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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
CCA1(2)
--------->
PCF2
<---------
TCP20
<---------
TCP15(1)
<---------
ZAT6
<-----------
HVH21
----------->
GT1
------>
ZmHOX2a(1)
----------------->
AGL1
<---------
ANAC46
--------->
ARR14(2)
----------->
RAV1(2)
<---------
ANAC58
<---------
HSFC1(2)
------->
TEIL
<---------
ANAC58
<---------
HSFB2a(1)
-------
<---------
YAB1
--------->
ZAT18
<---------
ZAT18
--------->
HSFB2a(1)
<------
-------
DOF2
<---------
ZAT18
<---------
LBD16
--------->
HSFC1(2)
<---------
YAB1
tttgttatgtttaagtagaaagtgtac
ctgaagagttaactcagggaacttgctggtttcttcttggacgattcctcggtcccatttcttattcaagatt
19070000
--------->
YAB1
<---------
YAB1
--------->
YAB1
--------->
ANAC58
<---------
ICU4
--------->
YAB1
-------->
HAHB4
--------->
ICU4
<---------
YAB1
--------->
YAB1
<---------
ATHB12
<-----------
GT1
<---------
ICU4
------->
GAMYB
--------->
ATHB12
--------->
ICU4
-->
ARR11(3)
--------->
MYB46(3)
------>
ZmHOX2a(1)
<-----------
RAV1(2)
<--------
---
ARR11(3)
<------
ZmHOX2a(1)
--------->
ANAC58
<---------
YAB1
<---------
TOE2(3)
tcaacccaattatcatcaggaaccattgagttaccataagctatctcagttcctacagaagtaatgataacatcaggggttaacaaaggtttctcttttc
19070100
--------->
TOE2(3)
<---------------
AtSPL8
<---------
ETT(2)
--------->
TOE1(3)
<---------
ANAC58
<---------
ANAC58
--------->
AHL20(2)
-
<---------
ANAC46
<---------
O2
--------->
AHL20(2)
<
<---------
ANAC58
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
ATHB12
<
--
DOF2
<---------
At4g35610
<---------
ANAC46
--------->
ANAC46
---
tcagtttcttgtacattgtttgagctcttcctgttgagaaaacaagaagagagtcgtgtcgataagcgtcttcccacaatgaattaaacctcaatagagc
19070200
<----------
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(3)
<
--------->
ARR14(2)
<
--------->
GLK1(2)
<
--------->
ARR11(3)
-----
--------->
ARR14(3)
<----
<---------
ARR11(3)
<-----
<---------
ARR14(2)
<-----
<------
ZmHOX2a(1)
----------->
GT1
<-----
<---------
TOE1(2)
------->
TEIL
---------->
DOF2
------
<---------
LBD16
-------->
P
------------------------>
ANAC81
------
-------->
ARR14(2)
--------->
ICU4
--------->
ANAC58
--------->
YAB1
---------
ARR14(2)
<---------
YAB1
--------->
ANAC58
--------->
GLK1(2)
---------
GLK1(2)
--------->
YAB1
---------->
DOF2
<------
ZmHOX2a(1)
-------->
ARR10
<---------
YAB1
--------->
YAB1
--------->
MYB52(1)
------
tagattctcaggatctttatgatgatcaac
ctgcaaaatcaaaagcaaaagaaaaaactcaaaatcgttgttctgttcttaacagaggaagaatcaagat
19070300
--------->
TOE2(3)
<---------
At5g28300
<--------
HAHB4
<-----------
GT1
--------->
YAB1
--------->
MYB46(3)
---------
ANAC58
--------->
ATHB12
<---------
At5g28300
---------
ANAC58
===============================
HOX2a_HOX2a
--------->
YAB1
---------
ANAC46
------>
ZmHOX2a(2)
<-----------
GT1
---->
CCA1(2)
============================
HOX2a_HOX2a
--------->
ATHB12
-----
GLK1(1)
=============================
HOX2a_HOX2a
<---------
ICU4
----
ARR14(2)
================================
HOX2a_HOX2a
<--------
HAHB4
----
ARR11(3)
<------
ZmHOX2a(2)
<---------
ARR11(3)
<
----
GLK1(2)
<---------
ARR14(2)
--------->
ARR11(3)
------------>
CBF
<
--->
ARR14(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
--------->
ICU4
--
--->
ARR11(3)
<---------
ARR11(3)
--------->
ALFIN1
--------->
At4g35610
<---------
TOE2(3)
<-
--->
ARR11(1)
<---------
ANAC46
<---------
YAB1
<------
ZmHOX2a(1)
<---------
ATHB12
<------
ttgcgtttttac
catggtttcgtcaagatcggagactatcattagacgaggaggagatgttaaccgctccat
cattacaatctaagattagataaacttt
19070400
<---
<---
<------
ZmHOX2a(2)
===================
---------->
DOF2
<---------
ARR11(3)
--------->
ICU4
--------->
ARR11(3)
<-
<------------
CBF
---------->
DOF2
----
--------->
ATHB12
<---------
MYB59
<------
---------
YAB1
--------->
YAB1
<---------
WRKY18(1)
<---------
GLK1(2)
------
ZmHOX2a(2)
--------->
WRKY38(1)
--------->
ARR14(2)
------->
ARR11(3)
--------->
WRKY12
--------->
At4g35610
--------
ARR11(3)
--------->
AHL20(2)
----------->
HVH21
<---------
ARR14(2)
----
DOF2
--------->
YAB1
<---------
AHL20(2)
<----------
DOF2
<---------
At4g35610
agatcattggagtcataaagataagttttttttaatatcaaatcgaaggaaacgattcaaaaaatgggttcctttgacctaaagatcacagcagatttgg
19070500
--------->
DAG2
<---------
ZAT6
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
=========================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<---------
AGP1
----------->
GT1
--------->
AGP1
<------------
CBF
---------->
DOF2
--------->
ARR11(3)
--------->
ICU4
------
GLK1(2)
--------->
ARR14(2)
--------->
ANAC58
------
ARR14(2)
<---------
ARR11(3)
--------->
ANAC58
=================
HOX2a_HOX2a
--------->
CCA1(2)
----------->
RAV1(2)
--------->
ANAC58
------
TEIL
==========================
HOX2a_HOX2a
<------------
CBF
--------->
ANAC58
----->
ARR14(2)
<----------
DOF2
<---------
HSFB2a(2)
<---------
TOE2(3)
---------->
DOF2
---------------
WRI1
<---------
TOE2(3)
---------->
DOF2
----------->
GT1
<------
ZmHOX2a(1)
attcgtaaaaggaggaaactttgacgataagatctagaggtaaagggtatttgagattgagaaaaacctgaggaatgcgaaagcaagaattggtttgtga
19070600
<--------
<---------
DAG2
<----------
DOF2
--------->
ALFIN1
--------->
AHL20(2)
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
At4g35610
---------->
ID1
<-----------
GT1
<---------
ZAT2
<-----------
GT1
<-----------
GT1
--------->
ZAT2
--------->
AHL20(2)
<---------
AHL20(2)
<------
NtERF2
------------>
CBF
<---------
AHL20(2)
<----
--------->
ANAC46
--------->
ANAC58
<---------
AHL20(2)
<----
------->
TEIL
--------->
MYB52(1)
--------->
ANAC58
--------->
AHL20(2)
-----
tgagaatgaatttgagagagcaagagtgctaacgcagcgagcagagcgggggaagaacaagtcaattttttcctcatattaatttaaactttttttattt
19070700
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<-
--------->
AHL20(2)
<---------
AHL20(2)
<---------------
AtSPL3
<-----
<---------
AHL20(2)
<---------
YAB1
--------------->
AtSPL8
--------->
YAB1
<---------
AHL20(1)
<---------
AHL20(2)
<-------
MYC3
<---------
AHL20(2)
-------
-
AHL20(2)
--------->
LBD16
------->
MYC3
--------->
AHL20(2)
<------
-----
AHL20(1)
--------->
ANAC58
--------->
ANAC46
--------->
AHL20(2)
<------
-----
AHL20(2)
--------->
ANAC58
<-----------
GT1
--------->
ICU4
<---------
AHL20(2)
---->
AHL20(2)
--------->
ANAC46
<-----------
RAV1(1)
<---------------
AtSPL8
<---------
AHL20(2)
tattttatttttttccacgaaatattattttgtttatgacttatgttgtcaatttttccacgttgttgtacttatttaattaattaaataatagtatata
19070800
--------->
ARR14(2)
<---------
ARR14(2)
--------->
YAB1
----------
GT1
<---------
YAB1
--------->
AHL20(2)
----
AHL20(2)
<---------
ICU4
<----------
DOF2
--------->
YAB1
<
-->
ARR11(3)
--------->
YAB1
<---------
DAG2
----------->
GT1
<---------
YAB1
<
---
ARR11(3)
--------->
ICU4
<---------
ANAC55(2)
------->
MYC3
<---------
ICU4
<----
---
AHL20(1)
<---------
ATHB51
--------->
AHL20(2)
------>
ZmHOX2a(1)
<-------
MYC3
--------->
ICU4
-----
tttacaatatgacaattatgacatattcgttttattacataaaactttttcctctaatttcaatttcaacgtgttaaaaataaaaattattcttgtattt
19070900
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AGI:
At1g51420.1
Description:
sucrose-phosphatase, putative. similar to sucrose-phosphatase 1 (SPP1) [Arabidopsis thaliana] (TAIR:AT2G35840.1); similar to sucrose-phosphatase 1 (SPP1) [Arabidopsis thaliana] (TAIR:AT2G35840.2); similar to sucrose phosphate phosphatase [Malus x domestica] (GB:AAS79792.1); contains InterPro domain Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679); contains InterPro domain HAD-superfamily hydrolase, subfamily IIB; (InterPro:IPR006379); contains InterPro domain Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:I
Range:
from: 19068436
to: 19070372
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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