Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               <-----                                                                                             --------                                     <---------ZAT6                                          <-------                           ----------->RAV1(1)                                        <---------ARR11(3)                          --------->ANAC46                                            --------->AHL20(1)                        --------->ANAC58                                  <---------ICU4   <---------AHL20(2)                        --------->ANAC58                                  -------->HAHB4   --------->AHL20(2)                        --------->ANAC46                                  --------->YAB1 <---------AHL20(2)                       --------->ZAT18 <---------YAB1                    --------->ICU4  --------->AHL20(2)                   --------------->AtSPL8                                <---------YAB1--------->AHL20(2)            ----------->RAV1(1)  ---------->DOF2                  ----------->RAV1(1) <---------AHL20(1) ------->GLK1(2)   <---------------AtSPL8               --------->At4g35610     --------->TOE2(3)   taatctatatacaacaacaaaaatgtacacaacacaaaagtgttattgtgaatttctcagcataacaacaacaaaatgattatctcaatatatatatata  18883300                                                            ----------->RAV1(1)                                                            --------->AtMYB61                                                          ----------->RAV1(1)    --------->HSFC1(2)                      <---------AHL20(2)    <---------HSFC1(2)                     --------->AHL20(2)  ---------->DOF2 --->AHL20(2)                           --------->YAB1   <---------ALFIN1 ----AHL20(2)                           ----------->GT1  --------->AtMYB61      <---------ALFIN1 ->AHL20(2)                            ----------->GT1   --------->ANAC46  <----------DOF2      ----- --AHL20(2)    ----------->GT1         <---------YAB1   --------->MYB46(3) <---------DAG2 <-------TEIL   tatagaagcttcacaaattgaaaattttcaaaccaagtagaatgataaaattgaaatcaccaccacaaagaatgctcctttaccacttccgattcatttt  18883400                                                                                               ------                                                                                           ----------                                                                                         --------->CCA1(2)                                                                                        -------------                   <-----------HVH21                                                 ================                  <------MYB83                                ==============================HOX2a_HOX2a                  <------MYB46(1)                             <------ZmHOX2a(2)      <------ZmHOX2a(1)              --------->ARR14(2)                             --------->ARR11(3)     <------MYB46(1)  <---------YAB1 --------->MYB59        ------>ZmHOX2a(2)    <---------ARR11(3)     <------MYB83<---- ---->AHL20(2)<---------ARR14(2)     --------->ATHB12    ---------->DOF2          <--------P   <-----   taatatgaaaaaatcgaatttggtcacgacgaaaatgaatgatcgattccagcaaaaacaaaagatcgaactgaaggaaaatgggtaggagataaaagat  18883500    ------->TEIL --------->ANAC46 --------->ANAC55(1) --------->ANAC55(2) <---------ANAC55(2) --------->ANAC58                                        <------NtERF2 --------->ANAC58                                       ------>NtERF2 --->ARR11(3)                                          --------->DEAR3(1) >DOF2 --------->HSFB2a(2)                             ----------->HVH21<-----------TGA1 ---------->TaNAC69(2)                                 <---------DEAR3(1)     <---------ZAT18 ==HOX2a_HOX2a                             <------ZmHOX2a(1)      <---------YAB1 --ZmHOX2a(2)                           <---------HSFB2a(2)  ------->TEIL     --------->ZAT14 ----ARR11(3)                   --------->CCA1(2)      <----------ID1   <-----------HVH21          <-   catacgcatctagagagactggtgatggaaatggatatagatcgaggagcattagaggcgacgaacttattcttcgtcagagctctcagtagaacagttc  18883600                                                               ----------->GT1                                                    --------->ANAC58                                                    --------->ANAC58                     <------MYB83              --------->GLK1(1)                     <------MYB46(1)           --------->ARR14(2)                                   -                   <---------WOX13(1)          <---------GLK1(1)                                   <-                 --------->ATHB12       --------->GLK1(1)    ---------->DOF2  *TSS                 --              <---------At4g35610       <---------GLK1(1)---------->DOF2 --------->ZAT18   <------NtERF2 ----------TGA1 <---------YAB1    ------>ZmHOX2a(1) --------->ANAC46     <---------ZAT18 <---------DEAR3(1)   tcgtcatcgttttctcttctgattggtttctctctccttcagatttcagaattctcgcaaaaagaaagaaataagcgaactatggcaaacgtcgtcgttt  18883700                                                                         <------------CBF                                                                        --------->ATHB51                                                                        --------->YAB1                                                                        -------->HAHB4           ----                                                                        <--------ATHB1          <----                                                                       <---------YAB1           <----                                                                       <---------AHL20(2)       <----                                                                       <---------ATHB51        ------                                                                    --------->AHL20(2)       <------MYB83          <------------CBF              --------->DAG2              <---------AHL20(2)       <------MYB46(1)        <---------YAB1              --------->YAB1          ---------->DOF2               ===========     <---------ARR11(3)            <---------YAB1        <-----------TBP<---------ICU4    <------ZmHOX2a(1) ----------->CBF             <---------ANAC46          --------->ICU4  --------->ICU4   <---------TOE2(3) ----------GT1            --------->ANAC46    <------------CBF     --------->ICU4       <---------TOE1(3) ------->YAB1       <------ZmHOX2a(1)  ---------->DOF2 <---------YAB1--------->YAB1 <----------DOF2   ataacaatttcttattgctataggaactacgtcgtttatgataaagctaattgtatcatttttaaaggaattaataattgtttgaactttaaggatggtc  18883800                                                                                                   <-                                                                                                  ---                                                                                            <--------                                            ----------->HVH21                               <--------       <---------ZAT2                      <-------TEIL                                    --------->SPL7       --------->At4g35610                --------->ARR14(1)                             <---------SPL7       <---------At4g35610               <---------GLK1(2)                             <-------------  <------ZmHOX2a(2)                      --------->ARR11(1)                            <---------TOE2(3) <---------ARR11(3)                    ----------->ARR10                           <---------AHL20(2) --------->ARR11(3)     --------------->AGL15                                     <---------ICU4----- ------>DOF2            <---------------AGL15                                    <---------------AGL15 -----WRKY38(1)        ----------------->AGL2                                    --------->ICU4------ -----WRKY12           <-----------------AGL2         <-----------GT1           ===================== -----WRKY45           ----------------->AGL3      --------->GLK1(1)            <-----------------AGL3 --->WRKY18(1)         ----------------->AGL1      <---------GLK1(1)  <---------YAB1<---------YAB1<-- ========HOX2a_HOX2a   ==========================================================================MADS_MADS   aaagatcgaagctgattacttcatttccatttgtagtagattagattcgacagatttcacaacttccatattctaattttctaatttttatggtacgatg  18883900       ---------->DOF2     --------->LBD16     ------>ZmHOX2a(1)                  <------ZmHOX2a(1)    ============================================MADS_MADS    --------------->AGL15        <----------DOF2   ----------------->AGL1       --------->TOE2(3) --------ICU4                   <---------------AGL15 ------>ICU4             <---------ARR11(3)                                                     <---- -TOE1(1)                --------->ARR11(3)                                             *TSS   <----- -TOE2(1)                --------->GLK1(2)                         --------->GLK1(2)    <---------ANAC46 --AtSPL8                <-----------ARR10     <---------GLK1(1)   --------->ARR11(3)   <---------ANAC58 ---->YAB1           --------->YAB1 ---------->DOF2                <---------ARR11(3)   <---------ANAC58 --->ICU4           --------->AHL20(2)<---------TOE2(3)           --------->RVE1(1)<----------DOF2 ===================MADS_MADS   --------------->AGL15           --------->AHL20(2) <---------DAG2 -------YAB1<----------ID1      --------->TOE1(3)      ------>ZmHOX2a(1)  <----------DOF2  --------->REM1(2)   atgattcctgaaagagaacaaaataaaaatctaacctttaaaggattagaattcttcctgccaaaaaaaaatctgtctttttgagctttttcgtgtagag  18884000                                                                                                 <---                                                                                         <---------MYB52(1)                                                                                      ===============                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                                     ================                                                                                    --------->ARR14(2)                                                                                    <---------ARR14(3)                                                                                    --------->ARR14(3)                               <----------DOF2                                      <---------ARR14(2)                        --------->ANAC46                                            <---------ARR11(3)                     =================================HOX2a_HOX2a                   --------->ARR11(3)                     <------ZmHOX2a(2)                                              <---------AGP1            ---------->DOF2 ------>NtERF2           <-------TEIL                    --------->AGP1         --------->ANAC58  <---------DEAR3(1)      --------->CCA1(2)   <---------At4g35610    <------ -----GLK1(1)   --------->ALFIN1           <---------ARR11(3)          --------->At4g35610<---------- ----ZAT6--------->ANAC58 --------->RAP2.6(3)  ------>ZmHOX2a(1)---------->DOF2   ----------->ARR10   ttcccatagttaagcaaagtgggatcacgacggctttaagaacaaaatcctagatacagagatagagaaagagagctcattgtcaagatctgtttttttc  18884100                                                                                     <---------ANAC58                                                                                     <---------ANAC46                                                                                     <---------ANAC58      --------->GLK1(2)                                                           <----------DOF2      --------->ARR14(2)                                <-------GAMYB        --------->HSFB2a(1) -------DOF2     <----------DOF2                <------ZmHOX2a(2)         <---------PCF2 ================HOX2a_HOX2a                   --------->ARR11(3)      --------->ALFIN1 ================HOX2a_HOX2a            ------->GAMYB   <---------At4g35610  <---------HSFC1(2) -----GT1 ------>ZmHOX2a(1)            --------->MYB46(3)<---------MYB52(1)  <---------HSFB2a(1) --------------ANAC81  <---------At5g28300     <---------ARR11(3)  <-----------RAV1(2)    <----------   tttgttagaatcctttcttctttgttacagccatggtttcaacctccaagatcaagtccgttgatttctacaggtgggaaccctctttcgtgtaacaatt  18884200  Previous    Next  AGI:  At1g50940.1    Description:  ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA); FAD binding / electron carrier. similar to unnamed protein product [Vitis vinifera] (GB:CAO39007.1); contains InterPro domain Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (InterPro:IPR014730); contains InterPro domain Electron transfer flavoprotein, alpha subunit, C-terminal (InterPro:IPR014731); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); contains InterPro domain Electron transfer flavoprotein, alpha subunit; (InterPro:IPR001308) Range:  from: 18881480    to: 18883678    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50950.1    Description:  thioredoxin-related. similar to ATPDIL5-4 (PDI-LIKE 5-4) [Arabidopsis thaliana] (TAIR:AT4G27080.1); similar to ATPDIL5-3 (PDI-LIKE 5-3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G20560.1); similar to hypothetical protein OsI_025345 [Oryza sativa (indica cultivar-group)] (GB:EAZ04113.1); similar to hypothetical protein OsJ_023542 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40059.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39008.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thior Range:  from: 18883988    to: 18887893    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version