Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->At4g35610          ----------->RAV1(1)                <---------ZAT2             --------->At4g35610                <---------At4g35610       --------->RAP2.6(2)                --------->ZAT2          <---------At4g35610                ----------->RAV1(2)     --------->At4g35610             <---------At4g35610       ------->GAMYB             --------->At4g35610    --------->MYB52(1)                                    <---------WOX13(1)           --------->YAB1       ------>ZmHOX2a(1)                --------->TOE2(3)       >>>>>>>>>ARR1          <---------ATHB12      <---------------AGL15            --------->YAB1          >>>>>>>>>ARR2     <---------At4g35610       <---------MYB59                   --------->TOE1(3)      --------->ATHB12     --------->At4g35610       ----------------->AGL3    --------->ZAT6                <---------YAB1   aactatcagctaatcagcagctgaactacaggtcctaataacagcagcaacaaaaatcaactctaaaccataatcgaagtacaaagagtatgattgttca  18719200                              <--------P                              <---------WOX13(1)                              ----------->GT1                        --------->ARR11(3)                                    --------->YAB1                      ----------->ARR10                                      <---------YAB1              <-----------RAV1(1)                                 ----------->GT1                ----            --------->ANAC55(2)                                 <---------ANAC58                 ----            <---------ANAC55(2)                                 <---------ANAC46          --------->YAB1            ----------------->AGL1        ---------->DOF2       <---------ANAC58         ---------->DOF2   acaagtgtctcattacctgttgggaacatctggttgatatactctaaagcactcgacttatccatggcttgtaatttgtatgataaaaccaaaaatcact  18719300                                                                                         --------->GLK1(1)                        <------ZmHOX2a(2)                                         ----------->HVH21        --------->ARR11(3)                                                       <-----------HVH21        --------->GLK1(2)                                                        <-----------TGA1        <---------ARR11(3)                                                      --------->bZIP60(2)        --------->ARR14(2)                                                      --------->ANAC46    -        <---------ARR14(2)                                                      --------->ANAC58    -  ----------->GT1      --------->ARR11(3)                                       --------->ANAC58    - ----->ANAC58          <---------ARR11(3)                               <---------ARR11(3) <------ZmHOX2a(2) ----->ANAC58      ---------->DOF2<----------DOF2--------->YAB1         --------->ARR11(3)--------->ARR11(3)   cgaaatgaaaaatctgcaaaacaaagatcagggacactttcttcatactaatgagaacatagccccatatataagagcttctacgtcacagagatcaagt  18719400              ------>ZmHOX2a(2)             <------ZmHOX2a(2)              --------->DAG2            --------->ARR11(3)             ---------->DOF2            <---------ARR11(3)    <---------ANAC58                            <---------YAB1     <---------ATHB12             <---------ANAC58            <------NtERF2 --------->YAB1     --------->MYB46(3)           <---------ANAC46           <---------HSFB2a(2) -------->ANAC58            --------->AHL20(2)               --------->HSFB2a(2)           --------->ANAC58 -------->ANAC46            <---------AHL20(2)         <---------ATHB12  <---------ICU4    --------->ANAC58 -------->ANAC58           --------->AHL20(2)  --------->ARR11(3)     --------->YAB1     ---------->DOF2   cgacgcaaccattagatccctagttccgatttaattgggtgtcaaaaaagttctacaatcagtcgggaacaataagaattataaatggtctaaaagcaaa  18719500                                                                             <---------ATERF1(1)                                                                             ------>NtERF2                                                                            <---------DEAR3(1)                                                                            ----------->HVH21                                                                           <------NtERF2                                                                          --------->LBD16                                                                          ------>NtERF2                                                                          <---------ATERF1(1)                                                                         <---------DEAR3(1)                                                                         <---------ATERF1(2)                                                                         --------->ATERF1(2)                                                                         --------->DEAR3(1)                                                                        <---------LBD16                                                                        --------->ATERF1(1)                                                                      ------>ZmHOX2a(2)                                                                      ===============================                                                                  <---------YAB1           ------>ZmHOX2a(2)                                                                  --------->ICU4          <------ZmHOX2a(2)                                                               <---------DEAR3(1)         ===========                                                              <------NtERF2--------->ATERF1(1)                                                              --------->ATERF1(1)        <---------ARR14(2)                                                             <---------ORA47(2)       ===============                                                             <---------ERF1--------->RAP2.3(1)                                                             ------>NtERF2<---------RAP2.3(1)                                                             <---------RAP2.3(1)      ------>ZmHOX2a(2)                                                            <---------RAP2.3(3)      ================                                                            <---------RAP2.6(2)      <------ZmHOX2a(2)                                                            <---------RAP2.3(2)     --------->ARR14(2)                                                            <---------DREB2C(2)     <---------ARR14(2)                                                            --------->ATERF1(2)    <---------GLK1(1)                                                            <---------RRTF1(3)     --------->GLK1(1)<                                                            <---------ATERF1(2)<---------ANAC46    <-                   ---------->DOF2       ====================================HOX2a_HOX2a --------->ARR14(2)                 <---------YAB1          <------ZmHOX2a(1)  <---------RRTF1(2)--------->ATERF1(1)  <-      <---------At4g35610              <---------TOE2(3)    <---------DEAR3(1)<------NtERF2==========      --------->At4g35610      <---------ANAC55(2)          <---------ANAC46--------->DEAR3(1)   ----   atcgaagaagctcacgagtatgaaagagagaacgcgtaaatgaggaagaacaagagcaaatggcggcgatgatcgccggcgacggagatcggatcggtcc  18719600         <---------GLK1(1)         --------->GLK1(1)         --------->CCA1(2)        --------->ARR14(2)        <---------ARR14(2)    <---------LBD16  <---------ZAT14  <---------SPL7                              ------>ZmHOX2a(2) ===HOX2a_HOX2a                              *TSS ===HOX2a_HOX2a                              <------ZmHOX2a(2) ===HOX2a_HOX2a                <------ZmHOX2a(1)  <---------ALFIN1 ===HOX2a_HOX2a                =====================HOX2a_HOX2a    ------------>CBF         <------ZmHOX2a(2) ---------------AtSPL3         ======================HOX2a_HOX2a  <-----------GT1          --------->ARR14(2) -----------------SPL14--------->ZAT6       <---------ARR11(3) --------->MYB52(2)          <---------ARR14(2) --------ANAC46  --------->ANAC58           --------->ARR11(3) <---------MYB46(3)       --------->MYB46(3) ===HOX2a_HOX2a  --------->ANAC58           <---------AGP1<---------TOE1(2)             --------->DEAR3(2) -->ZmHOX2a(1)   --------->ANAC46          <---------CCA1(2) <---------MYB52(1)<---------ATHB12   ttcgtgtacggatatgtgctcgcaaacactataggaggctcaattagatctcgcacttccaacgtttgttacaataccgaaatcatccgaaccgatccct  18719700                                                                                   ------>ZmHOX2a(2)                                                                                  ===================                                                                                  <------ZmHOX2a(2)                                                                                 --------->ARR14(2)                                                                                 --------->ARR11(3)                                                                                 <---------ARR14(2)        <---------ZAT14                                                          <---------ARR11(3)        <---------SPL7                   --------->LBD16     <----------DOF2    *TSS      --------------->AtSPL3     ------>ZmHOX2a(1)        --------->GLK1(2)  ---------->DOF2     ------->TEIL               --------->TOE2(3)  --------->YAB1   <-----------GT1==================    <-----------GT1    <-----------GT1 <---------LBD16 ------------>CBF<----------DOF2   aaaaatgaaccgtactggttttaaaaaaccgcttcctcaaacccggtttatatgcataacaatctttttttttctttctcaaagatccctctcgcctctc  18719800                                             <---------At4g35610                                             <-------GAMYB                                            <-----------RAV1(1)                                         --------->GLK1(2)                                        <---------ARR14(2)                                        --------->ARR14(2)                                        <---------GLK1(2)                                  <----------DOF2                                  --------->ARR14(2)    ==================================HOX2a_HOX2a                            --------->ARR14(2)    =================================HOX2a_HOX2a                             <---------ARR14(2)    ------>ZmHOX2a(1)          ------>ZmHOX2a(2)                         <---------At4g35610 ==========HOX2a_HOX2a        <------ZmHOX2a(2)                          --------->At4g35610        - ==========HOX2a_HOX2a        --------->GLK1(1)                  --------->TOE2(3) <---------ARR14(2)   ggtgtccttgtatacagtacttcagttttccgatctctttcagattctgttgccaaacttcatataaacttagtgagcggaactggatttgggtaattct  18719900              <-----------RAV1(1)            <----------DOF2         <---------ARR11(3)   --------->MYB52(1)   ------>MYB46(1)   ------>MYB83   <------MYB46(1)  --------->MYB55(1)                                                                ------>ZmHOX2a(2) --------->AtMYB61<---------MYB46(3)                                               <------ZmHOX2a(2) <---------MYB111(2)                                                              <---------ARR14(2) <---------MYB55(2)                                                               <---------GLK1(2) <---------MYB46(2)     <---------DAG2                                        <---------LBD16 --------->MYB46(3)<-------GAMYB                                           <----------DOF2 <---------MYB111(1)    <----------DOF2                               <---------ANAC58      <-------- <---------MYB59  --------->MYB52(2)                     <<<<<<<ZML2  <---------ANAC58------>ZmHOX2a(1) -------->ANAC46  <------MYB83               <---------YAB1     ---------->DOF2   --------->ARR14(2)   ctaccaaacgagttctttgttggttacttttccactgttttggcagtaagattagactagaacacagaaagggcgttcttttcggatcctcttagaggtt  18720000                                                                           <---------MYB52(1)                                                                          --------->LBD16                               --------->LBD16       <---------ZAT6       --------->At5g28300                              <-----------RAV1(2)  <---------ANAC46      --------->TOE2(3)                              --------->HSFB2a(2)--------->ZAT14         ----------->GT1                      <---------YAB1             <---------ZAT14       <---------At5g28300  <---------ZAT14  <---------AHL20(2)       <---------At4g35610   <---------TOE1(3)  --------->ZAT14------->TEIL <---------HSFB2a(2)--------->REM1(2)<---------TOE2(3) -TOE2(3)  <-------TEIL--------->YAB1       --------->At4g35610   --------->MYB59   tcagtgttctaaattcatgaatttatgatgctccagaagacaattcatctgtgtagtgtttttagttttaggttaccgtaaattcagaaattttcatgct  18720100  Previous    Next  AGI:  At1g50500.1    Description:  HIT1 (HEAT-INTOLERANT 1); transporter. similar to membrane trafficking VPS53 family protein [Arabidopsis thaliana] (TAIR:AT1G50970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23164.1); similar to hypothetical protein OsI_004731 [Oryza sativa (indica cultivar-group)] (GB:EAY76884.1); similar to hypothetical protein OsJ_004369 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14544.1); contains InterPro domain Vps53-like, N-terminal (InterPro:IPR007234) Range:  from: 18711655    to: 18719645    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50510.1    Description:  indigoidine synthase A family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO67294.1); contains InterPro domain Indigoidine synthase A like protein (InterPro:IPR007342) Range:  from: 18719780    to: 18722996    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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