Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ZAT14                                               --------->At4g35610                                               <---------At4g35610                                               --------->ZAT2                                        --------->ANAC46                                   ------>NtERF2                                     --------->ANAC46                                     --------->DEAR3(1)                                   --------->ANAC46                                     ------->GAMYB                                --------->ANAC58                                       --------->DEAR3(1)                           <----------ARF1 --------->AtMYB61                         <---------ATERF1(1)            <---------TOE1(3)   --------->ANAC58                                    --------->DEAR3(1)            <---------TOE2(3)   --------->ANAC46  <-----------------AGL1     <---------ZAT14        <----------DOF2    <----------ID1  <---------ALFIN1          --------->ALFIN1--------->MYB52(1)   ataccactcggttttaggtttgggaattggagacaagacacaacaccactgctccctgtttggcacagagagtgtcgattgcagagccaacgccgagtct  18852900                              ------>ZmHOX2a(1)                         --------->HSFB2a(1)                         <---------HSFB2a(1)                        <---------HSFC1(2)                        --------->HSFC1(2)                        --------->HSFB2a(1)                       <---------ARR14(2)                       --------->ARR14(2)                    --------->LBD16                                   <---------ANAC58                    <---------TOE1(2)                                --------->At4g35610                    --------->ANAC46                              <---------MYB52(1)                   <---------HSFB2a(2)                          <---------MYB46(3)                   <---------LBD16                            <------NtERF2                   --------->HSFB2a(2)                       <---------MYB46(3)                   <-----------RAV1(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->bZIP60(2)                           --------->ALFIN1             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------DEAR3(1)            <---------DOF5.7(2)                           --------->ALFIN1         ------->TEIL         ------>NtERF2 <---------ARR11(3)                --------->MYB55(2) <---------ANAC58         --------->LBD16<---------HSFB2a(1)              <---------MYB46(3) <---------ANAC58        <       <---------LBD16<------ZmHOX2a(1)                 <---------ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             ----------->HVH21<---------ANAC58           <---   ------->TEIL<-----------HVH21             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------GLK1(2)xx   tcttgtacctccggcaacgtcccaggaacttcctcttggaagttgttcccttgagacgacgggtggctgtttgctggagcgtctgaatctcgcgactgag  18853000                            <---------DEAR3(1)                           <---------ABI4(1)                           --------->ATERF1(1)                           <---------At4g35610                           --------->At4g35610                          <---------RAP2.6(1)                          <---------RAP2.3(1)                          <---------ORA47(2)                          <---------ERF1                          ------>NtERF2                          <---------RRTF1(1)                         <---------DREB2C(2)                         <---------RRTF1(2)                         <---------ANAC46                         <---------RRTF1(3)                         <---------RAP2.3(3)                         --------->ATERF1(2)                         <---------DEAR3(1)                        --------->ATERF1(1)                    <-------GAMYB                   <-----------RAV1(1)                   <---------MYB46(3)                  <------NtERF2   --------->ZAT14                <---------ANAC46  <---------ZAT14               --------->ATERF1(1)--------->ZAT18               <------NtERF2<---------ANAC46             <---------DEAR3(1)<---------ANAC46             --------->ALFIN1 <------NtERF2           <---------TGA1a<---------ATERF1(1)           <---------bZIP60(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->ZAT2<---------ATERF1(2)           =================MYC_MYB    --------->ZAT18                        <-------GAMYB           <---------O2 <------NtERF2  <---------ZAT18                       <---------MYB46(3)<-----          <---------AtMYB61<------NtERF2 ------->TEIL                       <---------TOE2(3)  ------      <---------At4g35610<---------RAP2.3(2)                                <---------AtMYB61  ------      --------->At4g35610<---------RAP2.6(2)                       <----------DOF2     <---------MYB52(1) ------ZmHOX2a(1)<---------At4g35610<---------ANAC46           <------ZmHOX2a(1)     <---------MYB46(3) ---ZmHOX2a(1)<---------ATERF1(1)--------->ALFIN1         --------->ALFIN1<---------ANAC46     <----- xxxxxxxxxxxxxx>smallRNA(i)<---------LBD16          --------->CCA1(2)  <-----------RAV1(1)    <------   gaggagtttgctgaggtggcgctgttggcggcggagtgtagtggacctcttcagatagaggtggaggagcttgatgttgtggttgagtcgttgagttctg  18853100                                                                                                  ---                                     <---------ZAT14                                              <--                                     --------->ZAT14                                              <--                                     ----------->bZIP910(2)                                       ---                                     <---------At4g35610                                         <---                                     --------->At4g35610                      <---------TOE2(2)  <---                              ------->PIF5                                    <---------TOE1(2)  ----                             <---------TGA1a                             <-----------HVH21       <---                             <---------ANAC58                          --------->ATERF1(1)       <---                             --------->TGA1a                           <------NtERF2            <----                             <---------O2                             <---------ATERF1(1)       -----                             --------->O2                             ------>NtERF2             <----                             <---------ANAC58                        <---------ARR14(2)        ------                          --------->LBD16                            --------->ARR14(2)        ------                         <---------ANAC58                           --------->ZAT2             <-----                         <---------ANAC58                           <---------ZAT2            <------                        <---------LBD16                             <------NtERF2             <------                    --------->MYB52(2)                              --------->ATERF1(1)       <------                    <---------MYB46(3)                             <---------RAP2.3(1)        <------                <---------MYB46(3)   <-------TEIL                  <---------DEAR3(2)         <------               <---------ANAC46      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->DEAR3(1)    ------>NtERF2               --------->ALFIN1     --------->ALFIN1               <---------ATERF1(1)        <------              <------NtERF2  <---------ANAC46                      ------>NtERF2 --------->ARR14(2) -              <-------GAMYB------>NtERF2                          --------->RAP2.6(2)         <------            --------->ALFIN1 <---------bZIP60(2)                  <---------RAP2.6(2)        <-------            <---------DREB2C(2)   <---------ANAC58                --------->ATERF1(2)        <-------            <---------DEAR3(1)<-------PIF5                        <---------DEAR3(1)         <-------           <---------ABI4(1)--------->SPL7                        <---------ATERF1(2)      <--------- ----HSFB2a(2)--------->At5g28300 <---------ANAC58                --------->DEAR3(1)      --------->DEAR3(1) --->HSFB2a(2)=========================MYC_MYB                   <---------LBD16 <---------ARR14(2)-- --->HSFC1(1)<---------ORA47(2)   <---------ANAC46               --------->ATERF1(1)     --------->DEAR3(2) ----HSFC1(1)<---------MYB46(3)--------->ALFIN1     <-------TEIL<---------At4g35610      --------->MYB46(3) ---LBD16--------->ALFIN1<---------ANAC46    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<------ZmHOX2a(1)<---   gaagagttggagaggcggtggatagttgcggacgtggggtgcagacgttgaaggtccatgttgttgagccggctccgtcgcaggaacttgaaccgtcggc  18853200                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <------NtERF2                                                     --------->LBD16                                                     <---------DEAR3(2)                                                     <---------ATERF1(1)                                                     ------>NtERF2                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    --------->RAP2.3(2)                                                    --------->ATERF1(2)                                                    <---------ATERF1(2)                                                   --------->RAP2.3(1)                                                   --------->ORA47(2)                                                   <------NtERF2                                                   --------->ATERF1(1)                                                   <---------LBD16                                                   --------->DEAR4(2)                                                   --------->ERF1                                                  <---------DEAR4(2)                                                  ------>NtERF2                                                  <---------RAP2.6(1)                                                  <---------RRTF1(1)                                                  <---------ATERF1(1)                                                  <---------ERF1                                                  --------->ABI4(2)                                                  <---------RAP2.3(1)                                                 <---------DEAR3(1)                                                 --------->DEAR3(1)                                                <------NtERF2                                                <---------ABI4(2)                                                --------->ATERF1(1)                                                --------->DEAR4(2)                                                --------->RAP2.6(1)                                                --------->RAP2.3(1)                                                --------->ERF1                                                --------->RRTF1(1)                                               <---------ERF1                                               <---------DEAR4(2)                                               <---------RAP2.3(1)     <---------ZAT14                           <---------DEAR3(2) <------NtERF2                                 <---------ORA47(2) ------>ATERF1(1)                              ------>NtERF2 -------LBD16                                  --------->LBD16 ----NtERF2                                    <---------RRTF1(1) ------>RAP2.3(1)                              <---------RAP2.6(1) ------RRTF1(1)                               --------->RAP2.3(2) ------RAP2.6(1)                              --------->ATERF1(2) -->NtERF2                                    <---------RAP2.3(3) ------ATERF1(1)                              <---------RAP2.3(2) ------RAP2.3(1)                              <---------DEAR3(1) -----DEAR3(1)                                --------->DEAR3(1) ---->DEAR3(1)                                <---------ATERF1(2) -----RAP2.3(2)                              <---------LBD16 --->RAP2.3(1)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->ATERF1(1)                            --------->MYB46(3) -NtERF2                                --------->ARR14(2)                  <------NtERF2 ---ORA47(2)                      <---------ARR11(3)--------->DEAR3(1)      --------->ATERF1(1) ---RAP2.6(1)                     --------->ARR11(3)<---------DEAR3(1)     <---------ATERF1(1)     <- ---RAP2.3(1)                     <---------ARR14(2)--------->RAP2.3(3)    ------>NtERF2          --- ---DEAR3(2)               --------->CCA1(2) --------->ERF1               <---------DEAR3(1)     <--- ---ATERF1(1)             --------->ARR11(3) --------->RAP2.3(1)          --------->DEAR3(1)    ----- ---ERF1                  <---------ARR14(2) --------->ATERF1(1)       <---------DEAR3(1)     ------- -------->LBD16           --------->ARR11(1) --------->ORA47(2)       <-------TEIL         --------->LBD16 ---RRTF1(1)              <---------ARR11(3)<---------ATERF1(1)       --------->SPL7      --------->HSFB2a(2) --DEAR3(1)               --------->ARR14(2)------>NtERF2           <---------SPL7        <---------ANAC46 --RAP2.3(3)             <---------HSFB2a(1)--------->LBD16        <---------ANAC46       <---------LBD16 --At1g77200            ----------->ARR10 ------>ZmHOX2a(2)        <---------ANAC58       <---------HSFB2a(2) --HVH21              ===========================HOX2a_HOX2a    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->DEAR3(1)     <------ZmHOX2a(1) <---------ARR14(2)      ----------->HVH21<---------SPL7<----- ------ERF1     <---------LBD16<---------AtLEC2<---------ATERF1(1) <---------ANAC58      <---------LBD16   gccggagtgaagttgtattggggaggaagatttgcaggtcttgatccgccggcgccggctctctgagtgacgttcggcgtcgtcttacgcttccgggagc  18853300     --------->SPL7     --------->DEAR3(2)   <---------WRKY18(1) --------ZAT2                                                                       ------>ZmHOX2a(2) --->NtERF2                                                                        <------ZmHOX2a(2) ------ALFIN1                                                          <----------ID1    <---------AtMYB61 ---->ATERF1(1)                                                 >>>>>>>>>TBF1     --------->ARR14(2) -->PCF2              *TSS              <------------CBF     >>>>>>>>>TBF1    <---------At4g35610 ----ATERF1(1)    <---------YAB1 <---------ATHB12<------------CBF  >>>>>>>>>TBF1  <---------ARR14(2)   cacctcgaccggcgataggcatgatagtgagccaaatgaagagattgaagagattgaagagaagaagaagaagaagacgaagcagatcggagaggttgaa  18853400                                =====================HOX2a_HOX2a                                <------ZmHOX2a(1)                         ==============HOX2a_HOX2a                         ------>ZmHOX2a(2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->ARR11(3)     ==========================HOX2a_HOX2a                <------ZmHOX2a(2)             <------ZmHOX2a(2)         ------>ZmHOX2a(2)                =======================HOX2a_HOX2a                    <---------ARR11(3)               --------->ARR11(3)      >>>>>>>>>TBF1                ------>ZmHOX2a(2)  <---------LBD16               <---------ARR11(3)   >>>>>>>>>TBF1                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ARR11(3)  <------ZmHOX2a(1)    <---------ANAC46      <------ZmHOX2a(2)<---------ARR11(3)    --------->ARR11(3)  ==============HOX2a_HOX2a     <-----      =================================HOX2a_HOX2a   <---------REM1(2)--------->ARR11(3)       <-----   ggtgagagatcgaagaagatcgatcgatcttataggaagaagaagaagatcgatctacaaggagaaaggatcgatcttagaaagagttttggggattagg  18853500                                    ------>ZmHOX2a(2)                                <------MYB83                              <--------P                                      <------ZmHOX2a(2)                             <-------GAMYB                                   --------->ARR11(3)                  >>>>>>>>>TBF1 <------MYB46(1)                ------------------------>ANAC81   <---------HSFB2a(2)     <---------AtMYB61      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxx   --------->HSFB2a(2)    <------ZmHOX2a(1)     <---------TOE2(3)      >>>>>>>>>TBF1   ---------->DOF2 ----TOE2(3)   >>>>>>>>>TBF1<---------MYB46(3)  <---------TOE1(3)   >>>>>>>>>TBF1   >>>>>>>>>TBF1<--- ----TOE1(3)>>>>>>>>>TBF1 =================HOX2a_HOX2a       ---------->DOF2 <---------ARR11(3)  xxxx   gttttcgagacgaagaagaagaagaagaggaggttggatcgaataggtttaaggtgagaaatagaaagaagaagaagaagatcgaagaagaaagagaatt  18853600     <---------TOE2(3)                                                                      xxxxxxxxx     <---------TOE1(3)                     xxxxxxxxxxxxxxxx>smallRNA(i)            <---------TOE2(3) xxxxxxxxxxxxxxxx>smallRNA(si3) >>>>>>>>>TBF1                                      <---------TOE1(3) ------LBD16            <----------ID1>>>>>>>>>TBF1                            <----------DOF2 xxxxxxxxxxxxxxxxxxx>smallRNA(s2)  >>>>>>>>>TBF1                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ggggattagggttttgcgaaacgaagaagacgaagaagaagaagaaatggctaagtgtttggctcgaagagaaatgactcgatttagggttttcaacaca  18853700                                  <---------------AGL15                                 <-----------------AGL2                                 <-----------------AGL3                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               ------>NtERF2                            ------>NtERF2                           --------->ETT(2)                           <---------ETT(2)                                           <---------ANAC46                     --------->ATHB51                                            <---------ANAC55(2)x                     <---------ICU4                                       <---------ATHB12       ----   <-----------HVH21<---------YAB1--------------->AGL15               <---------MYB52(2)         ---- xxxxxxxxxxxxxx>smallRNA(fl3)<------NtERF2         <------NtERF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   atagaggtcgcataatagtcgcataattgtcgccaactaattttggtttgggcctcgaaattttgaagcccaactaatcaaacaagtatcgttgaatagt  18853800  Previous    Next  AGI:  At1g50850.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 9.6e-44 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 18851078    to: 18853322    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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