Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------YAB1                                                                    <---------AHL20(2)                                                                    <---------AHL20(1)                                                                    --------->AHL20(2)                                                      <---------TOE2(3)                        ------                                                   <---------YAB1   --------->AHL20(1)         <-----                                                <---------YAB1     --------->AHL20(2)         <------                                <----------DOF2 <---------AHL20(2) --------->YAB1           ---------                 <---------AHL20(2)     <---------AHL20(2)     <---------YAB1              <---------AHL20(2)                --------->AHL20(2)     <---------AHL20(2) ------->TEIL       --------->AHL20(2)------ -DOF2    --------->YAB1   <-----------GT1  <---------AHL20(2)------------>CBF            --------->AHL20(2)   aaactcatcaaatcagcattaaatagttttaactctttttttttattttttttattaatgaacttacaattatattagaaaaaatagactgatttaataa  18824500                                                            --------->DAG2                                                           ---------->DOF2                                                        --------->TOE2(3)                        <------MYB83                    --------->TOE1(3) --->YAB1               <------MYB46(1)                 --------->YAB1 ----ICU4               ----------->GT1         <---------ANAC58 ---YAB1              <---------WOX13(1)        <---------ANAC58<----------DOF2                   --- >YAB1              --------->ATHB12    <-----------GT1<---------YAB1                 <---------ARR11(3) -->HAHB4 ----------->GT1 <XXXXXXXXXXXXXXXXXXXXMIR406<-----------GT1                  --------->ARR11(3)   tagcattccaaattgcaaaaactgattggtaacaatagcattttacaatttcttgttaccataaagctttggcatttgtgtctagtaagttctctaggta  18824600                            <---------ARR14(2)                 ------>MYB83--------->CCA1(2)                ----------->RAV1(1)                --------->MYB52(1)            --------->ANAC46--------->ARR11(1)         <------ZmHOX2a(2)  --------->ARR11(3)        <---------ARR11(3)  <---------ARR11(3)                                                      -        --------->ARR11(3)  --------->ARR14(2)                         <---------AHL20(2)           <  ---------->DOF2------>MYB46(1)                    <------------CBF  --------->AHL20(2)        ----- ------>AtLEC2 --------->AtMYB61      <---------ALFIN1  <---------HSFB2a(2)                <---------STY1(2)   atgcaaaagagatcacaccaacagattgaagatatgtgagacactcccataaaacattgtagaagtttcagattaaatggttttgagacaactagctaag  18824700                                                                                         <---------ZAT18        <----------DOF2                                                                  --------->ZAT18        <---------DAG2                                                                   <---------ZAT14      <---------------AGL15                                                              --------->ZAT14      --------------->AGL15                                                         <---------ZAT14     <-----------------AG                                                           --------->ZAT14     <-----------------AGL2                                                      <------------CBF  <-     <-----------------AGL1                     <---------YAB1                  <---------AtLEC2   <- -------->ARR14(2)                            <-----------GT1                  <---------ZAT14  ----- ---------ARR14(2)                     ------------>CBF                 --------------------->WRI1 <- ---->At4g35610                       >>>>>>>>>>>>>>>>>LFY <----------DOF2     --------->ZAT18-------   cagaaattccctttttggtcttcttctcaacgattttagttcccaatgttaccattaatctctttaacacatttctctgtgtgcattgcagtgctctcat  18824800                                       <---------ALFIN1                                     ------>ZmHOX2a(1)            --------->REM1(2)       --------->ANAC46 --------bZIP60(2)               ------>ZmHOX2a(2)                         <-----------GT1 --------ANAC58                 --------->GLK1(1)                     --------->ICU4 ------>HVH21                   <---------GLK1(1)                  ------------>CBF --------ANAC58                <---------ARR11(3)        <---------At4g35610                        - -->YAB1 <---------ANAC46      --------->ARR11(3)        --------->At4g35610                  -------   gacctgtctctacgtgtacaaaatggagcatatgatctcctccactactgaatgttgacatctgaatttgtcaatattatctgttttgagtagaaatcta  18824900                                                                               --------->TOE2(3)                                                                             ------->TEIL      ------         --------->AHL20(2)                                       --------->ANAC58       <------ZmHOX2a(2)  <---------ANAC58        <---------AHL20(2)                      --------->ANAC58      --------->ARR14(2)  <---------ANAC58  <---------AHL20(2)                   --------->YAB1   ======================HOX2a_HOX2a -------->ARR11(3)  --------->AHL20(2)                   <---------ICU4   ------>ZmHOX2a(1)   <------ -->TOE2(3)    <---------YAB1<---------YAB1             --------->ICU4   --------------->AtSPL8------   aatttcttggtttaaatatgatttatattatatgatggaatcaaggctatctctgttcatcatgaagcaaacaatcctgtacctcatttcgatcccctac  18825000                                                                                       --------->HSFB2a(2)                                                                                       <---------HSFB2a(2)                                    --------->TOE2(3)                               --------->GLK1(2)                                    --------->TOE1(3)                              <---------GLK1(2)                      <---------At4g35610                             <---------MYB52(1)   --------->ANAC58  <---------ANAC46    --------->At4g35610                       --------->At4g35610--------->ARR14(2) ---->DOF2          <-----------RAV1(2)         <---------YAB1  <---------At4g35610<---------ARR14(2) ---ALFIN1         <---------At4g35610  <---------YAB1 <---------ANAC58    <---------ZAT18 --------->ANAC58 --->SPL7--------->ATHB12           <---------DAG2     <---------ANAC58<---------ICU4  <---------HSFC1(1)   agcgatgtgaatgtttgactcatcagatggcttcaaaaccttatgcttatatgattttcttgtttcatctccattagtgcatccagattccagaagcaaa  18825100                                                                                    <----------DOF2                                                                                  <---------ZAT2                    <-----------GT1                           --------->YAB1      --------->At4g35610             <------MYB46(1)                             ------>ZmHOX2a(2)        <---------At4g35610             <------MYB83                           <---------WOX13(1)--------->At4g35610     <------          <---------ANAC58                   <---------DAG2------>ZmHOX2a(1)      --------->ZAT2          <---------ANAC58     <----------DOF2   <---------YAB1      <---------ARR11(3)     ---------   cttttgatgagggcttggtatttttctgtctgcctttaatgctagcaccttctcattgatcctttcatcagcatcttccttctcagcttcactgcaacac  18825200                                        <---------AtLEC2                                 <---------HSFC1(2)                                 <---------HSFB2a(1)                                 --------->HSFB2a(1)                                 <---------WRKY18(1)                                 --------->HSFC1(2)                                 --------->WRKY38(1)                            <---------HSFB2a(2)                                     --------->WRKY12                            --------->HSFB2a(2)                                   --------->At4g35610                            <---------ANAC55(2)                                   <---------At4g35610                      <---------------AGL15                                       <-------GAMYB    <-         ------>ZmHOX2a(2)  --------->ANAC55(2)                                  <-----------RAV1(1)  XXXXXXXXXXXXXXXXXXX>MIR3434    --------->MYB46(3)                     <---------At4g35610     <---- ---ALFIN1            --------------->AGL15                <---------MYB46(3)  ------>ZmHOX2a(1)----- -->RAV1(1)          <-----------------AGL3             <----------DOF2 --------->At4g35610  --------   ttcttatctgatcccactatttctctagttatggaaccatcttcatggagcacaaacactttggttcaagcttgagctctcctctgttgacccttcaaga  18825300                                                       --------->ALFIN1                                                       ----------->HVH21                                                      --------->At5g28300                                                     <---------ANAC46                                                    <---------DEAR3(1)                                                    <---------ANAC46                                                <---------At4g35610         --------->ARR11(3)                     ----------->RAV1(2)     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ARR11(3)                     --------->ZAT2      <---------DAG2        <---------GLK1(1)                       --------->At4g35610 <----------DOF2 <-----------RAV1(1)                            <---------ZAT2  <---------WOX13(1) ---------DOF2                                <-----------RAV1(2)  <---------ANAC58 -----ARR11(3)              <----------DOF2--------->At4g35610<---------MYB46(3)             ------>ZmHOX2a(1) ---->ARR11(3)      --------->YAB1         <---------At4g35610--------->ATHB12        --------->AHL20(2) ->HSFB2a(2)    <---------MYB52(1)    <-------GAMYB<---------LBD16 <---------ANAC58   <---------AHL20(2)   actttgttggagttcttcgttatcagacttctttcaagagcgttaagctcagctgcggtgaaggtgattgctttttttttttttttttttaaatcctttc  18825400  Previous    Next  AGI:  At1g50780.1    Description:  electron carrier/ iron-sulfur cluster binding. similar to MADS-box protein (AGL74 ) [Arabidopsis thaliana] (TAIR:AT1G48150.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) Range:  from: 18824935    to: 18826745    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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