Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------LBD16                                                                   <-----------HVH21                                                             <-----------HVH21                                                             ------>NtERF2                                                             <---------ATERF1(1)                                                            --------->DEAR3(1)                                                           --------->RAP2.3(1)                                                           <------NtERF2                                                          <---------RAP2.3(1)                                                          <---------ATERF1(1)                                                         --------->DEAR3(1)                                                         <---------DEAR3(1)                                                        <------NtERF2 --------->MYB52(1)                                                        --------->ATERF1(1)                                                       <---------ATERF1(1)                                                       ------>NtERF2----------->HVH21                                             ------->GAMYB------>NtERF2--------->At4g35610                                             --------->TOE2(3)--------->ATERF1(1)                                            XXXXXXXXXXXXXXXXXXXX>MIR4228                                          ------->GAMYB<-----------HVH21    --------->GLK1(1)                                         <---------MYB111(2)<---------DEAR3(1)      <---------ARR11(3)                                 --------->LBD16      <---------DEAR3(1)   <---------GLK1(2)         <---------ARR14(2)    <---------LBD16     --------->DEAR3(1)<---------WRKY38(1)         --------->ARR14(2)<-----------HVH21--------->MYB46(3)<------NtERF2--------->ARR14(2)        <------ZmHOX2a(1) --------->AtMYB61-------->P --------->DEAR3(1) --------->LBD16      ------>ZmHOX2a(1) -----ATHB12           <-----------GT1   --------->MYB46(3)--------->ATERF1(1)    <---------At4g35610   cgatacttcaggattcactgagatttcaccatcaccggaaacaacaacctccatcgccgtcgccgtcgcagtcaccggaatttcagcatcttcgtcctct  18949000                                                                                       ----------->GT1                                                                                   <---------MYB46(3)                                                                                   --------->MYB55(2)                                                                                  <---------AtMYB61                                                                                 <---------MYB52(1)                                                                                 <-------------------                                                                                 <-------GAMYB                                                                               <---------ANAC46                                                                               <---------DREB2C(2)                                                                               <---------At1g77200                                                                               <---------DEAR4(1)                                                                               <---------DEAR3(1)         --------->LBD16                                                       --------->ETT(1)        --------->HSFB2a(2)                                                  <-----------HVH21        <---------HSFB2a(2)                                                 <-----------RAV1(1)        <---------ANAC46                                                <---------ANAC58      -------       <---------LBD16                 ---------->DOF2                  <---------ANAC46      -------      --------->MYB52(1)          <---------ZAT6<---------REM1(1)       <---------ANAC58    ---------  <-----------GT1                 --------------->AGL15             <-----------HVH21<---------ANAC46 <-----------GT1                  ----------->GT1              <---------TOE2(3)<---------DEAR3(2)   gttttaacttccggaggtttcttctcagttccatcactgttaaaagtatggtgaaggaaactatcaacgttgtcgcttgtgtcggtggtttgtaaaaagc  18949100      --------->CCA1(2)      --------->ARR14(1)     <---------GLK1(2)                                                                   --------->ATHB12     --------->ARR11(1)                                                                 <---------YAB1     --------->ARR14(2)                                                        ------->TEIL     <---------ARR14(2)                                                     --------->ANAC58   ----------->ARR10                                                     --------->TOE1(2) <---------WOX13(1) --WRI1                                                                <---------------AtSPL3<------MYB83 -->ANAC58                                                             --------->DAG2   --------->ICU4 -->ANAC58                  <---------MYB46(3)              --------->ANAC46--------->ANAC58 <------MYB46(1) ->DOF2<-------TEIL  <------ZmHOX2a(1)             <---------WOX13(1) ---------->DOF2 <---------At4g35610   cagataagattcgctcagtttcaggacttgtgggtcgatctaaaaactcttcgattgattcaccgaaactcgaaaagtacgaacttggtgctgattggta  18949200                <---------ANAC58                                     <---------YAB1                <---------ANAC58                                 <---------GLK1(1)                <---------ANAC46                                 --------->GLK1(1)              --------->GLK1(2)       ------>ZmHOX2a(2)     <---------ANAC58         ====================================HOX2a_HOX2a    <---------ANAC46         ------>ZmHOX2a(1)          --------->ARR11(3)      <---------ANAC58         --------->LBD16          <---------YAB1       <---------bZIP60(2)             <----------DOF2    --------->WOX13(1)      <---------ANAC46           <-----------RAV1(1)            <---------ANAC58  <---------ATHB12       <-----------RAV1(1)           <---------REM1(1)              <---------ANAC58   acgaatcaatcctgagtttcttggtctctggtgttgatgatcgtggagaaggaagtgatgttgctggaattctgattccatcttagtagcttttgagttt  18949300                                                 <---------ANAC58                                             --------->HSFC1(2)                                             <---------HSFC1(2)                                             <---------HSFB2a(1)                                          <---------MYB52(1)                                         --------->LBD16     --------->At4g35610                                       <---------LBD16       <---------At4g35610                                      --------->MYB52(1)  <------NtERF2                                     --------->ANAC46    --------->LBD16                <---------YAB1                                     <---------ALFIN1    ------>NtERF2                 <---------AHL20(2)                             --------------->AtSPL8     <---------LBD16                --------->AHL20(2)                             --------------->AtSPL3    <---------LBD16                --------->AHL20(2)                  <-----------GT1  --------->AtMYB61--------->SPL7          --------->LBD16               <---------AHL20(2)--------->SPL7  <---------ANAC58           ------>NtERF2       -----        ----------->GT1  <---------MYB52(1)  --------->HSFB2a(1)           <---------LBD16  ---------     <----------DOF2<-----------GT1<---------ALFIN1<---------MYB52(1)     <---------LBD16   <--------   ctctcttctttggttatttttttctccgtttgcagtaccacaccggaagtttcgttcgccgggagatgagattgtttccggcgagaaattaaaattaaaa  18949400                                                              <--------P                                                            <------MYB83                                                            <------MYB46(1)                                                    ------->GAMYB                                                 =====================RAV                          <-     --------->TOE1(2)                           ----------->RAV1(1)        <---------AHL20(2)     -- ----->DOF2                                      --------->MYB52(1)<------------CBF               <-- >AHL20(2)                               <------ZmHOX2a(1) --------->MYB111(1)                    <-- -AHL20(2)           *TSS           <------ZmHOX2a(1)     <-----------RAV1(2)                   <----   aagagaacgtgagagaaacttatgtgcaagagagaagaggagaggaagaaacaacagagggcaggtagagattgggatttatttgtgatttgactaaaat  18949500                                                         ------->MYC4                                                         <-------MYC4                                                         ------->PIF5                                                        <---------TGA1a                                                        --------->TGA1a                                                        <---------O2                                                        <---------ANAC46                                                        --------->O2                                                        --------->PIF3(3)                                                        <---------PIF3(3)                                                       <<<<<<<<<<AtbZIP1                                                     ---------------->PIF3(2)                                                    ----------------->PIF3(1)                                                   --------->ANAC58                                                   --------->ANAC46                                                   --------->ANAC58                                                 <--------P                                                 =================MYC_MYB                                                --------->REM1(2)                                               --------->ALFIN1                                              ------->MYC4                                              ------->MYC2                                              <-------MYC3          --------->TOE2(3)                                              <-------MYC2          --------->TOE1(3)                                              ------->MYC3         --------->ANAC58                                              <-------MYC4    <---------TCP16(1)                                             <---------ANAC55(2)   --------->ANAC58                                             --------->ANAC55(2)   --------->ANAC46                                             <---------TGA1a  --------->PCF2                                             =====================bZIP_bZIP                                             <---------ANAC46 <---------PCF5                            --------->TCP20  =============MYC_MYB<---------ALFIN1  <---------TOE2(3) <---------DAG2          --------->ALFIN1    <--------ABF1--------->ALFIN1        --------->YAB1 <----------DOF2   <-----------GT1           --------->O2------->MYC2          --------->YAB1 --------------AGL15 <---------ANAC58        <---------O2<-------PIF5         <---------YAB1 ------------->AGL15 <---------ANAC58        --------->TGA1a <---------PCF2  --------->AHL20(2)------ ---------------AGL2 <---------ANAC55(1)----------->HVH21------->MYC3   <---------TOE2(3)--------->ANAC55(2) ---------------AGL1 <---------YAB1   <---------At4g35610<-------MYC3  <---------DOF5.7(2) ---------- -------GT1    <---------YAB1         --------->At4g35610<-------MYC2--------->DOF5.7(2) <---------ANAC55(2)   accctttatggtgtcttcttattacgagtggaacccttgatgctgacacgtgtaggccacgtggggaccacgttaacatttttataatgttatgtaacag  18949600                           --------->ARR11(3)                           <---------AHL20(1)                           --------->AHL20(1)                         --------->ARR11(3)                       <---------YAB1                         --------->AHL20(1)                      <---------AHL20(2)                  <---------HSFB2a(2)     <---------AHL20(2)   <---------YAB1                  --------->HSFC1(1)     --------->AHL20(2)  <---------ICU4     <------MYB46(1)    --------->AHL20(2)   <---------AHL20(1)              <---------YAB1----------->GT1           ----    <---------AHL20(2)   <---------ARR11(3)       <-----------GT1<---------AHL20(1)        --------->WOX13(1) ----->GT1        --------->HSFB2a(2)    <---------AHL20(1) --------->ICU4      <------MYB83 <------- ->HVH21          <---------HSFC1(1)     <---------AHL20(2) <---------YAB1     --------->MYB59   <---   tgaaaaataaatattgttttcgagaaaaatattttgatgtcaattttttttttttcgatgtgattattattttttgtaaatttggtatacttccaatcag  18949700                                                                                                  ---                                                                                         --------->YAB1                                                                                        <---------YAB1                                                        <---------TOE2(3)         --------->AHL20(2)                                               <----------DOF2                    <---------AHL20(2)       <---------AHL20(2)                 <---------At4g35610        <---------DAG2    <---------AHL20(2)      --------->AHL20(2)                  --------->At4g35610        <----------DOF2   --------->AHL20(2) ----->ALFIN1               ---------->DOF2    <---------DAG2  --------------->AtSPL8 --------->YAB1 --ATHB12          ---------->ID1    --------->RVE1(1)<---------AHL20(2)      <---------YAB1<-------- --------RAV1(1)<-----------GT1  >>>>>>>>>>GT-3b     <---------AHL20(2)   --------->TOE2(3) ---------   tgtggctattaaatgatttttctcgtttttcaaagaaaaatatcagcagcttttttttaatgttttttggactttatcttatttttaattttaataaatg  18949800                        -------->HAHB4                        --------->ATHB12                       <---------ATHB12                       <---------YAB1                       --------->ICU4               <--------ATHB1               --------->ATHB12               -------->ATHB1                                                                  ------               <---------ICU4            <---------AHL20(2)                                    ------               --------->ATHB51          --------->AHL20(1)                                   -------              --------->ICU4             --------->AHL20(2)                             =============              <---------ATHB12           <---------AHL20(1)    <---------AHL20(2)       <------------ ---->TEIL    <---------ATHB51        --------->YAB1           --------->AHL20(2)  --------->At4g35610 -AHL20(2)    <---------YAB1        --------->AHL20(2)         <---------YAB1---------->DOF2 -------- >AHL20(2) ------------>ATHB5     <----------DOF2     ------>NtERF2  <---------ANAC46--------->WRKY38(1)   aattttaaaatcagcaattattgaaatgattcagaacttttaataaaataaaacgacgactatatataattgtgggaattaaagctgttgacttataaag  18949900  Previous    Next  AGI:  At1g51140.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G42280.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80884.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 18947125    to: 18949421    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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