Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      ------->TEIL <---------ANAC55(2) --------->ANAC55(1) --------->ANAC58 --------->ANAC58                                        <------NtERF2 --------->ANAC55(2)                                    ------>NtERF2 --------->ANAC46                                      --------->DEAR3(1) --ZmHOX2a(2)                                          ----------->HVH21<-----------TGA1 --->ARR11(3)                                          <----------ID1   <-----------HVH21 ----ARR11(3)                              <------ZmHOX2a(1)      <---------YAB1 >DOF2 --------->HSFB2a(2)              <---------HSFB2a(2)  ------->TEIL     <---------ZAT18 ---------->TaNAC69(2)          --------->CCA1(2)      <---------DEAR3(1)     --------->ZAT14      <-   catacgcatctagagagactggtgatggaaatggatatagatcgaggagcattagaggcgacgaacttattcttcgtcagagctctcagtagaacagttc  18883600                                                               ----------->GT1                                                    --------->ANAC58                                                    --------->ANAC46                     <------MYB83              --------->GLK1(1)                     <------MYB46(1)           --------->ARR14(2)                                   -                   <---------WOX13(1)          <---------GLK1(1)                                   --                 --------->ATHB12       --------->GLK1(1)    ---------->DOF2  *TSS                 <-              <---------At4g35610       <---------GLK1(1)---------->DOF2 <---------ZAT18   <------NtERF2 ----------TGA1 <---------YAB1    ------>ZmHOX2a(1) --------->ANAC58     --------->ZAT18 <---------DEAR3(1)   tcgtcatcgttttctcttctgattggtttctctctccttcagatttcagaattctcgcaaaaagaaagaaataagcgaactatggcaaacgtcgtcgttt  18883700                                                                         <------------CBF                                                                        -------->HAHB4                                                                        <--------ATHB1                                                                        --------->ATHB51         ----                                                                        --------->YAB1          <----                                                                       --------->ICU4           <----                                                                       <---------ATHB51         <----                                                                       <---------AHL20(2)      ------                                                                    --------->AHL20(2)       <------MYB83          <------------CBF              --------->DAG2              <---------AHL20(2)       <------MYB46(1)        <---------YAB1              --------->YAB1          ---------->DOF2               ===========     <---------ARR11(3)            <---------YAB1        <-----------TBP<---------ICU4    <------ZmHOX2a(1) ----------->CBF             <---------ANAC46          <---------YAB1  <---------YAB1   <---------TOE1(3) ------->YAB1             --------->ANAC46    <------------CBF     --------->ICU4       <---------TOE2(3) ----------GT1      <------ZmHOX2a(1)  ---------->DOF2 --------->ICU4--------->YAB1 <----------DOF2   ataacaatttcttattgctataggaactacgtcgtttatgataaagctaattgtatcatttttaaaggaattaataattgtttgaactttaaggatggtc  18883800                                                                                                   <-                                                                                                  ---                                                                                            <--------                                            ----------->HVH21                               <--------       <---------At4g35610                 <-------TEIL                                    --------->SPL7       <---------ZAT2                     --------->ARR14(1)                             <---------SPL7       --------->At4g35610               --------->ARR11(1)                            <-------------  <------ZmHOX2a(2)                      <---------GLK1(2)                             <---------TOE2(3) <---------ARR11(3)                    ----------->ARR10                           <---------AHL20(2) --------->ARR11(3)     <---------------AGL15                                     <---------ICU4----- ------>DOF2            --------------->AGL15                                    --------->ICU4------ -----WRKY45           ----------------->AGL1                                    <---------------AGL15 -----WRKY38(1)        ----------------->AGL2         <-----------GT1           <-----------------AGL3 -----WRKY12           ----------------->AGL3      --------->GLK1(1)            ===================== --->WRKY18(1)         <-----------------AGL2      <---------GLK1(1)  <---------YAB1<---------YAB1<-- ========HOX2a_HOX2a   ==========================================================================MADS_MADS   aaagatcgaagctgattacttcatttccatttgtagtagattagattcgacagatttcacaacttccatattctaattttctaatttttatggtacgatg  18883900       ---------->DOF2     ------>ZmHOX2a(1)     --------->LBD16                    <------ZmHOX2a(1)    ============================================MADS_MADS    --------------->AGL15        <----------DOF2   ----------------->AGL1       --------->TOE2(3) --------ICU4                   <---------------AGL15 ------>ICU4             <-----------ARR10                                                      <---- -TOE2(1)                --------->ARR11(3)                                             <---------ANAC46 -TOE1(1)                --------->GLK1(2)                         --------->GLK1(2)    <---------ANAC58 --AtSPL8                <---------ARR11(3)    <---------GLK1(1)   <---------ARR11(3)   <---------ANAC58 ---->YAB1           --------->YAB1 ---------->DOF2                --------->ARR11(3)   *TSS   <----- --->ICU4           --------->AHL20(2)<---------TOE2(3)           --------->RVE1(1)<----------DOF2 ===================MADS_MADS   --------------->AGL15           --------->AHL20(2) <---------DAG2 -------YAB1<----------ID1      --------->TOE1(3)      ------>ZmHOX2a(1)  <----------DOF2  --------->REM1(2)   atgattcctgaaagagaacaaaataaaaatctaacctttaaaggattagaattcttcctgccaaaaaaaaatctgtctttttgagctttttcgtgtagag  18884000                                                                                                 <---                                                                                         <---------MYB52(1)                                                                                      ===============                                                                                      ------>ZmHOX2a(2)                                                                                     ================                                                                                     <------ZmHOX2a(2)                                                                                    --------->AGP1                                                                                    <---------ARR14(3)                                                                                    --------->ARR11(3)                               <----------DOF2                                      <---------AGP1                        --------->ANAC46                                            --------->ARR14(2)                     =================================HOX2a_HOX2a                   <---------ARR14(2)                     <------ZmHOX2a(2)                                              <---------ARR11(3)            ---------->DOF2 ------>NtERF2           <-------TEIL                    --------->ARR14(3)         --------->ANAC58  <---------DEAR3(1)      --------->CCA1(2)   --------->At4g35610    <------ -----GLK1(1)   --------->ALFIN1           <---------ARR11(3)          <---------At4g35610<---------- ----ZAT6--------->ANAC58 --------->RAP2.6(3)  ------>ZmHOX2a(1)---------->DOF2   ----------->ARR10   ttcccatagttaagcaaagtgggatcacgacggctttaagaacaaaatcctagatacagagatagagaaagagagctcattgtcaagatctgtttttttc  18884100                                                                                     <---------ANAC58                                                                                     <---------ANAC46                                                                                     <---------ANAC58      --------->GLK1(2)                                                           <----------DOF2      --------->ARR14(2)                                <---------At4g35610  --------->HSFB2a(1) -------DOF2     <----------DOF2                <------ZmHOX2a(2)            <---------HSFC1(2) ================HOX2a_HOX2a                   <---------ARR11(3)         <---------PCF2 ================HOX2a_HOX2a            ------->GAMYB   <-------GAMYB  --------->ALFIN1 -----GT1 ------>ZmHOX2a(1)            --------->MYB46(3)<---------MYB52(1)  <---------HSFB2a(1) --------------ANAC81  <---------At5g28300     --------->ARR11(3)  <-----------RAV1(2)    <----------   tttgttagaatcctttcttctttgttacagccatggtttcaacctccaagatcaagtccgttgatttctacaggtgggaaccctctttcgtgtaacaatt  18884200                                            <---------------AtSPL3                                            --------------->AtSPL8                                       ---------->DOF2                                          <----                                  ------->PIF5     <----------DOF2                            -------                                  <-------PIF5    <---------DAG2                             <-------    <---------YAB1           --------->ANAC58   ------->TEIL                             <----------DOF2  --------->YAB1             --------->ANAC58  <-----------GT1                           <---------DAG2 <---------ATHB12--------->YAB1<---------ALFIN1---------->ID1                           <---------DAG2 -GT1           <---------ATHB51------->TEIL<---------------AtSPL8      ------->TEIL <-----------GT1   ccaatgataattctctcgataatggtttttgacgcacttgcaaaagtttgtacctttctatacattttcgactgtatgtgtttgattttgcctttttgat  18884300                                                                  <-----------GT1                                                               <---------ICU4                                                          <---------TOE2(3)                                                          <---------ANAC46                                                          <---------ANAC55(2)                                                          --------->ANAC55(2)           <-----------RAV1(1) -----YAB1                          <---------YAB1       <---------LBD16        <---------ANAC46 -->YAB1                            --------->ICU4      --------->MYB52(1)<---------ZAT14 --YAB1                   <-----------GT1         <---------At4g35610     --------->ZAT14    <-------   aattcgaaattggttctgtcttctcgtttttcatcttgatgatgaactgtgcatcggattacggataattactctgtgaactgtgtgtttgtgttgtctg  18884400                                           <---------HSFB2a(1)     <---------At4g35610                   --------->HSFB2a(1)                                    <--     --------->At4g35610                <------ZmHOX2a(1)                                         ---     <---------ZAT2                    --------->LBD16                                            <--     --------->ZAT2                  <---------LBD16                <---------CCA1(2)<---------GLK1(2) --ANAC46  ----------->GT1 <---------MYB52(1)          --------->CCA1(2)    <-----------RAV1(1)   ---   gagttagagctgagagtaatttgagttccatttgtttcttcaggaaaatcccaagagatttgactgaagcatctctctctggtgctggattatccattgt  18884500  Previous    Next  AGI:  At1g50940.1    Description:  ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA); FAD binding / electron carrier. similar to unnamed protein product [Vitis vinifera] (GB:CAO39007.1); contains InterPro domain Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (InterPro:IPR014730); contains InterPro domain Electron transfer flavoprotein, alpha subunit, C-terminal (InterPro:IPR014731); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); contains InterPro domain Electron transfer flavoprotein, alpha subunit; (InterPro:IPR001308) Range:  from: 18881480    to: 18883678    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50950.1    Description:  thioredoxin-related. similar to ATPDIL5-4 (PDI-LIKE 5-4) [Arabidopsis thaliana] (TAIR:AT4G27080.1); similar to ATPDIL5-3 (PDI-LIKE 5-3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G20560.1); similar to hypothetical protein OsI_025345 [Oryza sativa (indica cultivar-group)] (GB:EAZ04113.1); similar to hypothetical protein OsJ_023542 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40059.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39008.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thior Range:  from: 18883988    to: 18887893    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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