Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ANAC58                                                                               <---------O2--------->ANAC58                                                                               ----------->GT1                                                                               <---------bZIP60(1)                                                                               --------->O2--------->ANAC46                                                                               --------->TGA2(1)                                                                               <---------TGA2(1)                                                                               --------->bZIP60(1)                                                                 ---------->DOF2         ---------->DOF2                                                           <---------ANAC46    <---------ANAC46                 --------->ANAC58                        --------->ZAT18      <-----------STF1                 --------->ANAC46     --------->ANAC58   <---------ZAT18      ----------->STF1      <                 --------->ANAC58     --------->ANAC58  ----------->HVH21    <---------TGA2(2)     --       ---------->ID1             ----------->GT1 --------->GLK1(2)         <---------ATHB12    -----   <---------MYB52(1)    ----------->GT1          --------->ARR11(3)        ----------->HVH21 ------- ---->AtSPL8   ---------->DOF2--------->AHL20(2)  <---------ARR11(3)        ----------->TGA1  =======   agttcgtttgtctctctaaaagcaatgtagaaaaaaatgtaagaaactcgaaaatctagtgacctataaaagattgcaatgacgtcaaaacaaaagcaac  18635200                                                                       <---------At4g35610                                                                      --------->MYB52(2)                                                                      <---------DEAR3(2)                                    <---------ATHB12                <---------MYB52(1)                                  --------->MYB52(1)               <-----------TGA1                                ------->GAMYB                --------->ARR14(2)                              --------->ANAC58               <---------ARR14(2)                              --------->ANAC58               <---------GLK1(2)     ----------->RAV1(2)      -------->P                   <---------ARR11(3)         --------->CCA1(2) ---------ICU4            --------->ANAC58              ----------->RAV1(1)        ----------->ARR10 ------->ICU4             --------->ANAC46            --------->MYB46(3)     --------->MYB52(1) ---->ICU4                --------->ANAC58           --------->At4g35610    ------>ZmHOX2a(1) ---->RAV1(1)         --------->TOE1(3)              <---------At4g35610    ========================= ================RAV  --------->TOE2(3) ----------------->AGL2     <-----------HVH21 <---------ARR14(2)   aattagtacctggccaataccataccttaagcaacccaatggtcccaaaatagtcagccaacatattctcgtcagttcctaaggggagatttgaaacgta  18635300                                                               --------->ARR14(2)                 --------->ARR14(2)                      <------NtERF2                 <---------ARR14(2)                     ------>NtERF2                <---------GLK1(1)                       <---------RAP2.6(3)                --------->GLK1(1)                      --------->RAP2.6(2)               <---------ARR11(3)                      --------->DEAR3(1)               <---------ARR14(2)                      --------->RAP2.3(3)               --------->ARR11(3)                      --------->RAP2.3(2)               --------->ARR14(2)                      --------->ANAC46              <------ZmHOX2a(1)                       --------->ERF1       <---------MYB52(1)                             --------->RAP2.3(1)     ====================================================MADS_MADS     --------------->AGL15                        ---------->DOF2        --------->YAB1    =================HOX2a_HOX2a              ---------->DOF2  <---------ARR14(2)    ------>ZmHOX2a(2)      --------->YAB1<---------------AGL15 --------->GLK1(2) ==========HOX2a_HOX2a --------->MYB46(3)--------------->AGL15<---------GLK1(2)                   ---   gactgatccattagtaggatatccagccatcgtaatccaatttcatcaaaaagaaagccgccaagaatctgtaaatgacaataccaaaacttcacttagc  18635400                                                                                                  ---                                                                                        <---------GLK1(1)                                                                                    <-------TEIL  ---                                                                                   --------->CCA1(2)                                                                                  <---------ARR14(2)                                                                                  --------->ARR11(1)                                                                                  --------->ARR14(2)                                                                                 <---------HSFB2a(1)                                                                                 --------->HSFC1(2)                                                                                 <---------HSFC1(2)                                                                                 --------->HSFB2a(1)                                                      <---------At4g35610       ----------->ARR10----                                                      --------->At4g35610  ---------->DOF2     ------ -------->RAV1(1)                           ---------->DOF2          <----------ID1--------->ARR14(1)   caacattgaaacctcgctaagaaataacatcgagacattgaaaccccaaagttttgagctcaaaaaccatgagaacaaaaagaagattcgaaatctgacc  18635500                                                                    <------ZmHOX2a(1)                                                              <------NtERF2       ----------->GT1                                      <---------DEAR3(1)    --------->CCA1(2)                                      --------->At4g35610 --->MYB83                                            <---------ARR14(2)     <------NtERF2 --->MYB46(1)                                         --------->ARR14(2)   <---------DEAR3(1)    ---- ----->MYB52(1)                        ----------->HVH21   <---------At4g35610       <---------TOE2(3) --->MYB46(3)                      <---------GLK1(1) <------ZmHOX2a(1) <---------AtMYB61    <--------   aacgagatagggaaacatagaagagcgagatagatagaaatctgaccagcgatgaggattcagcggcgaaggagaggtcgtcggactagggtttctttct  18635600                                           --------->ARR11(3)                                       ---------->DOF2                                  <---------ANAC46                                    <-------GAMYB                              ------>ZmHOX2a(2)                                      ----------->GT1                             <------ZmHOX2a(2)                                       <---------MYB46(3)                            <---------ARR11(3)                                    <------MYB46(1)                            --------->AGP1 <---------GLK1(2)                      <---------ANAC46                            --------->ARR14(3)                                    <------MYB83 ------   <---------ANAC46         <---------ARR14(3)                                   --------->MYB55(2)   <---------ANAC58         --------->ARR11(3)                                   <---------AtMYB61   <---------ANAC58         <---------ARR14(2)              --------->TOE2(3)    --------->MYB111(1)  <-------TEIL              --------->ARR14(2)           --------->ARR14(2)      --------->MYB46(2) --------->ALFIN1          <---------GLK1(1)             <---------ARR14(2)      --------->MYB111(2) ------>DOF2               --------->GLK1(1)        <---------TOE1(3)            <---------MYB46(3) - --DOF2       *TSS        ----------->ARR10<---------ARR11(3)          <------------CBF   <---------YAB1   aaagtgcgtcgagtgagagagagagagagagatcttgcgaataaagattttcttaagggtaacctcgatagtcgattgtttgtttggtggttatatttgc  18635700                                                                                                  <--                                                                                              -------                                                                         <---------ANAC46     <------                                                                <-----------------AGL3       <-------                                                             <---------GLK1(1)               --------                                                             --------->GLK1(1)              <--------                                                         <---------TOE2(3)                --------->ATHB51                                                         <---------TOE1(3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    <---------MYB46(3)   <---------ANAC58 <---------ICU4                                                 <---------ANAC46        <---------ANAC58 <--------HAHB4                                                 <---------ANAC58<----------DOF2          -------->ATHB1          <----------DOF2                   <---------AHL20(2)  <-----------------AGL2   --------->ICU4       <-----------GT1            ---------->ID1 <---------ANAC58--------------->AGL15<------ZmHOX2a(1) ------>CBF             --------->YAB1  <---------AHL20(2) <------ZmHOX2a(1)        <---------TOE2(3) -------->AHL20(2)      ----------->GT1<---------AHL20(2)--------->ANAC55(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   aatttcatataactttcccccttaaattgtaattttgtttttttatttttttcgtggttaaggaattctttttttgggtgcaaattgaggaattattaat  18635800                             --------->LBD16                            <---------ANAC46                            <---------ANAC58                            <---------ANAC58                           <---------LBD16                          --------->ALFIN1                        <---------ANAC58                        <---------ANAC58                        <---------ANAC46                   <---------ALFIN1 <---------ANAC55(2)                  --------->LBD16   <---------ANAC55(1)                 --------->ANAC58   --------->ANAC55(2)                 --------->ANAC46   <---------ANAC46          xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------GT1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         --------->DAG2         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         ---------->DOF2 ---------GT1    --------->ANAC58   <---------ANAC58                             --------->DAG2 -->AHL20(2)    <---------LBD16xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             ---------->DOF2 ---AHL20(2)  <---------ARR14(2)    <---------ANAC58                           <---------AHL20(2) --AHL20(2)   --------->ARR14(2)   <---------TOE2(3)<---------ICU4            xxxxxxxxxxxxxxxxxxxxxxx ->AHL20(2)   xxxxxxxxxxxxxxxx>smallRNA(i) <---------YAB1                  --------->AHL20(2)   <xxxx -YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <-----------GT1 <---------AHL20(2)----------->GT1  <-   ttacaaattagatgagtacccgcactacgtgcgggtttacgtattactatttactaattgttttatataatgtctgtttatataaagtaaagttgaatgc  18635900                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <---------ANAC58                                                                             <---------ANAC58                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                            --------->At4g35610                                                            <---------At4g35610              <-------           --------->TOE2(3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          --------->YAB1                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------YAB1 xxxxxxxxxxxxx>smallRNA(fl3)          ---------->DOF2    <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------AHL20(2) >smallRNA(i2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ------->TEIL  xxxxxxxxxxxxxxx --------TOE2(2)         <---------YAB1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxx   ataggttttgaaacataaatatgttttgtaattgtttttgaaaagtccaactatattagttcatctgaaaaacgaatgtgcttgagttgttttttattgt  18636000      --------->GLK1(2)                 <----------DOF2                                  <---------AHL20(2)     <---------GLK1(2)                  <---------DAG2                                   --------->AHL20(2) xsmallRNA(si3)                        <---------ANAC58                --------->At5g28300        --- --YAB1                                <---------ANAC58               ----------->GT1    <---------ICU4 xxxxxxxx>smallRNA(i2)     <---------AHL20(2)               <---------GLK1(2)            --------->ATHB51 xxxxxxxsmallRNA(si3)      --------->AHL20(2)        <xxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------AHL20(2)   tgttttagattcttagtttttttttgaatttatatatccttgcttttttagttatatgtatagattgtgagacagtgaaattttagaaaaattatttctt  18636100  Previous    Next  AGI:  At1g50300.1    Description:  TAF15 (TBP-ASSOCIATED FACTOR 15); RNA binding. similar to TAF15b (TBP-ASSOCIATED FACTOR 15b), binding [Arabidopsis thaliana] (TAIR:AT5G58470.1); similar to TAF15b (TBP-ASSOCIATED FACTOR 15b), binding [Arabidopsis thaliana] (TAIR:AT5G58470.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15403.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 18632223    to: 18635614    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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