Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>ZmHOX2a(2)                            <-----------------AGL3                          --------->ARR11(3)                          <---------ARR14(2)                          <---------ARR11(3)                                                        -                          <---------AGP1                    --------------->AGL15                   -                         <---------CCA1(2)                  <---------------AGL15                   <                        <------MYB46(1)                <------ZmHOX2a(2)                            <                      <--------P                      --------->ARR11(3)                           <-            --------->TOE2(3)<----------DOF2          <---------ARR11(3)   --------->YAB1        ----          --------->GLK1(2) ================================================MADS_MADS            <---         <---------GLK1(2)--------->ARR14(2)      ---------->DOF2  ----------->GT1              <---- --YAB1----------->ARR10<------MYB83        <-------TEIL   ----------------->AGL1               -----   aagaaccctaagattcttaaaacggttggatctttatgtagatagattcagttaaagatcgacccaatagagaaaaatcataaacaagattgaattcaat  18742800        <----------ID1                     --------->At4g35610 -------->ATHB12                     --------->ICU4 -------->YAB1                   --------->At5g28300 --------HAHB4                  --------->ANAC46 ---------ICU4                  --------->TOE1(3) --------YAB1                   --------->TOE2(3)                                       --------->DEAR3(1) ----->YAB1                     ------->GAMYB                           <---------At4g35610 ------ICU4                   <---------At5g28300                       --------->At4g35610 -----ATHB12            <----------DOF2    <---------At4g35610---------->DOF2        <---------ALFIN1 ---->ICU4  ---------->DOF2  <-----------GT1               <---------ANAC55(2)  <-----------GT1   tatcattagggagacaaagttgagagctttttaaccgtaactatgagctaagacaactgttacataaaaccctaagctcaattttcaacacagcccaaac  18742900                                                                       --------->AHL20(2)                                                                  ----------->RAV1(1)                                                                 --------->DEAR4(1)                                                                 --------->DREB2C(2)                                                                --------->DEAR3(2)                                                                --------->MYB46(3)                                                               -------->P                                                              --------->MYB52(1)                                                           --------->ANAC58                                  ------------------------>ANAC81------->GAMYB                     --------->ANAC55(2)                   --------->ANAC58                     <---------ANAC55(2)                 ---------->DOF2                  <----------DOF2                     <---------HSFB2a(2)              <---------At4g35610     ---------->DOF2    <---                     --------->HSFB2a(2)        <-----------ARR10--------->At1g77200----------->GT1     ---------->DOF2 ----------->GT1 ---------->DOF2  --------->At4g35610  --------->AHL20(2)   -----   caaaaaacaaagtaagttgtgttctgtaactaagaaaatcaaagaaaccagaactcagcgaaagcaaccgacataaaataaaaagatggaaactttgaga  18743000                                                                                                 XXXX                                                                                              -------                <------MYB83                                                               <---------WOX13(1)                <------MYB46(1)                                                            <--------P               --------->MYB111(1)                                                        <-------GAMYB               --------->MYB111(2)                                                    --------->ARR14(1)               --------->MYB46(2)                                                     --------->CCA1(2)               <---------MYB46(3)                                      --------->GLK1(2) <------MYB83         ----------->RAV1(2)                                          <---------ARR11(3) <------MYB46(1)   --------->GLK1(2)                                                  --------->ARR11(3)<---------AtMYB61   <-----------ARR10                       <------ZmHOX2a(1)        <---------TOE2(3)--------->ARR11(1)  <---------GLK1(2)                     --------->CCA1(2)       <----------DOF2      <---------ARR14(2) ---ZmHOX2a(2)<--------P               --------->ARR14(2)    --------->GLK1(2)       --------->ARR11(3) ---->ARR11(3)<---------MYB55(1)       <---------ARR14(2)   <---------GLK1(2)        --------->ARR14(2)   tcaagaatctaacctggttggtaatagtttgcagagagacagataggagactgagtttgagagattctttgagattttgagaaaaaagatttggttgata  18743100                                                                              ----------------->AGL1                                                                       <---------MYB59        -------                     --------->GLK1(2)                <---------YAB1  <---------ANAC58     --------->YAB1        <---------TOE2(3)                        <-------GAMYB        <---------ANAC58     ----------        <---------TOE1(3)                       <---------MYB46(3)<---------ANAC58  --------->LBD16 XXXXXXXXXXXXXXXX>MIR829.2    ---------->DOF2   --------->MYB52(2)<---------ANAC58<-----------RAV1(2) -->ARR11(3)---------->DOF2 --------->YAB1<----------DOF2<-----------GT1   <----------DOF2--------->ICU4   ttgaagcttcaaggtaaagagagaatcgaatcaaaagagaagtgctttgtttgttgatgataccacttgcttgcctactttccaccaggggaataataaa  18743200                                                 --------->WRKY12                                                 --------->WRKY45            <-----------RAV1(1)                                                 --------->WRKY38(1)    >>>>>>>>>>>>>>>>>LFY                                        <---------ARR14(2)          --------->ARR14(2)                               --------->HSFB2a(2)                  <---------ARR14(2)        <------                       <---------CCA1(2)--------->ARR14(2)       <---------TOE2(3)<---------ANAC46                    ------>ZmHOX2a(1)  ------>MYB46(1)           <---------TOE1(3)<---------ANAC58    <-----------GT1--------->TOE2(3)   ------>MYB83             <---------At5g28300           <------ -->YAB1        <-----------GT1<---------HSFB2a(2)          <---------ICU4 <------------CBF   <------ ->GT1 --------->TOE2(3)   <----------DOF2     <----------DOF2 <-----------GT1    <---------ANAC58 --   aacgcttaacctcatttttatcctcatctctttctaaaaccaaatacccctttgactactcatttttacggttttgccattgttgcttattttgtagcgc  18743300                                --------->YAB1                            --------------->AGL15                            <---------------AGL15                                         <---------AHL20(2)                   --------->TOE2(3)                                                     --------->AHL20(2)                 ------->TEIL--------->YAB1                                              --------->AHL20(1)              <---------ANAC55(2)                   <---------ANAC46                <---------AHL20(2)      --------->YAB1<----------DOF2              ----------->TGA1             ----------->GT1 ---ANAC58   <---------------AtSPL3       --------->YAB1        ----------->GT1     --------->AHL20(2) ---ANAC46   --------------->AtSPL8     --------->ICU4       --------->MYB52(1)     --------->AHL20(1) ---ANAC58   <---------------AtSPL8  ------------>CBF ----------->GT1 <---------AHL20(1) <---------AHL20(2) -------->DOF2--------->ANAC55(2)  ------->GAMYB ----------->HVH21    --------->AHL20(1) <---------AHL20(1)   gtaaagaataagaattaagtacctttatttctaataacagtcaatattagtctgacgagtaaacaactgtaatatataactggaaataaaataaaattcc  18743400                                                                        --------->AHL20(1)                                                                        --------->AHL20(2)                                                                        <---------AHL20(1)                                                               --------->ATHB12                                                               <---------ICU4                                                            --------->YAB1                       <---------YAB1                   <---------AHL20(2)         <---------YAB1                  --------->bZIP60(1)                  --------->AHL20(2)        --------->YAB1                  <---------bZIP60(1)        --------->TOE2(2)<---------YAB1    --------->ICU4                  --------->TGA2(1)          --------->TOE1(2)--------->ICU4--------->AHL20(2)           --------->AtLEC2                 --------->YAB1 <---------AHL20(2)<---------AHL20(2)       <-----------HVH21             <------------CBF <---------YAB1   <---------CCA1(2)   aaaaacaagtgtcatgcattacatcactattatctgagtaattgaatcatacgagtattatataatgattttcatatattaaatgatgaaacatttggga  18743500                          ----------->HVH21                         <---------ANAC58                         <---------ANAC58                        <---------At4g35610                        --------->At4g35610                    <---------ANAC58                    <---------ANAC58                    <---------O2                    <---------bZIP60(2)                    <---------ANAC46                      --------->ANAC55(2)             ---------->ID1         <---------MYB46(3)                               <---------ANAC55(2)           <---------MYB46(3)   --------->YAB1 <-----------HVH21  <-----------GT1  <----------DOF2       <-----------GT1      <---   gttaatgagagtagttgaaatgtcgtggctgaccatgttttaccagagtcaaattgcattaagtaattcaacatgttttaacagttttgtttgttctatt  18743600                                                                              <--------ATHB1                                                                 <---------ANAC58                                        <------ZmHOX2a(2)        <---------ANAC58                                       <---------ARR11(3)   <-----------RAV1(1)          <-----------GT1        --------->ANAC58       --------->AHL20(2)    --------->YAB1    <----------DOF2              --------->AtLEC2       <---------AHL20(2)   <---------ATHB51     xxx    <---------DAG2               --------->ANAC58<---------YAB1  <---------ANAC46           --------- --------GT1          <-------TEIL     --------->ARR11(3)  <---------TOE2(3) <---------YAB1----------   aacacactttttttacctagaaaattcatggaaccatgcaagatcaatagtatgatatataaatgttgcgttttccacaataatagtatacaaaatgaaa  18743700  Previous    Next  AGI:  At1g50600.1    Description:  SCL5; transcription factor. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.1); similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO38849.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 18740800    to: 18743215    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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