Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                        <---------GLK1(1)                                                           <                     --------->ANAC46                            ----------->GT1                   <- ->ZAT2    --------->MYB52(1)  --------->ARR14(2)               <---------TOE2(3)               <---- --At4g35610         --------->ANAC58                   --------->YAB1                    ---------->DOF2 ->At4g35610         --------->ANAC58                <----------DOF2           <---------ATHB12------   cataaacatgtagaaacggctacaggcaatcccaatatgctggaaacaaaacttcctttcatacttgaggtaattctgcaaatcaaactttctaaagata  18631700                                                                      ---------->DOF2                                                                 --------->ATHB51                                                                 -------->ATHB1                                                                 --------->ATHB12    --------->LBD16                   --------->AHL20(2)        <---------ATHB51 -------->ARR14(2)                   --------->AHL20(2)         --------->ICU4 ---------ARR14(2)       --------->YAB1                         <---------YAB1                 ------ --------GLK1(1)         <---------ICU4              --------->ARR11(3)                        ------ ---TEIL --------->TOE2(3)     <---------MYB59       <---------ARR11(3)                      -------- --->CCA1(2)            --------->ICU4<---------AHL20(2)        <---------AHL20(2)  ---------->DOF2   caaatccgaaaacttaatcttaggctattatgacctaaaattaatctccaattgaaatctttagaaattattgaaagaaaaactgaaaaagaaactaaag  18631800                                             <------NtERF2                                            ------>NtERF2                           <------NtERF2    --------->LBD16                         <---------ANAC46   --------->ORA47(1)             --------->HSFB2a(2)                         <---------DEAR3(1)--------->ATERF1(2)             <---------HSFB2a(2)                        <---------LBD16    <---------RAP2.6(2)            <-----------------AGL1                      <---------DEAR3(1)   --------->RAP2.6(2)            ----------------->AGL1                     --------->SPL7        <---------ATERF1(2)        --------->GLK1(1)                    --------->MYB52(1)     --------->DEAR3(1)         <---------GLK1(1)                   <---------SPL7         --------->RAP2.6(3)        <---------GLK1(2)                 <------ZmHOX2a(2)    ---------->DOF2              --------->LBD16  <---------ARR14(2)                 ========================HOX2a_HOX2a              --------->RAP2.6(2)--------->DEAR3(2)  ----------->GT1====================HOX2a_HOX2a                 <---------LBD16    --------->ARR14(2) --->ANAC58  --------->MYB46(3)   <------ZmHOX2a(1)          ---------->DOF2       <------ZmHOX2a(1) --->ANAC58--------->MYB52(1)    ----------->GT1  <---------ARR14(2) --------->ARR14(2)       <------ -->DOF2  --------->MYB46(3)  <------ZmHOX2a(1)   --------->ARR14(2) <---------ARR14(2)      <-------   caatcggtaagaacaaccgatcgaacggcggaggaaggataaaagccggccaaaaccgcttgtaaaagccggatttgccagaagaggaccggccatcttt  18631900                                                                                     ------>NtERF2                                                                                     <---------RAP2.6(3)                                                                         <---------HSFB2a(2)        <                                                                      <---------YAB1<---------ANAC58-                                                                    --------->KAN4(1)<-----------HVH21                              <----------DOF2                       <---------KAN4(1)<---------SPL7<-                           <---------ARR11(1)                      <---------KAN4(2)--------->ATERF1(2)                           --------->ARR11(3)               <---------SPL7          --------->RAP2.6(2)                           <---------ARR11(3)              <---------ETT(2)         <---------ANAC58-              <---------AHL20(2)                           --------->ETT(2)         <---------ATERF1(2)              --------->AHL20(2)                    <---------GLK1(1)--------->KAN4(2)    <---------TOE1(2)   ---------->DOF2    ------>ZmHOX2a(1)    <---------ARR14(2)     <---------GLK1(2) --------->DEAR3(1) ----DOF2    --------->AHL20(2)           <------ZmHOX2a(1)--------->WRKY38(1) <---------At4g35610 -- --ICU4   --------->ICU4  <---------CCA1(2)--------->ARR14(2)   --------->LBD16--------->At4g35610---   gctaacaaagccaaaattaatctccttcatatcttttagagagaggaactgttgaattctgtcgaccggattattctggtaaactgccgtcccaagtttt  18632000            --------->YAB1                                         ----------------->AGL3           <---------YAB1                                   <-----------GT1 ---------RAP2.6(3)                 <-----------GT1      <---------AHL20(2)     --------->HSFB2a(2) ----->NtERF2                   <---------AHL20(1)       <---------ICU4 --------->YAB1 --------ETT(1)              --------->AHL20(2)    --------->TOE2(3)   <---------YAB1 -------->ORA47(1)    ----------->HVH21            --------->TOE1(3)--------------->AGL15      <----- ------->DEAR3(1)   --------->CCA1(2)    --------->ANAC46--------->AHL20(2)     <---------HSFB2a(2) ------>DEAR3(2)  --------->YAB1--------->AHL20(1)--------->At4g35610------>ZmHOX2a(1)         ------   gccgaccatgtttatgacaatgatatgacattaatatatatccccacaaataagcttaattttttcttatcctattatagtttcagaaactatattgtcc  18632100                                                                 ----------->GT1                                                        <------------CBF   --------->ARR11(3)                                  --------->ATHB12                            <-   --------->GLK1(2)                                   -------->HAHB4                        --------   <---------ARR11(3)             --------->AHL20(2)  <---------YAB1             <----------ID1------  *TSS                 <---------AHL20(2) ---------->DOF2<---------WOX13(1)   --------->MYB52(1) ---- ----ZAT18         <---------AHL20(2)  --------->YAB1 <---------ATHB12       ---------->DOF2 -------- --->ZAT18  ---------->ID1        <---------AHL20(2)  --------->ICU4     <----------ID1     ---------   acaaaaatcttcttgttctattttttttattcccattaaaatcatacagcgatgaaatgattggcgatggaaaaaaaaacaaagggacaactaaaaataa  18632200                                                                            <---------------AGL15                                                                            --------------->AGL15                            --------->ANAC58   --------->ANAC46            <-----------------AGL1                            --------->ANAC58   --------->O2              <-----------GT1    ---------->DOF2         --------->ANAC46   --------->TGA1a        <--------HAHB4 ---------ID1               --------->O2       <---------O2           --------->YAB1 ->AHL20(1)                 <---------O2       <---------bZIP60(2)    --------->ATHB51 --->YAB1          --------->ANAC55(2)         <---------TGA1a        <---------ICU4 ----->ZAT6        <---------ANAC55(2)         <---------bZIP60(1)   --------->ICU4 ->AHL20(2)    --------->YAB1                  --------->bZIP60(1)   <---------YAB1                 < >YAB1       --------->AHL20(2)             ----------->HVH21      --------------->AGL15----------->GT1   tactacaaaagacaaaataatacttaatacacgtctaaattagcaattgacgtcgctaaccatgttttgccataattaccaattttcgaaacgataaaca  18632300                                                                                      <---------ANAC55(2)                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                               --------->ANAC46                                                                            --------->ZAT14   --------->ARR14(2)          ----------->GT1                              <---------ZAT14     -----   <---------ARR14(2)   --------->AtMYB61                 >>>>>>>>>>MYB80 --------->ANAC46     ------ ---------ANAC46   --------->YAB1                 <---------ATHB12      <-----------GT1       -------   tggagtattctcagaacataatcagaccaaaacaagtgaaaaacaatagccattgattcaaaccaaaatgagtttcacttcacacaataagtaaacaaaa  18632400                                                                                         <---------ANAC55(2)                                                                                         --------->ANAC55(2)                    <-------GAMYB                                                        ------------              -------->HAHB4                 --------->At4g35610                         ------------    --------->ARR11(3)    ---------->DOF2--------->MYB52(1)            <---------YAB1   <---------At5g28300 ---->DAG2    --------->YAB1       <----------ID1                --------->ZAT6       <---------MYB52(1) ---->DOF2   <---------YAB1        <---------ETT(2)         --------->TOE1(3)         --------->ARR14(2) --->DOF2    --------->ICU4        --------->ETT(2)         --------->TOE2(3)         <---------ARR14(2)   ggcgaagacattgtaatgataccgttgtaaaagtaagtcgacaaaacagatgagaaactaaaccctaacacttatgagtaatctctcagttacggtacct  18632500          ----------->HVH21         --------->HSFB2a(2)         <---------HSFB2a(2)       <-------TEIL     ------->MYC2                                              <---------ANAC58     <-------MYC2                                              <---------ANAC58     <-------MYC3                                 --------->YAB1     ------->MYC3                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <---  <---------ALFIN1                    --------->YAB1      --------->ANAC58                   <------- --->AtSPL8                          <---------ATHB12     --------->ANAC58                <---------At4g35610 --->AtSPL3 ------>NtERF2            <------ZmHOX2a(2)  <-----------GT1<----------DOF2 <---------At4g35610   gcttccacgttcgcgaccgtagtctctgtctctgtcccgatcatggtcatagtcatagtcacgctccttgcctctttccctctctcggcttctgcttctg  18632600  Previous    Next  AGI:  At1g50290.1    Description:  unknown protein Range:  from: 18631227    to: 18632102    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50300.1    Description:  TAF15 (TBP-ASSOCIATED FACTOR 15); RNA binding. similar to TAF15b (TBP-ASSOCIATED FACTOR 15b), binding [Arabidopsis thaliana] (TAIR:AT5G58470.1); similar to TAF15b (TBP-ASSOCIATED FACTOR 15b), binding [Arabidopsis thaliana] (TAIR:AT5G58470.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15403.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 18632223    to: 18635614    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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