Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <----------DOF2                                             <---                                    <---------DAG2      <---------AHL20(2)             <---------MYB59                                    --------->TOE2(3) --------->CCA1(2) <---------ANAC55(2)      ----                                    --------------->AGL15               --------->ANAC55(2) ---------                                   ----------------->AGL1               --------->ANAC58 ------>MYB83                             --------->DAG2          --------->ARR11(3) --------->ANAC55(1) --------- -------->DOF2<---------WOX13(1) <-----------GT1     <---------ARR11(3) --------->ANAC58 ------>MYB46(1) ----ID1   <---------YAB1   ---------->DOF2  ---------->DOF2 <----------DOF2           --------->AtMYB61   caaaagcttgattttgatttactcagaaccaaaagtaaccttttttgtaaagaaagatttaaactttgagagactcgtaacgagaagaaccaaacccacg  18683400        <---------ANAC58        <---------ANAC46        <---------ANAC58      --------->ARR11(3) --------->GLK1(2)          ---------->DOF2   <---------GLK1(2)     <---------ARR14(2)      <-------GAMYB ------ARR14(2)          --------->ARR14(2)     ----------->GT1                   <---------------AtSPL8 ----->ARR14(2)         <---------GLK1(2)   --------->DAG2           <---------TOE2(3) >TOE1(2)         <-------TEIL             --------->DAG2       <---------ARR14(2)<---------------AtSPL3 >TOE2(2)   ---------->DOF2               ---------->DOF2      <------ZmHOX2a(1) ---------->DOF2   attcggaatttcttgaaagatgcagagaatctgcagtttaacaaaaaagggggttaaagaacagaggaactagggtttgcagagaaagtactgaatttta  18683500                                                                             ------>ZmHOX2a(1)                                                                            <---------MYB59                                                                            --------------->AGL15                                                                           ----------------->AG                                                                           <-----------------AG                                                                  --------->AHL20(2)                 <-----------GT1                           <---------At4g35610            ----------->GT1                                --------->At4g35610                -------        ------->TEIL             --------->CCA1(2)         <---------ZAT2  <-----------------AGL1  <x  --------->TOE2(3)             --------->ARR11(3) --------->MYB52(1)      ----------------->AGL1 <--   aaaacctttgaatctagttaaactatttgaaatagatatagacgaagaaacacaaacagagagctgaattaaaactttcctaatttgataaactaagaaa  18683600                        <---------YAB1                     <---------ATHB12               ---------->DOF2 --->DOF2 --------->AHL20(2)           --------->ANAC46 xxxxxxxxxxxxxxxsmallRNA(i)          --------->MYB46(3)                                       <------ --------ID1--------->YAB1---------->DOF2    --------->YAB1        <---------AtLEC2      ---------->DOF2   gaaacaaaacaaaataatagcaaatgatcaaagaagataacaaacaacaataaccaaagaaaaaaacttacatggatttagagaaaatgtctaaagcttt  18683700                                                      <-------GAMYB                                                     <---------MYB46(3)                                                   <---------MYB52(1)                                                 <-----------RAV1(1)                                           ===================MYC_MYB                                           --------->ANAC58                                           --------->bZIP60(2)                                           <---------TGA1a                           *TSS                                           --------->TGA1a                   --------->ALFIN1                           ==========================bZIP_DOF            <---------ANAC46                           <----------DOF2 --------->ANAC46              <---------ANAC58  <---------ANAC58                          --------->YAB1   --------->ANAC58              <---------ANAC58  <---------ANAC46                          <---------ICU4   --------->O2                  <---------ANAC55(1) ----DOF2                <---------ATHB12  <---------O2  --------->ARR11(3)--------->ALFIN1<---------ANAC58   ttttttgggagtgagagggttctctcaatctttatctctctatccacgtctctggtggttatcttgtgagtaatagcgtgtgtgtgaaatgttgtttgtg  18683800                                                                         <---------ANAC55(2)                                                                         <---------ANAC46                                                                         <---------ANAC58                                                                         --------->ANAC55(2)                                                              ------->TEIL                         <-                                                              --------->MYB52(1)     <---------MYB52(1)                         --------->ZAT6                    --------->ANAC55(2)     <---------DEAR3(2)                 ---------->DOF2                       <----------DOF2   <---------ANAC58 ---------->ID1               <---------TOE2(3)                <----------DOF2    ------------>CBF<------MYB46(1) <-           <----------DOF2              <------------CBF   --------->ANAC46        <------MYB83   <--   ttttgggaaaaaactttaagaaagaaaacactaaaacagaggcattgttccttttggctctacgtaccagacaatgcgtgatagtcggttttgtcttctt  18683900                                                  <---------YAB1                                                --------->ATHB51                     <----------DOF2            <--------HAHB4            <---------ANAC58                   --------->ICU4            <---------ANAC58              <---------TOE1(3)           ---------->ID1       <---------ANAC58<---------ICU4          <-----------GT1   <----------DOF2 <------ZmHOX2a(1)     ---------->ID1------>ZmHOX2a(1)      <---------TOE2(3)   <------------------------ANAC81    <----------DOF2      --------->DAG2 ---------DOF2 --------->ARR14(2) <---------TOE1(2)      ---------->DOF2 <-----------GT1 --------DAG2  <---------ARR14(2) <---------TOE2(2)--------->AHL20(2)   <-----------GT1 ----------------------ANAC81   <---------ANAC58-------->ATHB1 ----------->GT1                     <-   cctttttgtttttttcgtttcctctttcttctttccttggttttaaggaattattaaacaaaaggttgtcaaattttccaatcccatccatctatcttat  18684000                                                              <---------ZAT18                                                              --------->ZAT18                                                              --------->ZAT14                                                              <---------ZAT14          <---------AHL20(2)                                                           <---------ANAC58            --------->AHL20(2)       --------->ZAT18                      <---------ANAC55(1)                  --------->TOE2(3)       <---------ZAT18                      --------->ANAC55(2)            <---------REM1(1)       <---------ZAT14                      --------->ANAC55(1)          ----------->GT1       --------->ZAT14         <---------YAB1  ------->TEIL<---------ANAC58----------->GT1     --------------->AtSPL8   --------->ARR11(3)         <---------YAB1 --------->ALFIN1    <---------ANAC46          <---------ARR11(3)   <---------YAB1    --------->DAG2   --------->AHL20(2) --------------AGL15        ------->TEIL    <---------ANAC55(2)     ---------->DOF2 --------->YAB1   actattatgtgtactagtactacatgaatgaatatcatataagaatacgtattttgattttgagtgctcttaaagtggtgtaacattaataaataaaact  18684100                             <---------YAB1                   --------->TOE2(3)                           --------->YAB1                <---------ATHB12               <-----------RAV1(1)                  <-----------RAV1(1)                  --------->WOX13(1) <---------ANAC46              <---------ANAC58                        <-------TEIL   <---------------AGL15        <--              <---------ANAC58              --------->YAB1 --------->WOX13(1)          <---------TOE2(3)   gaatgagagtgtattagcttatgttgcatttataaataaaactgaataagaatacatccatcaatcttatactattatgtgtattagctaatgttgcatt  18684200                                                            <---------YAB1                                                   <---------YAB1<---------AHL20(2)                                                  --------->AHL20(2)          <---------AHL20(2)                 <---------YAB1 --------->ICU4         --------->AHL20(2)           <---------YAB1     --------->ICU4---------->DOF2      <----------DOF2               <---------ZAT6<---------AHL20(2)  <---------AHL20(2) -------YAB1                 <------ZmHOX2a(1)  <---------YAB1<---------AHL20(2) --------->CCA1(2)  <   ttcattttcttttaaatttgtaagacttgtaggaattagtcttattgattatttttatagttattattttatataaagtcaagataagagaagtttcacc  18684300  Previous    Next  AGI:  At1g50420.1    Description:  SCL3 (SCARECROW-LIKE 3); transcription factor. similar to SCL21 (SCARECROW-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT2G04890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60488.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 18681594    to: 18683785    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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