Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               *TSS                                                          <---------SPL7                                                         <---------DEAR3(2)                                                        <---------RAP2.6(2)                                                 <---------ARR11(1)                                                 --------->ARR11(3)                                                 <-----------ARR10                                                 <---------ARR14(2)                                                 <---------ARR11(3)                                                 --------->ARR14(2)                                                <---------CCA1(2)                                                --------->GLK1(1)                                           --------->ANAC55(2)                                           --------->ANAC58<---------MYB55(1)                                           --------->ANAC58<--------P                               -                     <---------MYB46(3)    <---------ANAC55(2)                                      <                     ----------->GT1       <---------RAP2.6(2)      ----------->HVH21               <            <-------TEIL                  <---------LBD16<---------MYB46(3)                         <  --------->ANAC58 <---------ANAC46       <---------At5g28300<------MYB83                           <  --------->ANAC58 <---------ANAC58       --------->RAP2.6(3)<------MYB46(1)                        -  --------->ANAC46 <---------ANAC58     <---------ARR14(2)<---------MYB52(1)                        - -----------GT1<---------At4g35610      --------->ARR14(2)<-------GAMYB                             < ----->GT1 --------->CCA1(2)            <---------MYB52(1)<------NtERF2                             <   ttatacgacatagatacagttgctggttaaatagcaaactcagttacggcatatcttggcggtaggcattgtgacacagactggagcatacttcttcttg  19055900                                                                  --------->At4g35610                                                                  ----------->RAV1(2)                                                                  <---------At4g35610                                                                  <---------ZAT2                                                            <---------At4g35610         =============HOX2a_HOX2a                                                            ----------->RAV1(2)         ------>ZmHOX2a(2)           ------>ZmHOX2a(1)                            --------->ANAC46<---------ZAT2 ==============HOX2a_HOX2a <---------GLK1(2)                                 <------ZmHOX2a(1)    --------->ZAT2 <------ZmHOX2a(2) -------->At4g35610                          --------->At4g35610  --------->ZAT2      <---------ARR11(3) ------NtERF2                                <---------At4g35610<-----------RAV1(2)   --------->ARR14(2) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->TOE2(3)  --------->ZAT2   --------->REM1(2) ---------ZAT2 <----------DOF2           --------->TOE1(3)  <---------ZAT2   --------->ZAT14 ---------At4g35610                      <---------DAG2--------->ZAT18  <---------At4g35610 -------->HSFC1(2)                       --------->AtMYB61  --------->At4g35610       --------->ARR11(3) -------->HSFB2a(1)                    ------>NtERF2 --------->At4g35610--------->At4g35610 ---------HSFC1(2)         --------->At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------ARR14(2) ---------HSFB2a(1)   ---------->CDC5 <---------ALFIN1 <---------ZAT14<-----------RAV1(2)     ------>ZmHOX2a(1)   gcagcttctgttcctctctttggctcatcgtctgccattgccaccttagctaaggagcacacagctgcagctgcagctgtgaagacaagatccctcctca  19056000                                                                <---------ALFIN1                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               --------->MYB46(3)                                                             <---------WRKY18(1)               <-----                                                            --------->WRKY12                   ------                                                            --------->WRKY38(1)          <---------ANAC58                                                   --------->LBD16   --------->ALFIN1    <---------ANAC46                                       <---------ANAC46   <----------DOF2           <---------MYB46(3)                               <---------ZAT2      --------->HSFB2a(2)              <-----------RAV1(1)                               --------->ZAT2      <---------HSFB2a(2)            --------->At4g35610                          <---------HSFB2a(2)<-----------GT1--------->WRKY45      <---------At4g35610                <---------ANAC58   <-------GAMYB  <---------LBD16    <---------MYB52(1)  <---------ANAC58                <---------ANAC58  <---------MYB46(3)--------->LBD16 <-----------HVH21<-------GAMYB   tcttcatgctctgttcttgcttcttgttctccaagctggttgtgttttcactcccggaggctttgaccaccgtgaggcttcgtctgctgttgctggagat  19056100                                                                                         ------>ZmHOX2a(2)                                                                                       <---------ARR11(3)                                                                                  ------->MYC4                                                                                  ------->PIF5                                                                                  <-------MYC4                                                                                  ------->MYC2                                                                                  <-------MYC2        --------->HSFB2a(1)                                                       <-------MYC3        <------MYB46(1)                                                           ------->MYC3        <------MYB83                                                              <-------PIF5        <---------HSFB2a(1)                                                      --------->O2     <---------MYB52(1)                                                          <---------O2     <------NtERF2                                  ------>NtERF2                --------->TGA1a    --------->LBD16                                <---------bZIP60(1)           <---------TGA1a    <---------SPL7                                 --------->ANAC58              ====================    <---------RAP2.6(3)                            --------->ANAC46             <---------TOE1(2)   --------->ATERF1(2)                             --------->bZIP60(1)         <------------OsbHLH66   <---------ATERF1(2)                             --------->ANAC58        --------->GLK1(1)   --------->ETT(1)                             ----------->HVH21          <---------GLK1(1)   <---------HSFB2a(2)                       --------->ATHB12             --------->ARR14(2)   --------->HSFB2a(2) ----------->GT1      <---------YAB1                <---------GLK1(2) <--------  <---------LBD16     <------MYB46(1)<-----------HVH21              --------->MYB52(2) --------->ARR11(3) ----ARR11(3)         <------MYB83 --------->ARR11(3)             =========================MYC_MYB --->ARR11(3)       <--------P     <---------ARR11(3)             <--------P   <---------ALFIN1   gtttgccggaaggtttgagacggtagggagaaatgaagatgtcatggtcattgacgccattgcaattggtaagttggattcccacgtgtgatctctttat  19056200                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                              ------>ZmHOX2a(2)                                 <---------WOX13(1)         --------->ARR11(3)                         <---------ANAC58                <---------KAN4(2)                    --------->At4g35610              <---------LBD16         <---------ANAC46<---------ANAC46           --------->ALFIN1 <---------ANAC58 <-----------TBP         <---------ANAC58<---------ANAC58          --------->ALFIN1  <---------ANAC58------->TEIL ==bZIP_DOF      <---------At4g35610              *TSS<---------ANAC46------>ZmHOX2a(1)<---------AHL20(2) --DOF2  <---------ANAC58<---------bZIP60(2)   ---------->DOF2===============HOX2a_HOX2a   ctctctctgtttcttgtttatctgatgacttggtgatggattgtgttttaaaagttggggatgatccagttccttatccaaaatatgaatttatagcaaa  19056300           ------->MYC4           ------->MYC2           <-------MYC4           <-------PIF5           ------->PIF5           <-------MYC2           <-------MYC3           ------->MYC3          <--------ABF1          --------->TGA1a          --------->bZIP60(2)          <---------TGA1a          <---------O2                                                   <---------ZAT6          <<<<<<<<<<HY5                                           <---------ANAC58          <<<<<<<<<<AtMYC2                                        <---------ANAC58     --------->MYB59          --------->ANAC55(2)                                     <---------ANAC46 --------->ARR11(3)          <---------ANAC55(2)           --------->YAB1     <----------DOF2   <---------HSFB2a(2)          --------->O2           <-----------GT1         --------->HSFC1(2)  --------->HSFB2a(2)          <<<<<<<<<<ABI5    ------>ZmHOX2a(1)            <---------HSFC1(2) <---------LBD16<-------TEIL     <-----------GT1       --------->TOE2(3)     --------->ZAT6<----------DOF2--------->LBD16       <   tgggtttttgccacgtgtctctgtgctatccttattttccaaacaaaatgaacactagaagctttctttcttgtagtgtccggaagaactaggtccattc  19056400                                                                                           <---------DAG2                                                                                           <---------                                                                                          <---------DAG2                                                                                      --------->ANAC58                ----------->GT1                      --------->TOE1(2)           <---------MYB46(3)                <----------ID1              --------->ANAC58               <-----------HVH21               --------->DAG2               --------->ANAC58              --------->WOX13(1)             ---------->DOF2    <-----------GT1   --------->MYB52(1)--------->ZAT14   --------->ANAC58 ---------GLK1(2)    ---------->DOF2      ---------->DOF2          <----------DOF2<-----------HVH21   ttgattcttgggcaaaaaaggtcaaaagcccaattcacttcttcgaaagccaaaacggacgagtagtcactttagtcagtcagtggtcacgacctttttc  19056500                                 <------MYB83                                 <------MYB46(1)                                --------->MYB111(2)                                <---------DEAR3(1)                                --------->MYB46(2)                                <---------MYB46(3)                                --------->MYB111(1)                                --------->MYB59                                            <---------                               <--------P                                                 ------>ZmHOX2a(2)                               <---------MYB55(1)                                        <---------RVE1(1)                             <------MYB83                                                <------ZmHOX2a(2)                             <------MYB46(1)                                            <---------ARR11(3)                            --------->MYB111(1)                                         --------->ARR14(2)                            <---------TOE2(3)                                           --------->ARR11(3)                            --------->MYB46(2)                                 <---------------AGL15                            --------->MYB59                                   <-----------------AGL3                       --------->AHL20(2)                                     <-----------------AGL2                       --------->AHL20(1)                                     =======================                       <---------AHL20(2)                         --------->DAG2        <---------ARR14(2)    --------->MYB52(1)--------->AHL20(2)   <-----------GT1       ---------->DOF2       <------ZmHOX2a(1) -DOF2                <---------AHL20(2)<---------YAB1       --------->AHL20(2)--------------->AGL15   tggcccaaacagaaactaatagaattaaattaggtaggtgctattattccattttcaaaacaatataaaaaggggttattgctaaaataggatcttttta  19056600                                                          ------->TEIL                                             <---------ANAC55(2)   --------->AHL20(2)                        --------->ANAC55(2)               --------------------->WRI1   <---------AHL20(1)                 --------------->AGL15             <---------ARR14(2)   <---------AHL20(2)                 <---------------AGL15             --------->ARR14(2)     <<<<<< -DOF2         --------->MYB59       <-----------------AGL1             ------->TEIL        <<<<<<<<<TBF1 =====================================================MADS_MADS     <---------TOE2(3)   <-----------GT1   gacaaaaaatttgaaattaggcacttgtctatttgacttacaagaataggtattttcatgtatttgaattgacgaatttgcccttgagtttttcttcttc  19056700                                                           --------->At5g28300                                                          ----------->GT1      --------->AHL20(2)                                                       --------->GLK1(2)       <---------AHL20(2)                                                    --------->LBD16          <---------YAB1                                                   --------->HSFB2a(2)      --------->TOE2(3)                                                   --------->HSFC1(1)      --------->YAB1                                                   --------------->AGL15   --------->ATHB12                                                   <---------HSFC1(1)      <--------HAHB4                                                   <---------HSFB2a(2)     <---------ICU4                                                  ----------------->AGL1  --------->ICU4                                                  <---------LBD16         <---------ATHB12        ---                             <------------------------ANAC81          --------->AHL20(2)   <---------ARR14(2)           <<<<<<<<<TBF1     <----------DOF2    <-----------GT1       <---------AHL20(2)   --------->ARR14(2) <<<TBF1<<<<<<<<<TBF1   <<<<<<<<<TBF1 <----------DOF2 <---------GLK1(2)   <---------YAB1   --------->GLK1(2)   ttcatgcttcttcttcttcatcgttcttcttctttcttctcttttttttttttccagaaactgtaaatccattttaatcattaaaatttagagaatccaa  19056800  Previous    Next  AGI:  At1g51400.1    Description:  photosystem II 5 kD protein. similar to PSBTN (photosystem II subunit T) [Arabidopsis thaliana] (TAIR:AT3G21055.1); similar to unknown [Brassica rapa] (GB:ABD91572.1); contains domain PD030057 (PD030057) Range:  from: 19055691    to: 19056250    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g51402.1    Description:  unknown protein Range:  from: 19055861    to: 19057202    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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