                        --------->O2            <---------YAB1               <---------MYB52(1)            --------->ICU4              <-------GAMYB           ----------------------->TaNAC69(2)                             <------------------------ANAC81          --------->YAB1<---------O2   <---------MYB46(3)     --------->YAB1         --------->ICU4 --------->bZIP60(2)         --------->At5g28300   <----------DOF2 -------->ATHB12        <---------bZIP60(1)        ----------->GT1    ------>ZmHOX2a(1) ---------ICU4          <---------TGA1a*TSS      <---------LBD16  <---------ARR11(3)               <- -------->ATHB51<---------MYB46(3)     --------->MYB52(2)    --------->AHL20(2)           <----------DOF2 ------->ATHB1 <---------YAB1         <---------------------WRI1  --------->ARR11(3)  <-----------GT1 --------YAB1  <---------WOX13(1)     <---------TOE1(2)  --------->AHL20(2)      ---------->ID1------ ------->ICU4--------->ATHB12        <---------MYB52(1)  <---------AHL20(2)     <--------------------   aattattgggaatgatgattgttgtctcgtcactgtctcgttcgttactatcacggtaaaaaaataaaaatccttccttttttgtttttttcctttgcat  19123100                                                                           <----------DOF2                                                                     --------->ARR14(2)           <--                --------->LBD16           <----------DOF2            <-----------ARR10            <--                <------NtERF2       <---------HSFB2a(2)              <---------ARR14(2)           --- --------LBD16 --------->ANAC58     --------->HSFB2a(2)              --------->GLK1(2)            --- ->TEIL        --------->ANAC58 <----------DOF2          <---------MYB52(1)<---------DAG2        <--- ----ANAC81   <---------LBD16   <---------DAG2    ----------->HVH21 <---------GLK1(2)            ----   cttcggataaaaaatgcccgcacaaaatttcaaactttttggaactttggaaatgacccgatagttttgagaatctcctttttcgacccctatgtttcaa  19123200                                     --------->LBD16                                    <------NtERF2                              <---------AHL20(2)                                 ------->GAMYB                                 --------->AHL20(2)                                --------->ANAC46                               <---------AHL20(1)         ----------------------->TaNAC69(2)                                    --------->AHL20(1)   --------->ZAT18              --------->ANAC58                          <---------AHL20(2)   <---------ZAT18    --------->ANAC55(2)                                 --------->AHL20(2) -------AHL20(1)      --------->ANAC46            --------->ARR11(3)      --------->AHL20(1) -------AHL20(2)      --------->ANAC58  <---------RVE1(1)                 <---------AHL20(1) ------>AHL20(2)      --------->ANAC58 <---------MYB52(1)              --------->YAB1 ------>AHL20(1) <----------DOF2--------->ANAC58  <---------ARR11(3)  <---------YAB1        <-------- ------ATHB12<-----------GT1 <-----------GT1   --------->YAB1<---------ANAC58 --------->AHL20(2) ----->AHL20(2) <---------DAG2<-----------GT1 <---------YAB1 <---------ANAC58 <---------AHL20(2)   taaattgcactattgtcacctttcacgaaatttaacgccccgatatttatgagaacttctgtttcgagcctgataataaaataaattgcatatttatcca  19123300                                              <---------CCA1(2)                                         ------->GAMYB                                        <---------MYB55(2)                           --------->MYB52(1)                                        --------->MYB46(3)                           <---------ICU4                                       ------>MYB46(1)                        --------->ANAC46                                       ------>MYB83                         --------->REM1(1)                                       -------->P                           <---------ALFIN1                                     --------->AtMYB61                     <---------ZAT14    <-----------GT1<----------DOF2  <---------MYB52(2)                    <---------ALFIN1 ---GT1            <---------DAG2   --------->MYB46(3)      <----------DOF2--------->ZAT14   actatttcacaaatcacaaaacttttcgaaactttgaaaccaacccccatatttttgagagcctttgtttctagccctacacttcaataactgcattttc  19123400                                                      <---------ZAT14                                                      --------->ZAT14                                                      <---------ZAT18                                                <-----------GT1                                     --------------------->WRI1                         ----------->GT1                                    --------->ANAC55(2)                   --------->AHL20(2)       <-             <-------TEIL  <---------ARR11(3)   --------->YAB1            <---------AHL20(2)       --      <---------YAB1<-----------GT1 <---------ANAC55(2)                  --------->AHL20(2)      <---      ----------->GT1    <---------MYB52(1)    <---------YAB1      <-----------GT1   ---------->DOF2   ttctcgtgatgaaaatacattttttccattatctcattacatacttcttatcacagtctactagtctatattccatttaatcaacgagaaagctaaattg  19123500  Previous    Next  AGI:  At1g51550.1    Description:  F-box family protein. Identical to F-box/Kelch-repeat protein At1g51550 [Arabidopsis Thaliana] (GB:Q9C8K7;GB:Q681W1;GB:Q8LAD5); similar to LKP2 (LOV KELCH PROTEIN 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G18915.1); similar to LKP2 (LOV KELCH PROTEIN 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G18915.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN68359.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-lik Range:  from: 19120700    to: 19123039    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g51560.1    Description:  FMN binding. similar to FMN binding [Arabidopsis thaliana] (TAIR:AT3G21140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41664.1); contains InterPro domain FMN-binding split barrel, related (InterPro:IPR009002); contains InterPro domain FMN-binding split barrel; (InterPro:IPR012349); contains InterPro domain Pyridoxamine 5' (InterPro:IPR011576) Range:  from: 19123303    to: 19125606    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version