Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------ANAC58             --------->AHL20(2)      --------->ANAC58           ----------->GT1           --------->ANAC58               --------->YAB1  <---------AHL20(2)     <---------ANAC58                          <---------ATHB12   <---------HSFB2a(2)  --------->AHL20(2)     <---------ANAC46                        --------->YAB1       --------->HSFB2a(2) --------->AHL20(2) <-----------RAV1(1)                    --------->ZAT6      <---------TOE2(3) ------AHL20(2)     <---------ZAT6 <---------ALFIN1    <---------MYB52(2)  ------->TEIL          <---   ttatttaattgtgaagtaaatagtgttgcttaggtgaacaccctagacgaagagagaactaactctctaatcatatgtatttagatttctaaaacaaaat  18899600               <-------TEIL              --------->GLK1(2)              --------->ARR14(1)             --------->ARR11(1)                                                                 <----             <---------GLK1(2)                                      --------->YAB1          ---------             --------->ARR14(2)                                     --------->AHL20(2)     ------>ZmHOX2a(2)             <---------ARR14(2)  <---------AHL20(2)                <<<<<<<<<ARR2          <------ZmHOX2a(2)           ----------->ARR10     <---------YAB1              <-------TEIL                <---------AGP1   --------->ZAT6               --------->AHL20(2)         <---------GLK1(2)             --------->ARR11(3) ----TEIL<---------At4g35610    <---------AHL20(2)      <---------WOX13(1)               <---------ARR11(3)   tcatcacactaagcagattcggaactaattgtattttaattcaaaaaacatttagttgatagattcacaatcaaattgatttttaaaaatagatctcaat  18899700                                           ---------->ID1                                ------>ZmHOX2a(2)                                ======================HOX2a_HOX2a                               <---------RVE1(1)                               <------ZmHOX2a(2)                               =======================HOX2a_HOX2a                              <---------ARR11(3)                                    <----------DOF2                              <---------AGP1   ------>ZmHOX2a(1)                   <---------ANAC58       <----------ID1 --------->YAB1 <---------AHL20(2)                            <---------ANAC58   ---------->DOF2 --------->YAB1<----------DOF2                              <---------MYB46(3) -----ATHB12     ------->TEIL --------->ARR11(3)  --------->ICU4             <--------P       <------ --->CBF      <---------ATHB12--------->AGP1  <---------MYB59  --------->YAB1<---------WOX13(1)   aaatctaaagaaacaaatgaatcatcaaaatagatctttttatttgttcctaatttttagtttaatcaaaaccggtctggttgatgctttcaaaccggtt  18899800                                                                               <------NtERF2                                                                              --------->RAP2.6(2)                                                                              ------>NtERF2                                                                             --------->ATERF1(2)                                                                             <---------ATERF1(2)                                                                 <---------DAG2------------>CBF                                                                 <----------DOF2  <------------CBF                                                          <------ZmHOX2a(2)  <---------DEAR3(1)                                                         <---------ARR14(2)<---------RAP2.3(1)                                                         --------->ARR14(2)------>NtERF2                                                       <---------HSFB2a(1) <---------ATERF1(1)              <---------AHL20(2)                       --------->HSFB2a(1) --------->LBD16      <----         <---------MYB52(1)                            --------->HSFC1(2) <---------LBD16  --------->GLK1(2)  --------->ATHB12                                   --------->MYB52(1)   <---------RAP2.3(2)   -----  <---------ICU4    --------->GLK1(2)               --------->TOE1(2)     <---------RAP2.6(2) <------ --------->ICU4  ------------>CBF                  <---------MYB52(2)    <---------LBD16  --------->ARR11(3) <---------YAB1 <-----------GT1                 <---------ARR14(2)     <-----------GT1    <---------ARR11(3) ---MYB52(1)  --------->AHL20(2)           --------->ALFIN1------>ZmHOX2a(2)--------->ATERF1(1)<-----   gtgatgatttcggtatttaaacaatctgaaaatgttttggcaagagaggggaaacgaacgatccgagcttttttttccggcggcaattgggagattttgt  18899900           <------MYB83      <---------YAB1    --------->YAB1   <------ZmHOX2a(2)   <---------YAB1  --------->ARR11(3)  <---------ARR11(3)    <---------GLK1(2)                    <---------ANAC58 -----HSFB2a(2)      --------->HSFB2a(2)                     <---------ANAC58      --------->ANAC46 ---->HSFB2a(2)      <---------HSFB2a(2)                --------->ATHB12           --------->ANAC58 ---ANAC46 <---------MYB46(3)                     <---------ZAT18              <-----------GT1 ----LBD16 <------MYB46(1)                    --------->ALFIN1      <---------YAB1 --------->ANAC58   ggaagatcatagttggttctcttctcgattcttaggggttttagagacttggtgctcttgatttcgagtgatcatacagtattacaaggcatggacaaat  18900000                                   ----------->GT1                                   <------MYB46(1)                 --------->WOX13(1)<------MYB83                --------->MYB46(3) <---------ANAC55(2)                       --------------->AtSPL3          --------->GLK1(1)       --------->MYB59                           --------->At4g35610          <---------GLK1(1)      <--------P                            --------->ZAT6    <---------ANAC46   <---------ARR11(3)                            --------->MYB52(1)         <----  <---------MYB46(3)   <-----------ARR10                          --------->ANAC55(2)        <------- <---------AtMYB61-------->P     <---------MYB55(1)               <---------ANAC55(2)  <---------YAB1   cgagtggtttggatttcatcaaccagatgttcccagtaggtaacttaatttgttttttcttcgagtttaagtaacagtagccgaacattttgatcacgat  18900100                                                                                              <------                                                                                             <-------TEIL                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                           --------->ARR14(2)                                                                                           --------->ARR11(1)                                                                                           <---------ARR14(2)                                                                                           <---------GLK1(2)                                                                                         ----------->ARR10                                      <---------HSFB2a(2)                              <---------bZIP60(1)                        <---------ANAC58                                            ----------->HVH21                        <---------ANAC46          <---------CCA1(2)             --------->CCA1(2)                        <---------ANAC58   <---------HSFB2a(1)                 <---------ARR11(3)     --------->ATHB12   <---------ANAC55(2)<---------HSFC1(2)                  --------->ARR11(3) -----YAB1              --------->ANAC55(2)--------->HSFC1(2)          --------->AtLEC2--------->bZIP60(1) --YAB1                 <---------ANAC55(1)--------->HSFB2a(1)    <----------DOF2   ----------->TGA1   tatcgctagattggattttttcaaatgcgtgttttcgattacagaagcttctctatcttgtgttgagtcttttatgcaaaagatttgtgacgagattcgg  18900200                                                                          --------->bZIP60(1)                                                                          <---------bZIP60(1)                                                                        --------->YAB1      <--------                                                                        <---------ICU4     <---------TOE2(2)                                                                       --------->ICU4    --------->LBD16                                                                  --------->TOE2(3)     <---------ANAC46                                               --------->ARR14(2) --------->YAB1       <---------At4g35610                                               <---------ARR14(2)XXXXXXXXXXXXXXXXXXXX>MIR172A/B                                             --------->LBD16     XXXXXXXXXXXXXXXXXXXX>MIR172E                                            <---------HSFB2a(2) --------->ARR11(3)     <---------LBD16                                    ----------->GT1             --------->GLK1(2)   <---------At4g35610                              <---------WRKY38(1)    <---------ZAT6    <---------ATHB12--------->At4g35610 ---DEAR3(1)             <---------MYB52(1) --------->HSFB2a(2) <-----------ARR10   --------->At4g35610 >CCA1(2)              <---------MYB46(3)   --------->ANAC46    <---------ARR11(3) <-----------RAV1(1) >ARR14(1)          <---------MYB46(3)     <---------LBD16      XXXXXXXXXXXXXXXXXXXX>MIR172C/D<------ >GLK1(2)         <---------At4g35610--------->At5g28300 ---------->DOF2-------->HAHB4<---------ANAC46   cgagttgatgctaccattttagctgttgttagtcaacagggtaactccggaactagagctaaagaaaatcttaatgatgccatatgtgctgcggaggtta  18900300         <--------P                                  --------->ZAT14                         --------         <---------WOX13(1)                          <---------REM1(2)         <---------GLK1(1)   --------->ATHB12                                  <---------ZAT14           --------->GLK1(1) <-----------HVH21                             <-----------GT1      --------->AHL20(2)--------->YAB1- -MYB46(3) --------->ATHB12              <----------DOF2   <---------MYB52(1) <XXXXXXXXXXXXXXXXXXXXMIR2938 --P   <---------MYB46(3)      <------------------------ANAC81 ---------->ID1<------ZmHOX2a(1)<------   gtctgtcattggttgatttgtattgtcaagatgccattttcttcttttgtttctcttcacagtttgtcattttaacacaggaactctctcataagataca  18900400                                                                    <---------GLK1(2)            <---                                                                    --------->ARR11(3)           ----                                                                  ----------->ARR10             <----                                                    ----------->RAV1(1)                         <----                   --------->MYB46(3)  --------->ANAC58      --------->DAG2                    <-----   --------->AHL20(2)--------->MYB52(1)--------->ANAC46     ---------->DOF2                 <-------- ->CCA1(2)---------->DOF2  --------->ANAC58       <---------At4g35610                       --------- ---------->GT1--------->RAP2.6(2)     --------->ANAC58  --------->AHL20(2)              --------->MYB46(3) -TEIL  --------->YAB1     --------->ANAC58       --------->At4g35610      ---------->DOF2 <---------LBD16   agagataaaatcaaaagccgaacaaaccgaagcaatggtccaagacatatgcagcgacattaaaaagttagattttgcaaagaagaacataaccacggcg  18900500  Previous    Next  AGI:  At1g50970.1    Description:  membrane trafficking VPS53 family protein. similar to HIT1 (HEAT-INTOLERANT 1), transporter [Arabidopsis thaliana] (TAIR:AT1G50500.1); similar to hypothetical protein OsI_004731 [Oryza sativa (indica cultivar-group)] (GB:EAY76884.1); contains InterPro domain Vps53-like, N-terminal (InterPro:IPR007234) Range:  from: 18899991    to: 18903936    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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