Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------AHL20(2)        --------->HSFC1(2)  ----------->GT1                      ---------->DOF2   --------->HSFB2a(2)  <---------YAB1                  --------->YAB1   <---------HSFB2a(2)--------->YAB1                   <---------YAB1 ----ATHB12      --------->AHL20(2)                  <---------ICU4 ->WOX13(1)     ----------->TBP                      --------->YAB1          <---------ANAC46   <---- -->CBF <---------HSFC1(2)<------------CBF          --------->ICU4--------->DAG2          <XXXXXXXXXX   acttactggaaacttcatataaaatcaaaattgaaaaaaaaaaactgaattcgaattatgaaaatcaaaaaggaatgaagcgggaacaaaaccttgggga  18930100                                                        ------>ZmHOX2a(1)                                                  --------->HSFC1(2)                                           --------->ARR11(1)                                           --------->ARR14(2)                                           <---------ARR14(2)                                          <---------HSFB2a(1)                                          --------->HSFB2a(1)                                          <---------HSFC1(2)                                         ----------->ARR10                                  <----------DOF2 <---------HSFC1(2)                                 <---------ANAC58 <---------HSFB2a(1)                                 <---------ANAC58 --------->HSFB2a(1)                           ====================================HOX2a_HOX2a         --------->YAB1    <------ZmHOX2a(2) <-------TEIL              --------->GLK1(2) -----ARR14(2)            <---------ARR11(3)--------->CCA1(2)          <---------ARR11(3)           < XXXXXXXXXXMIR829.2       --------->ARR11(3)--------->GLK1(2)          --------->ARR14(2)          --   tttagtttgaatcgtgatgaagaaggaagatcagagcttgagggagattcgaaatttcctcgcttcataacaaaatctgagaaatagatttgaaaaacag  18930200                                                      <---------ARR14(2)                                                      --------->ARR14(2)                                                      <---------ARR11(3)                                                      --------->ARR11(3)                                              <----------DOF2  --------->ANAC58       --------->ARR14(2)      ----------->GT1                ---------->DOF2  <-----------ARR10               <---------ARR14(2) --------->ZAT6     <---------MYB52(1)        <---------DAG2   --------->ANAC58     --------->LBD16 ---------ZAT14------------>MYB.PH3(1)     <------ZmHOX2a(1)   --------->ANAC46   <---------LBD16 --------->RAV1(1)----------->GT1--------->AHL20(2)  <---------CCA1(2)     ---------->DOF2  <--------   acaacactaggttacaaaaactgttactcgatgaataaaaaaagaggactttttcaaatcttcacacacaaatttcacaaagaacccggattcaattttt  18930300                                                                                     --------->MYB59                                                                                <---------RVE1(1)                                                                                <---------CCA1(1)                                                                               --------->ARR11(3)                                                                               <---------ARR11(3)                                                                               --------->ARR14(2)                                                                              =======================                    ----------->GT1           ----------->GT1                 =======================             ----------->GT1             ---------->DOF2        ---------->DOF2<---------ARR14(2) ---          <----------DOF2            <------NtERF2           ----------->GT1  <------ZmHOX2a(1)   --- -DAG2  <----------DOF2             ----------->GT1 <----------ID1      ---------->DOF2   -----------   gaaaattgggctctttggtaaaatgtaaaacgtttgggccgaaaaaagaagaaaaaaacaaaactgtaaagaggcaaagaggatattttggtaattcact  18930400             ------->TEIL            <---------CCA1(2)            <---------GLK1(2)          ------>ZmHOX2a(1)        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------ARR14(2)      --------->ARR14(2)      --------->ARR11(3)    --------->LBD16  <---------LBD16 <---------ANAC46                      <-----------GT1                --------->LBD16 <---------bZIP60(2)               <---------YAB1                    <---------ANAC46 ==============HOX2a_HOX2a     <---------MYB52(1)    --------->At5g28300           <---------YAB1 =============HOX2a_HOX2a     <-------GAMYB      --------->MYB52(1) ------>ZmHOX2a(2)              -- -------->TGA1             <---------At5g28300  ----------->HVH21 --------->ARR14(2)               -- -------->HVH21       -------->ATHB1--------->YAB1  ----------->GT1<------ZmHOX2a(2)    <---------MYB46(3) ------------>TaNAC69(2)  <-----------GT1 --------->TOE2(3)       <---------ARR14(2) <------------CBF   ctgacgcggatcctgaatctcgaattattcaccgttgattataacattatctaacggtgataaacagcgatccgcgtagtttcttcttattggttaagac  18930500                                                                 <-----------GT1           ----------        ----------->GT1                                         <---------YAB1           --------->ANAC46 ----->TEIL   <---------AHL20(2)              <----------ID1 <---------YAB1        <----------DOF2 ------->GLK1(2)    <---------LBD16         *TSS         <---------GLK1(2)        <---------ICU4    <   gaatctaaaacagtatataaactctggagaagatggagagagtccataacaacaaattcgattcttataactgtttccctctcatctttacacaaaagta  18930600                         --------->At5g28300                        ----------->GT1                     <---------ANAC58                     <---------ANAC46         <---------DEAR3(1)                     <---------ANAC58       <---------ARR14(2)                    --------->ALFIN1        --------->ARR14(2)                   <---------ARR14(2)   ------>ZmHOX2a(2)                  <------NtERF2        <------ZmHOX2a(2)                 --------->MYB55(2)   <---------ARR14(2)              --------->At4g35610                 <---------MYB46(3)   --------->ARR14(2)           ---------->DOF2                <--                <---------ANAC58      --------->ARR11(3)     --------->MYB46(3)                  ----                <---------ANAC46      <-----------ARR10      --------->REM1(1)                 <-----                <---------ANAC58      <---------AGP1       ----------->RAV1(1)               <------- >DOF2         <---------LBD16       <---------CCA1(2)  --------->ANAC58   ---------->DOF2 XXXXXXXXXX ---------YAB1 <-----------------------TaNAC69(2)       --------->ANAC58 --------->At4g35610 <-------   ttctaatcgatttcaatggcgggtcgtggtaaaacactcggatctgggtctgcgaagaaggcaacaacaagaagcagcaaagccggtctccaattccctg  18930700                                                        <---------ZAT2                                               <------MYB46(1)                                               <------MYB83  --------->LBD16                                               <---------MYB46(3)                                              <---------AtMYB61                  <---------HSFB2a(2)                                             <--------P <---------GLK1(1)        --------->HSFB2a(2)                                           <-----------RAV1(1)                   --------->HSFC1(1)                                           --------->ALFIN1<---------LBD16    <---------MYB52(1)                                          <-------MYC2  --------->GLK1(1) ------>NtERF2                                          ------->MYC3  --------->ZAT2   --------->ANAC46    <---------CCA1(2)                     ------->MYC2  --------->At4g35610 --------->DEAR3(1)      -   <---------SPL7                       ------->TEIL --------->LBD16     --------->DEAR3(1)        <-  <---------ANAC58                   --------->DEAR3(1) <---------At4g35610<------NtERF2        <----  <---------ANAC58        ----------->GT1 <-------MYC3<------NtERF2      --------->RAP2.6(2)   ------ -------MYB46(3)<---------ANAC58    --------->ANAC46--------->ETT(1)     --------->RAP2.3(2)   ------ ----->ALFIN1   <---------ANAC46  <----------ID1   --------->ATERF1(1)  --------->MYB46(3)     <----- ------RAV1(1)  <---------ANAC58  --------->ANAC46 <---------LBD16      --------->ERF1         ------ --ANAC58    <---------CCA1(2) --------->ARR14(2)  <------NtERF2        --------->ATERF1(1)   ------- XXXXXXXXXX>MIR841B*   ---------->DOF2<---------SPL7<---------ANAC46   <---------At4g35610 --------->ANAC46 --ANAC58 <---------TOE1(2)    <---------ARR14(2) ------>NtERF2        --------->At4g35610 <---------DEAR3(1)   tgggtcgtatcgctcgtttcttgaagaaaggcaaatacgccgaacgtgttggtgccggagctccggtttacttagccgccgttctcgaatacctcgccgc  18930800         =================================HOX2a_HOX2a ---------->GT1 --------TOE2(3)                                                     <---------WOX13(1) ------CDC5                                                       <---------YAB1                 <--- ----->RAV1(2)                      <----------DOF2             <---------ICU4                   <--- >NtERF2 ------>ZmHOX2a(1)         ------>ZmHOX2a(2)      --------->TOE1(3)                      <--- ----At4g35610                   <---------ARR11(3)       --------->TOE2(3)                      ---- --->At4g35610                   --------->ARR11(3)<---------HSFB2a(2)                          ----- -->DEAR3(1)                 <-----------GT1       --------->HSFB2a(2)       <---------LBD16    <----   tgaggtaattcctcttccctattcttcaaattttcgatcttttagttcaatttctataaaccctaattttgactgattttggggaaattttgaaaaatta  18930900                                                           <---------KAN4(2)                                                       --------->ANAC58                                                       --------->ANAC58                                                       --------->ANAC46       <------ZmHOX2a(1)                      <------NtERF2              --------->KAN4(2)        --------->ALFIN1 ---MYB46(1)      --------->ANAC46              --------->KAN4(1)        <------NtERF2 ---MYB83      --------->ARR14(2)               <---------KAN4(1)       <---------MYB46(3) ------ANAC55(2)  --------->ANAC58              --------->HSFB2a(1)    <---------DREB2C(2) ----->ANAC55(2)  --------->ANAC58              <---------HSFB2a(1)    <---------DEAR3(1) ---->MYB59<---------ANAC46                     <---------MYB46(3)     <---------ANAC46 -----TOE2(3)  <---------ARR14(2)            <------ZmHOX2a(1)  <---------AHL20(2)   ggtattggaattggctggaaacgcagcgagggataacaagaagacgaggattgttccaaggcatattcaattggcggtgaggaacgatgaagaattgagc  18931000  Previous    Next  AGI:  At1g51060.1    Description:  HTA10; DNA binding. Identical to Probable histone H2A.1 [Arabidopsis Thaliana] (GB:Q9C681); similar to HTA13, DNA binding [Arabidopsis thaliana] (TAIR:AT3G20670.1); similar to unknown [Populus trichocarpa] (GB:ABK94182.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 18930544    to: 18931314    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version